Clone Sequence Records
BO10966.3prime Sequence
820 bp (756 high quality bases) assembled on 2006-04-19
> BO10966.3prime
ATGGTCTAGAAAGCTTGCCTCCTTAAACTCTGGCTTAAAGCTAAACTCTG
CCTTCGGCTGCTGGACTCCGGCTCCATTTGCCGCCGCTGCCGCCGCCGCT
GCTGCCGATGCGGCGCTAAGTGCTGCCAGGTTGCCGAGCATGGAGGAATT
CTGGGTCATTCCCGGATAGAGGTTCTGGTAGAAGAGGGGATTCTGCAACT
GGAAGAGGGCCATCAGGTGGGTGAGCTGGAAGTTAGGGGCTGTGGGATCC
ACTCCAGGAGCGGCGGCAGCGGGCAGGAGACCGGGAAAGAGTCCACTTGT
CAGCGGATGCACAGCGGCTGCTGGCTGGGACTGGGGCAGGAGCATGGCGG
GATTAGAGGACTCGTCTTCGACTTTCAGGCGCTTGGCTTCCGACTGCTGA
GCGTCGGCTGGCAGTTGGATTTTCTTGGGTGGCCTGCCGCGTTTCCGAGC
CAGGAAGTGCTCGGCGGACAAAGAGGAGAGTGGAGTGGAGGTGTTGCTGC
CGCCGCATACAGAGCTGCTGCTCTGGGATTGACTAAGGCTGGTGGGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGGGGCATGGCATCCAGGGAGGACTC
CTCCACGTCCTGCTTGATCTTAAACTGCTGGTACGCCTGCTCTCCGTCCT
GACGATCGTGCTTTCTCTTGTGGCTGATCATCTGGCTGCTGGAGTGCAGG
ATGTAGTCGCAGCCCTCGCGGACGCAGTGGATGTGGTTGCAGACGGTGGA
GAACTTGCAGGCGTCGAAGGGACATACCTCGGTCTTCAGGATCTTCTTGA
AGCCGTCCATCTTCAGCTGG
BO10966.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2102-PA | 2382 | cas-RA | 1578..2379 | 820..19 | 4010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RC | 2845 | CG2102-RC | 1465..2266 | 820..19 | 4010 | 100 | Minus |
| cas-RA | 3151 | CG2102-RA | 1771..2572 | 820..19 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5714024..5714426 | 418..820 | 2015 | 100 | Plus |
| 3R | 32079331 | 3R | 5713554..5713952 | 19..417 | 1995 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 02:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 877..943 | 61..128 | 112 | 66.7 | Plus |
BO10966.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:33 Download gff for
BO10966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-PA | 1578..2382 | 18..820 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:37 Download gff for
BO10966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2102-PA | 1578..2382 | 18..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:47:45 Download gff for
BO10966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 1771..2572 | 19..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:21:44 Download gff for
BO10966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 1771..2572 | 19..820 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:21:44 Download gff for
BO10966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5713554..5713952 | 19..417 | 100 | <- | Plus |
| 3R | 5714024..5714426 | 418..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:47:45 Download gff for
BO10966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1539276..1539674 | 19..417 | 100 | <- | Plus |
| arm_3R | 1539746..1540148 | 418..820 | 100 | | Plus |
BO10966.5prime Sequence
900 bp (721 high quality bases) assembled on 2006-04-19
> BO10966.5prime
GAAGTTATCAGTCGACATGTCCAACCAAATGGAGTTTATTATGCAACTCT
ACATGATGAACTTGATGAAGCAGCAGCAGCAAATGCAGCTCCAGCTTCCG
CAGCAGCAACAGCAGCAGCAGCTGGCTGGATACACTTACACACAGAACGA
GGATATCTCTAGCAGCACATCCGTGCAGCAGCAACAGCAGCAGCAGCAGG
AGCAACTGCAGCAGCCACAGCCAGATCTCCGCAAGACAAGAACGCACAAG
CGCATTAGCTCGCAAAACACCAACTGTAGTAGTAGCCGTAGTTGTAGTCC
CAATAGTAATTTGATTGCTTTTCAACCACAACAATACCCAGGCGCTACAG
CGGCAACTCCTTCCACTCCCAACAGCCACCCCAGCAACCTGGTCAACCAG
ATGCTGCTCCAAAGCCTGCCGCCGCTGACGCAGCTCATGTTGCAGCAGCA
GCAGCAGCAACATTTGCTGACCACCTCCAACCTTCTACTAACACCCACCC
ACACCCCCAGTTCGCTGGGCAAGCAGGATCCACTGCAGCATCCGTTGTTG
CTGGGCCAGTTTGCCGGCTCCGAACAGATGGCCACAAATAACTTCCTTCA
ATCATCCACAGTGACCTCCACGCCCATCGAGAGAGAGAAGGCAGCCACAC
CAGCACCCTCCGCCGGAGCAACTGCCGGCAACCTTTCGGCGGCCCAGGTC
AAGTTTGAGCAGGAGTCCGCCGACGACGATGAGGACGATGATAAGCCGCT
GTCCAGCCTCACCAGCTGCAGCTCCTCGGGCCACACCAACGCCAGCTCCG
AGAAGCTGCTGTTGTCGGGCGTCCATCCGCTGGAGTCAACCACCGACAGC
CTAGACTCACCCAACATGTATACGCCCGTCAAGCAGCCGGCGGACTCATC
BO10966.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2102-PA | 2382 | cas-RA | 1..884 | 17..900 | 4395 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RA | 3151 | CG2102-RA | 194..1077 | 17..900 | 4405 | 99.9 | Plus |
| cas-RC | 2845 | CG2102-RC | 194..482 | 17..305 | 1445 | 100 | Plus |
| cas-RC | 2845 | CG2102-RC | 483..771 | 612..900 | 1430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5715761..5716612 | 868..17 | 4245 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:50:00 has no hits.
BO10966.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:34 Download gff for
BO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:38 Download gff for
BO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2102-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:06 Download gff for
BO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..1077 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:08 Download gff for
BO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..1077 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:08 Download gff for
BO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5715761..5716612 | 17..868 | 99 | | Minus |
| 3R | 5715190..5715221 | 869..900 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:06 Download gff for
BO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1540912..1540943 | 869..900 | 100 | <- | Minus |
| arm_3R | 1541483..1542334 | 17..868 | 99 | | Minus |
BO10966.complete Sequence
2413 bp (2413 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631940
> BO10966.complete
GAAGTTATCAGTCGACATGTCCAACCAAATGGAGTTTATTATGCAACTCT
ACATGATGAACTTGATGAAGCAGCAGCAGCAAATGCAGCTCCAGCTTCCG
CAGCAGCAACAGCAGCAGCAGCTGGCTGGATACACTTACACACAGAACGA
GGATATCTCTAGCAGCACATCCGTGCAGCAGCAACAGCAGCAGCAGCAGG
AGCAACTGCAGCAGCCACAGCCAGATCTCCGCAAGACAAGAACGCACAAG
CGCATTAGCTCGCAAAACACCAACTGTAGTAGTAGCCGTAGTTGTAGTCC
CAATAGTAATTTGATTGCTTTTCAACCACAACAATACCCAGGCGCTACAG
CGGCAACTCCTTCCACTCCCAACAGCCACCCCAGCAACCTGGTCAACCAG
ATGCTGCTCCAAAGCCTGCCGCCGCTGACGCAGCTCATGTTGCAGCAGCA
GCAGCAGCAACATTTGCTGACCACCTCCAACCTTCTACTAACACCCACCC
ACACCCCCAGTTCGCTGGGCAAGCAGGATCCACTGCAGCATCCGTTGTTG
CTGGGCCAGTTTGCCGGCTCCGAACAGATGGCCACAAATAACTTCCTTCA
ATCATCCACAGTGACCTCCACGCCCATCGAGAGAGAGAAGGCAGCCACAC
CAGCACCCTCCGCCGGAGCAACTGCCGGCAACCTTTCGGCGGCCCAGGTC
AAGTTTGAGCAGGAGTCCGCCGACGACGATGAGGACGATGATAAGCCGCT
GTCCAGCCTCACCAGCTGCAGCTCCTCGGGCCACACCAACGCCAGCTCCG
AGAAGCTGCTGTTGTCGGGCGTCCATCCGCTGGAGTCAACCACCGACAGC
CTAGACTCACCCAGCATGTATACGCCCGTCAAGCAGCCGGCGGACTCATC
GTACGGACTCATCACACCCGTCGACAGTGATCTGACCCCCAACACACCCC
TCCAACCGACCCAAACAATATCCCTGCTGACGCCGCCGTCGAGTGAGCAG
AGCAAGAGCCTGGTGAGCCTCTCGGCGGCCAGCGGCCTGGATGCTCTGCT
CCAGAACGAGGAGGTACTGAAGAACCTGCGGAAAGTGTCCTCCTACCTGG
AGTGCGAGAACAGCCTGTGCAGGCAGGAGAACCTGCGGGAGCACTTCCAT
TGCCACGAGGAGCCCTGCCAGGGCAAGATCCTGAGCAAGAAGGACGACAT
CATCCGGCACCTGAAGTGGCACAAGAAGCGCAAGGAAAGCCTCAAGCTGG
GCTTTGCCCGCTTCTCCTCCTCGGACGACTGTGCACCAGCCTACGGAGAG
GGTTGCGCCTACAACTGGAAACAGACCCACTACCACTGCGTCTACGAGCA
CTGTCCCAAGGTGTATGTGAGCACCAGTGACGTCCAGATGCATGCCAATT
TCCACCGCAAGGACTCCGAGATCGTGAACGAGGGCTTCCGGCGCTTCCGG
GCGCACGAGACCTGCCGCATCGAGGATTGCCCCTTTTTCGGCAAGAAGAT
CTCCCACTACCACTGCTGTCGCGAGGGATGCACCCACACCTTCAAGAACA
AGGCCGATATGGACAAGCACAAAACTTACCATCTGAAGGACCACCAGCTG
AAGATGGACGGCTTCAAGAAGATCCTGAAGACCGAGGTATGTCCCTTCGA
CGCCTGCAAGTTCTCCACCGTCTGCAACCACATCCACTGCGTCCGCGAGG
GCTGCGACTACATCCTGCACTCCAGCAGCCAGATGATCAGCCACAAGAGA
AAGCACGATCGTCAGGACGGAGAGCAGGCGTACCAGCAGTTTAAGATCAA
GCAGGACGTGGAGGAGTCCTCCCTGGATGCCATGCCCCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCCCACCAGCCTTAGTCAATCCCAGAGCAGCAGC
TCTGTATGCGGCGGCAGCAACACCTCCACTCCACTCTCCTCTTTGTCCGC
CGAGCACTTCCTGGCTCGGAAACGCGGCAGGCCACCCAAGAAAATCCAAC
TGCCAGCCGACGCTCAGCAGTCGGAAGCCAAGCGCCTGAAAGTCGAAGAC
GAGTCCTCTAATCCCGCCATGCTCCTGCCCCAGTCCCAGCCAGCAGCCGC
TGTGCATCCGCTGACAAGTGGACTCTTTCCCGGTCTCCTGCCCGCTGCCG
CCGCTCCTGGAGTGGATCCCACAGCCCCTAACTTCCAGCTCACCCACCTG
ATGGCCCTCTTCCAGTTGCAGAATCCCCTCTTCTACCAGAACCTCTATCC
GGGAATGACCCAGAATTCCTCCATGCTCGGCAACCTGGCAGCACTTAGCG
CCGCATCGGCAGCAGCGGCGGCGGCAGCGGCGGCAAATGGAGCCGGAGTC
CAGCAGCCGAAGGCAGAGTTTAGCTTTAAGCCAGAGTTTAAGGAGGCAAG
CTTTCTAGACCAT
BO10966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RA | 2382 | CG2102-PA | 1..2379 | 17..2395 | 11895 | 100 | Plus |
| cas-RC | 2076 | CG2102-PC | 290..2073 | 612..2395 | 8920 | 100 | Plus |
| cas-RC | 2076 | CG2102-PC | 1..289 | 17..305 | 1445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RA | 3151 | CG2102-RA | 194..2572 | 17..2395 | 11895 | 100 | Plus |
| cas-RC | 2845 | CG2102-RC | 483..2266 | 612..2395 | 8920 | 100 | Plus |
| cas-RC | 2845 | CG2102-RC | 194..482 | 17..305 | 1445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5715761..5716612 | 868..17 | 4260 | 100 | Minus |
| 3R | 32079331 | 3R | 5714528..5715222 | 1562..868 | 3475 | 100 | Minus |
| 3R | 32079331 | 3R | 5714024..5714458 | 1996..1562 | 2175 | 100 | Minus |
| 3R | 32079331 | 3R | 5713554..5713952 | 2395..1997 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:51 has no hits.
BO10966.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:06 Download gff for
BO10966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 1..2382 | 17..2396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:13:03 Download gff for
BO10966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 689..3067 | 17..2395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:25 Download gff for
BO10966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..2572 | 17..2397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:06 Download gff for
BO10966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 689..3067 | 17..2395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:37 Download gff for
BO10966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..2572 | 17..2397 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:37 Download gff for
BO10966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5713552..5713952 | 1997..2397 | 99 | <- | Minus |
| 3R | 5714024..5714457 | 1563..1996 | 100 | <- | Minus |
| 3R | 5714528..5715221 | 869..1562 | 100 | <- | Minus |
| 3R | 5715761..5716612 | 17..868 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:25 Download gff for
BO10966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1539274..1539674 | 1997..2397 | 99 | <- | Minus |
| arm_3R | 1539746..1540179 | 1563..1996 | 100 | <- | Minus |
| arm_3R | 1540250..1540943 | 869..1562 | 100 | <- | Minus |
| arm_3R | 1541483..1542334 | 17..868 | 100 | | Minus |
BO10966.pep Sequence
Translation from 16 to 2413
> BO10966.pep
MSNQMEFIMQLYMMNLMKQQQQMQLQLPQQQQQQQLAGYTYTQNEDISSS
TSVQQQQQQQQEQLQQPQPDLRKTRTHKRISSQNTNCSSSRSCSPNSNLI
AFQPQQYPGATAATPSTPNSHPSNLVNQMLLQSLPPLTQLMLQQQQQQHL
LTTSNLLLTPTHTPSSLGKQDPLQHPLLLGQFAGSEQMATNNFLQSSTVT
STPIEREKAATPAPSAGATAGNLSAAQVKFEQESADDDEDDDKPLSSLTS
CSSSGHTNASSEKLLLSGVHPLESTTDSLDSPSMYTPVKQPADSSYGLIT
PVDSDLTPNTPLQPTQTISLLTPPSSEQSKSLVSLSAASGLDALLQNEEV
LKNLRKVSSYLECENSLCRQENLREHFHCHEEPCQGKILSKKDDIIRHLK
WHKKRKESLKLGFARFSSSDDCAPAYGEGCAYNWKQTHYHCVYEHCPKVY
VSTSDVQMHANFHRKDSEIVNEGFRRFRAHETCRIEDCPFFGKKISHYHC
CREGCTHTFKNKADMDKHKTYHLKDHQLKMDGFKKILKTEVCPFDACKFS
TVCNHIHCVREGCDYILHSSSQMISHKRKHDRQDGEQAYQQFKIKQDVEE
SSLDAMPQQQQQQQQQQPTSLSQSQSSSSVCGGSNTSTPLSSLSAEHFLA
RKRGRPPKKIQLPADAQQSEAKRLKVEDESSNPAMLLPQSQPAAAVHPLT
SGLFPGLLPAAAAPGVDPTAPNFQLTHLMALFQLQNPLFYQNLYPGMTQN
SSMLGNLAALSAASAAAAAAAAANGAGVQQPKAEFSFKPEFKEASFLDH
BO10966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-PA | 793 | CG2102-PA | 1..793 | 1..793 | 4153 | 100 | Plus |
| cas-PC | 691 | CG2102-PC | 1..691 | 1..793 | 3182 | 81.1 | Plus |
| CG7512-PB | 540 | CG7512-PB | 335..528 | 403..579 | 203 | 25.1 | Plus |
| Spps-PA | 968 | CG5669-PA | 375..824 | 13..465 | 177 | 22.6 | Plus |
| Spps-PB | 985 | CG5669-PB | 375..824 | 13..465 | 177 | 22.6 | Plus |
