Clone BO10969 Report

Search the DGRC for BO10969

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptActn-RA
Protein status:BO10969.pep: validated full length
Sequenced Size:2719

Clone Sequence Records

BO10969.3prime Sequence

836 bp (766 high quality bases) assembled on 2006-04-19

> BO10969.3prime
ATGGTCTAGAAAGCTTGCCAAGTCGGTCTCGCCGTAGAGAGCTGTGCTGA
AGGACATGTAGTCCAGGGCGCCGGGCACTCCGTTGGGTCCCTTATAGGGC
GGCATGCGCTGGATGCAGTACTCGGCCTGGTCTGGCGGCAACTCGCGACG
CAGTTCGTCGGGCAAAATGTATGGCTTGTCGGCTGCCAGGATTCGGAAGG
AGTCGATGACTTGTTCGGCAGTGTCGGTATCGGTGCTCTCGCGGGTCATG
AAGTCGAGGAAGGCGTCGAAGTGCACGTAGCCAGTGTTGTTGGGATCGAC
GACGGCGAGGATGCGCTGGAAGTCCAAATCACCCTGGCGATCCTTGCCAA
TCGAGTAGCCCAACGAGACCAAGCACGACTTGAACTCCTCGGGCGACAGT
CGGCCGGTGCGGTTCTTGTCGAAGTGGTTGAAGCTGCTGCGGAATTCGTT
CAGCTGCTCCTGGCTAATGCCCTTGGAGTCGCGGGTGAGAATCTGGTTCT
CCACCTCGTTGATGTTGCGGTTGATAGATGTAAGCAGCTGCTCCCAGCCG
ACGCGCAGCGTTTCCATCGTGTAGTTGGTGTATCGGTTCTCGAAGATCAT
CGATTCCTGCACCGCTTGGTGGATCTTCTCCAGCTCCTCAATGTTCGGCT
TGTAGGCGTAGACGGCCTGCTCGTACTCCTTGAGCCGGTGCAGTTGGTCC
TCCAGCGATCCCTGCAGTCCCATACCGATGGCCGTAACAGCATCCATTTG
CCGCTCGATCCAGGGGCCGAACATGTTGGCCTTCTCGGCAAACTGACGGC
GGAGCATTTCGTTGTTCTGTTGCTTGCGCAGCTCGT

BO10969.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4376-PC 2754 Actn-RC 1934..2751 836..19 4040 99.7 Minus
CG4376-PB 2688 Actn-RB 1868..2685 836..19 4040 99.7 Minus
CG4376-PA 2688 Actn-RA 1868..2685 836..19 4040 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-RJ 3366 CG4376-RJ 2121..2938 836..19 4060 99.8 Minus
Actn-RI 3516 CG4376-RI 2271..3088 836..19 4060 99.8 Minus
Actn-RH 3351 CG4376-RH 2106..2923 836..19 4060 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2025775..2026436 175..836 3280 99.7 Plus
X 23542271 X 2025544..2025701 19..176 790 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:55:12 has no hits.

BO10969.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:38 Download gff for BO10969.3prime
Subject Subject Range Query Range Percent Splice Strand
Actn-PA 1868..2688 15..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:45 Download gff for BO10969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4376-PA 1868..2688 15..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:25 Download gff for BO10969.3prime
Subject Subject Range Query Range Percent Splice Strand
Actn-RH 2106..2927 14..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:37:47 Download gff for BO10969.3prime
Subject Subject Range Query Range Percent Splice Strand
Actn-RH 2106..2927 14..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:37:47 Download gff for BO10969.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2025540..2025699 14..174 98 <- Plus
X 2025775..2026436 175..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:25 Download gff for BO10969.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1919573..1919732 14..174 98 <- Plus
arm_X 1919808..1920469 175..836 99   Plus

BO10969.5prime Sequence

899 bp (870 high quality bases) assembled on 2006-04-19

> BO10969.5prime
GAAGTTATCAGTCGACATGATGATGGAGAACGGACTCTCCATGGAGTACG
GAGATGGCTACATGGAGCAGGAGGAGGAGTGGGAGCGCGAGGGCCTGCTC
GATCCTGCGTGGGAGAAGCAACAGAAGAAGACATTTACCGCCTGGTGTAA
CAGCCATTTGCGCAAGGCCGGTACAGCCATCGACAACATCGAGGAGGACT
TCCGCAACGGCCTCAAGCTGATGCTGCTGCTGGAGGTGATCTCCGGCGAG
ACGCTCCCCAAGCCCGATCGCGGCAAGATGCGCTTCCACAAGATCGCCAA
CGTGAACAAGGCTCTCGACTTCATCGCCTCCAAGGGCGTCCACCTGGTCT
CTATCGGCGCCGAGGAGATCGTCGATGGAAACTTGAAGATGACTCTGGGT
ATGATCTGGACGATTATCCTGCGCTTCGCCATTCAGGACATCTCCGTGGA
GGAGATGACCGCCAAGGAGGGTCTGCTGCTGTGGTGCCAGCGCAAGACGG
CTCCCTACAAGAACGTCAACGTACAGAACTTCCATCTGTCGTTCAAGGAT
GGTCTGGCCTTCTGCGCCCTTATCCATCGCCATCGTCCAGATCTAATCGA
CTACGCCAAGCTGTCCAAAGACAATCCTCTGGAGAATCTTAATACTGCCT
TCGATGTGGCCGAGAAGTACCTGGATATTCCGCGCATGTTGGATCCAGAT
GATCTCCAGAATACAGCTTTGCCCGATGAGCGGGCGGTGATGACGTATGT
GTCCTCGTACTATCACTGCTTCAGTGGCGCCCAAAAGGCGGAAACCGCTG
CCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGAGAACGAACGCCTC
ATGGAGGAGTACGAGCGTCTGGCCAGTGATTTGCTGGAGTGGATCCGTC

BO10969.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4376-PA 2688 Actn-RA 1..883 17..899 4415 100 Plus
CG4376-PB 2688 Actn-RB 1..687 17..703 3435 100 Plus
CG4376-PC 2754 Actn-RC 1..687 17..703 3435 100 Plus
CG4376-PB 2688 Actn-RB 770..883 786..899 570 100 Plus
CG4376-PC 2754 Actn-RC 838..949 788..899 560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-RF 3877 CG4376-RF 399..1281 17..899 4415 100 Plus
Actn-RA 3511 CG4376-RA 399..1281 17..899 4415 100 Plus
Actn-RI 3516 CG4376-RI 404..1286 17..899 3950 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2030442..2030861 548..129 2100 100 Minus
X 23542271 X 2030215..2030370 701..546 780 100 Minus
X 23542271 X 2034955..2035068 130..17 570 100 Minus
X 23542271 X 2027935..2028033 880..782 480 99 Minus
X 23542271 X 2028664..2028751 788..701 440 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:28:44 has no hits.

BO10969.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:40 Download gff for BO10969.5prime
Subject Subject Range Query Range Percent Splice Strand
Actn-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:46 Download gff for BO10969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4376-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:45:01 Download gff for BO10969.5prime
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 393..1281 9..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:32:39 Download gff for BO10969.5prime
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 393..1281 9..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:32:39 Download gff for BO10969.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2027853..2027871 881..899 100 <- Minus
X 2027935..2028027 788..880 100 <- Minus
X 2028665..2028750 702..787 100 <- Minus
X 2030215..2030368 548..701 100 <- Minus
X 2030443..2030859 131..547 100 <- Minus
X 2034955..2035074 9..130 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:45:01 Download gff for BO10969.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1921886..1921904 881..899 100 <- Minus
arm_X 1921968..1922060 788..880 100 <- Minus
arm_X 1922698..1922783 702..787 100 <- Minus
arm_X 1924248..1924401 548..701 100 <- Minus
arm_X 1924476..1924892 131..547 100 <- Minus
arm_X 1928988..1929107 9..130 96   Minus

BO10969.complete Sequence

2719 bp (2719 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631941

> BO10969.complete
GAAGTTATCAGTCGACATGATGATGGAGAACGGACTCTCCATGGAGTACG
GAGATGGCTACATGGAGCAGGAGGAGGAGTGGGAGCGCGAGGGCCTGCTC
GATCCTGCGTGGGAGAAGCAACAGAAGAAGACATTTACCGCCTGGTGTAA
CAGCCATTTGCGCAAGGCCGGTACAGCCATCGACAACATCGAGGAGGACT
TCCGCAACGGCCTCAAGCTGATGCTGCTGCTGGAGGTGATCTCCGGCGAG
ACGCTCCCCAAGCCCGATCGCGGCAAGATGCGCTTCCACAAGATCGCCAA
CGTGAACAAGGCTCTCGACTTCATCGCCTCCAAGGGCGTCCACCTGGTCT
CTATCGGCGCCGAGGAGATCGTCGATGGAAACTTGAAGATGACTCTGGGT
ATGATCTGGACGATTATCCTGCGCTTCGCCATTCAGGACATCTCCGTGGA
GGAGATGACCGCCAAGGAGGGTCTGCTGCTGTGGTGCCAGCGCAAGACGG
CTCCCTACAAGAACGTCAACGTACAGAACTTCCATCTGTCGTTCAAGGAT
GGTCTGGCCTTCTGCGCCCTTATCCATCGCCATCGTCCAGATCTAATCGA
CTACGCCAAGCTGTCCAAAGACAATCCTCTGGAGAATCTTAATACTGCCT
TCGATGTGGCCGAGAAGTACCTGGATATTCCGCGCATGTTGGATCCAGAT
GATCTCCAGAATACAGCTTTGCCCGATGAGCGGGCGGTGATGACGTATGT
GTCCTCGTACTATCACTGCTTCAGTGGCGCCCAAAAGGCGGAAACCGCTG
CCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGAGAACGAACGCCTC
ATGGAGGAGTACGAGCGTCTGGCCAGTGATTTGCTGGAGTGGATCCGTCG
CACCATGCCCTGGTTGAACTCGCGCCAGGCCGACAACTCGCTGGCAGGTG
TGCAGAAGAAGCTGGAGGAGTACCGCACCTACCGTCGCAAGCACAAGCCA
CCACGTGTGGAGCAGAAGGCCAAGCTGGAGACCAACTTCAACACGCTGCA
GACCAAGCTGCGCCTGTCCAACCGGCCCGCCTACCTGCCCACCGAGGGCA
AGACCGTGTCCGACATCTCCAACTCGTGGAAGGGCCTGGAGCTGGCCGAG
AAGGCCTTTGAGGAATGGCTGCTGGCCGAGACCATGCGCCTGGAGCGCCT
TGAACATCTGGCCCAGAAGTTCAAGCACAAGGCCGATGCCCACGAGGACT
GGACGCGTGGCAAGGAGGAGATGCTGCAGTCGCAGGACTTCCGCCAGTGC
AAGCTCAACGAGCTGAAGGCCCTAAAGAAGAAGCACGAAGCCTTTGAGTC
TGACCTGGCCGCCCACCAGGATCGTGTGGAGCAGATTGCCGCCATCGCCC
AGGAGCTTAACACTCTGGAGTACCATGACTGTGTGTCTGTGAACGCCAGG
TGCCAGCGCATCTGCGACCAATGGGATCGCTTGGGTGCTCTTACCCAGCG
CAGGCGCACCGCCTTAGACGAGGCCGAGCGAATCCTGGAGAAGATCGACA
TCTTGCATTTGGAGTTCGCGAAGCGTGCGGCGCCGTTCAACAACTGGCTG
GATGGTACGCGCGAGGATCTTGTGGACATGTTTATTGTACACACCATGGA
GGAAATCCAAGGCCTGATCCAGGCGCACGACCAGTTCAAGGCGACCCTGG
GTGAGGCCGACAAGGAGTTCAACCTGATCGTGAACCTGGTCCGCGAAGTG
GAGTCGATTGTGAAGCAGCACCAGATCCCCGGCGGCCTAGAGAACCCCTA
CACCACCCTGACCGCCAACGACATGACGCGCAAGTGGAGCGACGTCCGCC
AACTGGTGCCCCAACGCGACCAGACTTTGGCCAACGAGCTGCGCAAGCAA
CAGAACAACGAAATGCTCCGCCGTCAGTTTGCCGAGAAGGCCAACATTGT
CGGCCCCTGGATCGAGCGGCAAATGGATGCTGTTACGGCCATCGGTATGG
GACTGCAGGGATCGCTGGAGGACCAACTGCACCGGCTCAAGGAGTACGAG
CAGGCCGTCTACGCCTACAAGCCGAACATTGAGGAGCTGGAGAAGATCCA
CCAAGCGGTGCAGGAATCGATGATCTTCGAGAACCGATACACCAACTACA
CGATGGAAACGCTGCGCGTCGGCTGGGAGCAGCTGCTTACATCTATCAAC
CGCAACATCAACGAGGTGGAGAACCAGATTCTCACCCGCGACTCCAAGGG
CATTAGCCAGGAGCAGCTGAACGAATTCCGCAGCAGCTTCAACCACTTCG
ACAAGAACCGCACCGGCCGACTGTCGCCCGAGGAGTTCAAGTCGTGCTTG
GTCTCGTTGGGCTACTCGATTGGCAAGGATCGCCAGGGTGATTTGGACTT
CCAGCGCATCCTCGCCGTCGTCGATCCCAACAACACTGGCTACGTGCACT
TCGACGCCTTCCTCGACTTCATGACCCGCGAGAGCACCGATACCGACACT
GCCGAACAAGTCATCGACTCCTTCCGAATCCTGGCAGCCGACAAGCCATA
CATTTTGCCCGACGAACTGCGTCGCGAGTTGCCGCCAGACCAGGCCGAGT
ACTGCATCCAGCGCATGCCGCCCTATAAGGGACCCAACGGAGTGCCCGGC
GCCCTGGACTACATGTCCTTCAGCACAGCTCTCTACGGCGAGACCGACTT
GGCAAGCTTTCTAGACCAT

BO10969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-RA 2688 CG4376-PA 1..2685 17..2701 13425 100 Plus
Actn-RF 2694 CG4376-PF 1..2691 17..2701 13330 99.8 Plus
Actn-RI 2688 CG4376-PI 1..2685 17..2701 12960 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-RA 3511 CG4376-RA 399..3083 17..2701 13425 100 Plus
Actn-RF 3877 CG4376-RF 399..3089 17..2701 13330 99.8 Plus
Actn-RI 3516 CG4376-RI 404..3088 17..2701 12960 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2025775..2026909 2545..1411 5675 100 Minus
X 23542271 X 2030442..2030861 548..129 2100 100 Minus
X 23542271 X 2027520..2027871 1232..881 1760 100 Minus
X 23542271 X 2027284..2027464 1410..1230 905 100 Minus
X 23542271 X 2025544..2025701 2701..2544 790 100 Minus
X 23542271 X 2030215..2030370 701..546 780 100 Minus
X 23542271 X 2034955..2035068 130..17 570 100 Minus
X 23542271 X 2027935..2028033 880..782 480 99 Minus
X 23542271 X 2028664..2028751 788..701 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:40:32 has no hits.

BO10969.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:50 Download gff for BO10969.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 1..2688 17..2705 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:45 Download gff for BO10969.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 393..3087 9..2706 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:31 Download gff for BO10969.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 399..3083 17..2703 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:50 Download gff for BO10969.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 393..3087 9..2706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:23 Download gff for BO10969.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 399..3083 17..2703 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:23 Download gff for BO10969.complete
Subject Subject Range Query Range Percent Splice Strand
X 2030215..2030368 548..701 100 <- Minus
X 2027521..2027871 881..1231 100 <- Minus
X 2034955..2035068 17..130 100   Minus
X 2027935..2028027 788..880 100 <- Minus
X 2028665..2028750 702..787 100 <- Minus
X 2025542..2025699 2546..2703 98 <- Minus
X 2025775..2026909 1411..2545 100 <- Minus
X 2027284..2027462 1232..1410 100 <- Minus
X 2030443..2030859 131..547 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:31 Download gff for BO10969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1919575..1919732 2546..2703 98 <- Minus
arm_X 1919808..1920942 1411..2545 100 <- Minus
arm_X 1921317..1921495 1232..1410 100 <- Minus
arm_X 1921554..1921904 881..1231 100 <- Minus
arm_X 1921968..1922060 788..880 100 <- Minus
arm_X 1922698..1922783 702..787 100 <- Minus
arm_X 1924248..1924401 548..701 100 <- Minus
arm_X 1924476..1924892 131..547 100 <- Minus
arm_X 1928988..1929101 17..130 100   Minus

BO10969.pep Sequence

Translation from 16 to 2719

> BO10969.pep
MMMENGLSMEYGDGYMEQEEEWEREGLLDPAWEKQQKKTFTAWCNSHLRK
AGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKAL
DFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAK
EGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLS
KDNPLENLNTAFDVAEKYLDIPRMLDPDDLQNTALPDERAVMTYVSSYYH
CFSGAQKAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWL
NSRQADNSLAGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRL
SNRPAYLPTEGKTVSDISNSWKGLELAEKAFEEWLLAETMRLERLEHLAQ
KFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESDLAAH
QDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTAL
DEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGL
IQAHDQFKATLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTLTA
NDMTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANIVGPWIE
RQMDAVTAIGMGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQE
SMIFENRYTNYTMETLRVGWEQLLTSINRNINEVENQILTRDSKGISQEQ
LNEFRSSFNHFDKNRTGRLSPEEFKSCLVSLGYSIGKDRQGDLDFQRILA
VVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAADKPYILPDE
LRRELPPDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGETDLASFLD
H

BO10969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-PA 895 CG4376-PA 1..895 1..895 4678 100 Plus
Actn-PF 897 CG4376-PF 1..897 1..895 4665 99.8 Plus
Actn-PI 895 CG4376-PI 1..895 1..895 4636 99.1 Plus
Actn-PD 895 CG4376-PD 1..895 1..895 4636 99.1 Plus
Actn-PB 895 CG4376-PB 1..895 1..895 4636 99.1 Plus