Clone Sequence Records
BO10962.3prime Sequence
896 bp (891 high quality bases) assembled on 2006-04-19
> BO10962.3prime
ATGGTCTAGAAAGCTTGCGAATCCACGGAAGTCCTCATCGGCACTGTCAT
CACTGGCGGGCGTGGATGATCGTTTGCGGCTTTCTGGTTTTTCCTCTGGC
TGATCTGTTGCTTCCTCCTCAGCACTCGGCACAATTTCCTGAGCCTGCGA
TCGGTGGTGGAAGACAAAGGACACGCACTTGCAATCCATCCAGGCCTGGG
CGAGAATATTGTCAGGCAGGCCTCTGTTGTTGGAGCAATGGTACCATTGT
GACAAATGCGAGGTGCAGTCCGTGTCCTCGGGCGGTGGCTTCATTTGTAT
ATTTTGAACGCAGCGCTTACACTTGAGCTTGTCGTGTGTGTCGGACAGAA
TGTTCGCATCAAATGTAAACAAGTCCTTCAGATCGTCGCGGGTGAAATGC
TTCTCGGCCGACTCGTTGTTGTCAATGATGGTGCTCGACAGGGATTTTTT
GTGCGTCTGTCGCTGCAGGATCTTCTCCTCGATGGAACCACTGGCAACGA
GGCGATATATGTAACAGGGCTTCTTTTGCCCGTCACGCCACACTCTGGCC
ATTGCCTGCTCATCGTTGGCCGGATTCCAGTCTGGGTCAAACATGAACAG
GCGGTTGGCTCCAATCAAATTCAAGCCGCAGCCGCCAGCCTTGCTGCTCA
GCATGAAAAGGAAGCTGTCAGACTCCGGGTCATTGAATCGGTCAACAACC
TTCGATCGCTTCTTGATGGACATGGTGCCATCAAGCCGGACAAATCCGTA
CTTTCGCTTCCTCGCGAGCTGCTCGAACAAGTCCAGGGTCTGTGTGTAAT
TGGAAATGAGAACCACCTTGTCGTTGCCCTCTGCACGTATTGCTGCCAGC
ATGAAATCCAGGAGCATGAACTTGCCACTTAGCTCTGGATTGAGAT
BO10962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3736-PA | 2355 | okr-RA | 1475..2352 | 896..19 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2878 | CG3736-RA | 1525..2402 | 896..19 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2990661..2991064 | 493..896 | 2020 | 100 | Plus |
| 2L | 23513712 | 2L | 2990070..2990379 | 19..328 | 1550 | 100 | Plus |
| 2L | 23513712 | 2L | 2990435..2990599 | 328..492 | 825 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 04:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2246..2335 | 137..226 | 135 | 61.1 | Plus |
BO10962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:26 Download gff for
BO10962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-PA | 1475..2355 | 18..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:28 Download gff for
BO10962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3736-PA | 1475..2355 | 18..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:09 Download gff for
BO10962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 1525..2408 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:12 Download gff for
BO10962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 1525..2408 | 15..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:12 Download gff for
BO10962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2990064..2990379 | 15..328 | 99 | <- | Plus |
| 2L | 2990436..2990599 | 329..492 | 100 | <- | Plus |
| 2L | 2990661..2991064 | 493..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:09 Download gff for
BO10962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2990064..2990379 | 15..328 | 99 | <- | Plus |
| arm_2L | 2990436..2990599 | 329..492 | 100 | <- | Plus |
| arm_2L | 2990661..2991064 | 493..896 | 100 | | Plus |
BO10962.5prime Sequence
883 bp (865 high quality bases) assembled on 2006-04-19
> BO10962.5prime
GAAGTTATCAGTCGACATGCGGCGCAGTCTGGCTCCCAGCCAACGTGGAC
CACTGCGTCCCGAGTCCCGTCACTCCTTCACGCCGCCACTGCTGAAGAAA
AACAAGCGATCCTGCCAGCAGGAACTGGAGCGAGAGCAAGAACTGGACAG
AAGACGACTGGGCGCCCTCCGAGATGCCAGCAACACATCAGAGCTCCCAC
TGCCTATTCGCTTCACGGCGAACAGCGAGTATGAGTTGGCCATTGCCAAG
GTTCTGGCACGGAAGTTCAAGGTGCCCATGGACAATTACGTACCGGATTA
CGGTGGTAAACGGGTCCTGGGCGTGCGGCGCTGCATTTCCCGACGACCCC
TACACGATCCGATGGCCTGCAACGCCTTGGTACTCTTCCATCCACCCGCC
TACACAGAACACGAGCGCATGGGCATGGATCCGACCAAGGTTCTGGTGCA
CGTCGTCGTCGATCCGCTGCTGAGCAACATATTGCGGCCGCACCAGCGCG
AGGGAGTGCGTTTCATGTACGAGTGTGTGGAGGGAAAGCGGGGCAACTTC
AATGGATGCATCATGGCCGACGAAATGGGTCTCGGGAAGACGCTGCAGTG
CGTAACGCTGGTCTGGACACTTCTAAGGCAGGGGCCCGAGTGCAAGCCGA
CGATCAACAAAGCCATTGTCGTGTCTCCATCATCGCTGGTTAAGAACTGG
GAGAAGGAGTTTACCAAGTGGCTTCACGGTCGACTCCTTTGCCTGCCCAT
GGAGGGCGGGACCAAGGAGAACACCATCCGAGCACTCGAGCAGTTCTCCA
TGACTTCTGCCCGGCTGGGGACACCTGTTCTGCTCATCAGCTACGAGACA
TTTCGCATCTACGCGGAGATCCTGTGCAAGTAC
BO10962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3736-PA | 2355 | okr-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2878 | CG3736-RA | 51..917 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2991786..2992650 | 883..19 | 4325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:49:46 has no hits.
BO10962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:27 Download gff for
BO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:29 Download gff for
BO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3736-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:41 Download gff for
BO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 42..917 | 5..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:54 Download gff for
BO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 42..917 | 5..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:54 Download gff for
BO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2991786..2992650 | 19..883 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:41 Download gff for
BO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2991786..2992650 | 19..883 | 100 | | Minus |
BO10962.complete Sequence
2386 bp (2386 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631939
> BO10962.complete
GAAGTTATCAGTCGACATGCGGCGCAGTCTGGCTCCCAGCCAACGTGGAC
CACTGCGTCCCGAGTCCCGTCACTCCTTCACGCCGCCACTGCTGAAGAAA
AACAAGCGATCCTGCCAGCAGGAACTGGAGCGAGAGCAAGAACTGGACAG
AAGACGACTGGGCGCCCTCCGAGATGCCAGCAACACATCAGAGCTCCCAC
TGCCTATTCGCTTCACGGCGAACAGCGAGTATGAGTTGGCCATTGCCAAG
GTTCTGGCACGGAAGTTCAAGGTGCCCATGGACAATTACGTACCGGATTA
CGGTGGTAAACGGGTCCTGGGCGTGCGGCGCTGCATTTCCCGACGACCCC
TACACGATCCGATGGCCTGCAACGCCTTGGTACTCTTCCATCCACCCGCC
TACACAGAACACGAGCGCATGGGCATGGATCCGACCAAGGTTCTGGTGCA
CGTCGTCGTCGATCCGCTGCTGAGCAACATATTGCGGCCGCACCAGCGCG
AGGGAGTGCGTTTCATGTACGAGTGTGTGGAGGGAAAGCGGGGCAACTTC
AATGGATGCATCATGGCCGACGAAATGGGTCTCGGGAAGACGCTGCAGTG
CGTAACGCTGGTCTGGACACTTCTAAGGCAGGGGCCCGAGTGCAAGCCGA
CGATCAACAAAGCCATTGTCGTGTCTCCATCATCGCTGGTTAAGAACTGG
GAGAAGGAGTTTACCAAGTGGCTTCACGGTCGACTCCTTTGCCTGCCCAT
GGAGGGCGGGACCAAGGAGAACACCATCCGAGCACTCGAGCAGTTCTCCA
TGACTTCTGCCCGGCTGGGGACACCTGTTCTGCTCATCAGCTACGAGACA
TTTCGCATCTACGCGGAGATCCTGTGCAAGTACGAGGTGGGAATGGTGAT
ATGCGACGAGGGACATCGCCTCAAGAACAGCGACAATCTGACGTATCAGG
CTCTCATGGGACTGAAGACAAAGCGACGGGTCTTGCTTTCCGGCACTCCC
ATCCAGAACGATCTTACTGAGTACTACAGCCTGGTGAACTTTGTAAACCC
GGAGATGCTGGGAACGGCGGCCGTGTTTAAGCGCAACTTCGAGAGCGCTA
TTCTGCGGGGCCAGAATACTGACTCCACGGAACAGGAGCGACAACGGGCC
ATAGAGAAGACACAGGAGCTGATAGGTCTGGTCGATCAGTGCATCATTCG
TCGCACTAATCAAATTCTAACCAAATATCTGCCGGTTAAGTTTGAAATGG
TTATCTGTGCGAAACTGACGGCGATTCAACTCGAGCTATACACGAATTTC
TTGAAGTCTGATCAAGTTCGACGTAGTTTGGCGGATTGCAATGAAAAGGC
TTCGCTTACGGCGCTGGCAGACATTACAACGCTTAAGAAGATTTGCAGTC
ATCCGGATCTCATATATGAGAAGCTCACTGCGCGGGAAAAGGGATTCGAA
AACTCCCAAAATGTGCTGCCTAGTAATTACAAACCAAAGGATCTCAATCC
AGAGCTAAGTGGCAAGTTCATGCTCCTGGATTTCATGCTGGCAGCAATAC
GTGCAGAGGGCAACGACAAGGTGGTTCTCATTTCCAATTACACACAGACC
CTGGACTTGTTCGAGCAGCTCGCGAGGAAGCGAAAGTACGGATTTGTCCG
GCTTGATGGCACCATGTCCATCAAGAAGCGATCGAAGGTTGTTGACCGAT
TCAATGACCCGGAGTCTGACAGCTTCCTTTTCATGCTGAGCAGCAAGGCT
GGCGGCTGCGGCTTGAATTTGATTGGAGCCAACCGCCTGTTCATGTTTGA
CCCAGACTGGAATCCGGCCAACGATGAGCAGGCAATGGCCAGAGTGTGGC
GTGACGGGCAAAAGAAGCCCTGTTACATATATCGCCTCGTTGCCAGTGGT
TCCATCGAGGAGAAGATCCTGCAGCGACAGACGCACAAAAAATCCCTGTC
GAGCACCATCATTGACAACAACGAGTCGGCCGAGAAGCATTTCACCCGCG
ACGATCTGAAGGACTTGTTTACATTTGATGCGAACATTCTGTCCGACACA
CACGACAAGCTCAAGTGTAAGCGCTGCGTTCAAAATATACAAATGAAGCC
ACCGCCCGAGGACACGGACTGCACCTCGCATTTGTCACAATGGTACCATT
GCTCCAACAACAGAGGCCTGCCTGACAATATTCTCGCCCAGGCCTGGATG
GATTGCAAGTGCGTGTCCTTTGTCTTCCACCACCGATCGCAGGCTCAGGA
AATTGTGCCGAGTGCTGAGGAGGAAGCAACAGATCAGCCAGAGGAAAAAC
CAGAAAGCCGCAAACGATCATCCACGCCCGCCAGTGATGACAGTGCCGAT
GAGGACTTCCGTGGATTCGCAAGCTTTCTAGACCAT
BO10962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2355 | CG3736-PA | 1..2352 | 17..2368 | 11760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2878 | CG3736-RA | 51..2402 | 17..2368 | 11760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2991335..2992650 | 1334..19 | 6580 | 100 | Minus |
| 2L | 23513712 | 2L | 2990661..2991066 | 1894..1489 | 2030 | 100 | Minus |
| 2L | 23513712 | 2L | 2990070..2990379 | 2368..2059 | 1550 | 100 | Minus |
| 2L | 23513712 | 2L | 2990435..2990599 | 2059..1895 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 2991124..2991279 | 1489..1334 | 780 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2246..2335 | 2250..2161 | 135 | 61.1 | Minus |
BO10962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:01 Download gff for
BO10962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 1..2355 | 17..2369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:01 Download gff for
BO10962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 44..2410 | 5..2372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:07 Download gff for
BO10962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 51..2402 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:02 Download gff for
BO10962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 44..2410 | 5..2372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:08 Download gff for
BO10962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 51..2402 | 17..2370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:08 Download gff for
BO10962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2991335..2992651 | 17..1334 | 99 | | Minus |
| 2L | 2990066..2990379 | 2059..2370 | 99 | <- | Minus |
| 2L | 2990436..2990599 | 1895..2058 | 100 | <- | Minus |
| 2L | 2990661..2991066 | 1489..1894 | 100 | <- | Minus |
| 2L | 2991125..2991278 | 1335..1488 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:07 Download gff for
BO10962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2990066..2990379 | 2059..2370 | 99 | <- | Minus |
| arm_2L | 2990436..2990599 | 1895..2058 | 100 | <- | Minus |
| arm_2L | 2990661..2991066 | 1489..1894 | 100 | <- | Minus |
| arm_2L | 2991125..2991278 | 1335..1488 | 100 | <- | Minus |
| arm_2L | 2991335..2992651 | 17..1334 | 99 | | Minus |
BO10962.pep Sequence
Translation from 16 to 2386
> BO10962.pep
MRRSLAPSQRGPLRPESRHSFTPPLLKKNKRSCQQELEREQELDRRRLGA
LRDASNTSELPLPIRFTANSEYELAIAKVLARKFKVPMDNYVPDYGGKRV
LGVRRCISRRPLHDPMACNALVLFHPPAYTEHERMGMDPTKVLVHVVVDP
LLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVW
TLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTK
ENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGH
RLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGT
AAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQI
LTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTAL
ADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPKDLNPELSGK
FMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTM
SIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP
ANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID
NNESAEKHFTRDDLKDLFTFDANILSDTHDKLKCKRCVQNIQMKPPPEDT
DCTSHLSQWYHCSNNRGLPDNILAQAWMDCKCVSFVFHHRSQAQEIVPSA
EEEATDQPEEKPESRKRSSTPASDDSADEDFRGFASFLDH
BO10962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-PA | 784 | CG3736-PA | 1..784 | 1..784 | 4108 | 100 | Plus |
| Chd3-PA | 892 | CG9594-PA | 267..757 | 156..670 | 601 | 30.2 | Plus |
| Mi-2-PD | 1973 | CG8103-PD | 721..1225 | 156..681 | 590 | 29.3 | Plus |
| Mi-2-PC | 1982 | CG8103-PC | 730..1234 | 156..681 | 590 | 29.3 | Plus |
| Mi-2-PA | 1982 | CG8103-PA | 730..1234 | 156..681 | 590 | 29.3 | Plus |
