Clone BO10971 Report

Search the DGRC for BO10971

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:71
Vector:pDNR-Dual
Associated Gene/Transcriptcoro-RA
Protein status:BO10971.pep: validated full length
Sequenced Size:1618

Clone Sequence Records

BO10971.3prime Sequence

831 bp (786 high quality bases) assembled on 2006-04-19

> BO10971.3prime
ATGGTCTAGAAAGCTTGCGTCCTCGTCCTTTGACGTTCCGGCTGATGTGG
ACGCGTGGTCGTTGGCACTTTCACTGGCTTTGCCGTCAGACGTGGCTGCT
CCCGCTGAAGCCGGCGCAGCATCGCTTCCATTCTTGTTGCGGGCGTCCTC
CTTGGCCTCCAGAGCGCGGATGCGGTTCTCTTGCTTGACGATGATCGCCT
TAAGTTTGCGGATCTCGTCTTGTATGGTGCGCAGGTCCTTTTCCGATAAA
ACCGCTGCAGGCGGTCCACCTTCGCTAGCCTCATTGTTATTTCCGGACGC
AAAGTTGCCGCCGCCCGCGCTGCTGCTCGTTGCACCGGAGCTAGCGCTGT
CGCCTCTAGGCTTGTTCAGGATGTTGCCCGCCTTCTTCGCTGGTAGCGAT
TTGTTTACCGACGAGGACACGTAGCCACCTTTGAGCGAAAATGTGATCGG
ATCCGCATCCTTGCCATCGATCCACTCCTCCGCGGTGATGGCAGCGTCTT
CCGCTAGCGTATCGGGGTAGAGATCCTCCTGGAAAAGATCCGATTTGCGC
GGCACAGTCATCGAGATGACCTGACACAGACCGTTGTTGTTCATGCGATA
GAACTTGGCGACCTCGCAGGTGGTCACATCACAGCCTCGCTTGGGCATCA
GACCAATACCACGCTGCGGCTCTGTAGTCTGAAACGTGTTTATGTAGTGC
ACAAAAGGAGGTTCGGGCGTTACCTCGAAATACCGAATGACCGAGTCACC
TTTTCCACACAAGTAGATCATGTTCGTGTCTGCGTCGTAAAGAGGGAACA
TTACGCCGTTGGACGTGTCCAGCTCCACCAT

BO10971.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9446-PA 1587 coro-RA 772..1584 831..19 4065 100 Minus
CG9446-PB 1587 coro-RB 772..1584 831..19 4065 100 Minus
CG9446-PC 1587 coro-RC 772..1584 831..19 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
coro-RD 2649 CG9446-RD 1032..1844 831..19 4065 100 Minus
coro-RC 2610 CG9446-RC 993..1805 831..19 4065 100 Minus
coro-RB 2790 CG9446-RB 914..1726 831..19 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6864277..6864573 429..725 1485 100 Plus
2R 25286936 2R 6863065..6863290 19..244 1130 100 Plus
2R 25286936 2R 6863347..6863533 243..429 935 100 Plus
2R 25286936 2R 6864634..6864743 722..831 550 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:27:21 has no hits.

BO10971.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:43 Download gff for BO10971.3prime
Subject Subject Range Query Range Percent Splice Strand
coro-PB 772..1587 18..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:51 Download gff for BO10971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9446-PC 772..1587 18..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:56:09 Download gff for BO10971.3prime
Subject Subject Range Query Range Percent Splice Strand
coro-RB 914..1726 19..831 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:17 Download gff for BO10971.3prime
Subject Subject Range Query Range Percent Splice Strand
coro-RB 914..1726 19..831 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:17 Download gff for BO10971.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6863065..6863289 19..243 100 <- Plus
2R 6863348..6863533 244..429 100 <- Plus
2R 6864278..6864571 430..723 100 <- Plus
2R 6864636..6864743 724..831 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:56:09 Download gff for BO10971.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2750570..2750794 19..243 100 <- Plus
arm_2R 2750853..2751038 244..429 100 <- Plus
arm_2R 2751783..2752076 430..723 100 <- Plus
arm_2R 2752141..2752248 724..831 100   Plus

BO10971.5prime Sequence

932 bp (830 high quality bases) assembled on 2006-04-19

> BO10971.5prime
GAAGTTATCAGTCGACATGTCATTTCGCGTAGTGCGCAGTTCCAAGTTCC
GCCACGTCTACGGACAGGCTCTCAAGCGGGAGCAGTGCTACGACAACATA
CGGGTATCCAAGTCCAGCTGGGACTCCACATTCTGCGCGGTGAATCCCAA
GTTCCTGGCCATTATCGTAGAGTCGGCGGGCGGCGGAGCCTTCATCGTCC
TGCCACACAACAAAGTTGGTCGCATTGCGGCTGACCACCCTTTGGTGGGC
GGTCACAAGGGTCCTGTGCTGGACATCGCCTGGTGCCCCCACAACGACAA
CGTGATCGCCTCCGGCTCAGAGGACTGTGTGGTCAAAGTGTGGCAGATCC
CCGATGGCGGGCTGTCGCGAACACTCACCGAACCCGTGGTCGACCTGGTT
TTCCACCAGCGTCGCGTGGGTCTGGTGTTGTGGCATCCCTCTGCGCTCAA
CGTGCTGCTTACCGCCGGCTCCGATAACCAGGTCGTGATTTGGAACGTGG
GCACTGGTGAAATCCTCGTGCACATCGACTCCCATCCGGACATCGTTTAC
AGCGCCTGCTTCAACTGGGATGGCTCTAAGTTGGTTACCACCTGCAAGGA
TAAAAAGATCCGCATCTACGATCCGCGCACTGCCGAGCTGGAGAGCGAAG
CCATGTGTCATGAGGGCTCCAAGGCCACGAGGGCCATTTTCCTACGTCAC
GGTCTGATCTTCACCACAGGCTTCAACCGTAGCTCGGAGCGTCAGTACTC
CCTGCGCGCACCGGATGCCCTTAACGAACCCATTGTCATGGTGGAGCTGG
ACACGTCCAACGGCGTAATGTTCCCTCTTTACGACGCAGACACGAACATG
ATCTACTTGTGTGGAAAAGGTGACTCGGTCATTCGGTATTTCGAGGTACG
CCCGAACCTCCTTTTGTGCACTACATAAACAC

BO10971.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9446-PA 1587 coro-RA 1..882 17..898 4385 99.8 Plus
CG9446-PB 1587 coro-RB 1..882 17..898 4385 99.8 Plus
CG9446-PC 1587 coro-RC 1..882 17..898 4385 99.8 Plus
CG9446-PA 1587 coro-RA 883..917 898..932 175 100 Plus
CG9446-PB 1587 coro-RB 883..917 898..932 175 100 Plus
CG9446-PC 1587 coro-RC 883..917 898..932 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
coro-RG 2769 CG9446-RG 101..1017 17..932 4545 99.8 Plus
coro-RF 2794 CG9446-RF 126..1042 17..932 4545 99.8 Plus
coro-RE 2696 CG9446-RE 287..1203 17..932 4545 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6864634..6865051 897..480 2090 100 Minus
2R 25286936 2R 6865106..6865374 483..215 1345 100 Minus
2R 25286936 2R 6866685..6866884 216..17 985 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 00:50:11 has no hits.

BO10971.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:44 Download gff for BO10971.5prime
Subject Subject Range Query Range Percent Splice Strand
coro-PB 1..917 17..932 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:52 Download gff for BO10971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9446-PC 1..917 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:08 Download gff for BO10971.5prime
Subject Subject Range Query Range Percent Splice Strand
coro-RE 280..1203 9..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:09 Download gff for BO10971.5prime
Subject Subject Range Query Range Percent Splice Strand
coro-RE 280..1203 9..932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:09 Download gff for BO10971.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6864534..6864571 896..932 97 <- Minus
2R 6864636..6865049 482..895 100 <- Minus
2R 6865108..6865374 215..481 100 <- Minus
2R 6866687..6866891 9..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:08 Download gff for BO10971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2752039..2752076 896..932 97 <- Minus
arm_2R 2752141..2752554 482..895 100 <- Minus
arm_2R 2752613..2752879 215..481 100 <- Minus
arm_2R 2754192..2754396 9..214 98   Minus

BO10971.complete Sequence

1618 bp (1618 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631942

> BO10971.complete
GAAGTTATCAGTCGACATGTCATTTCGCGTAGTGCGCAGTTCCAAGTTCC
GCCACGTCTACGGACAGGCTCTCAAGCGGGAGCAGTGCTACGACAACATA
CGGGTATCCAAGTCCAGCTGGGACTCCACATTCTGCGCGGTGAATCCCAA
GTTCCTGGCCATTATCGTAGAGTCGGCGGGCGGCGGAGCCTTCATCGTCC
TGCCACACAACAAAGTTGGTCGCATTGCGGCTGACCACCCTTTGGTGGGC
GGTCACAAGGGTCCTGTGCTGGACATCGCCTGGTGCCCCCACAACGACAA
CGTGATCGCCTCCGGCTCAGAGGACTGTGTGGTCAAAGTGTGGCAGATCC
CCGATGGCGGGCTGTCGCGAACACTCACCGAACCCGTGGTCGACCTGGTT
TTCCACCAGCGTCGCGTGGGTCTGGTGTTGTGGCATCCCTCTGCGCTCAA
CGTGCTGCTTACCGCCGGCTCCGATAACCAGGTCGTGATTTGGAACGTGG
GCACTGGTGAAATCCTCGTGCACATCGACTCCCATCCGGACATCGTTTAC
AGCGCCTGCTTCAACTGGGATGGCTCTAAGTTGGTTACCACCTGCAAGGA
TAAAAAGATCCGCATCTACGATCCGCGCACTGCCGAGCTGGAGAGCGAAG
CCATGTGTCATGAGGGCTCCAAGGCCACGAGGGCCATTTTCCTACGTCAC
GGTCTGATCTTCACCACAGGCTTCAACCGTAGCTCGGAGCGTCAGTACTC
CCTGCGCGCACCGGATGCCCTTAACGAACCCATTGTCATGGTGGAGCTGG
ACACGTCCAACGGCGTAATGTTCCCTCTTTACGACGCAGACACGAACATG
ATCTACTTGTGTGGAAAAGGTGACTCGGTCATTCGGTATTTCGAGGTAAC
GCCCGAACCTCCTTTTGTGCACTACATAAACACGTTTCAGACTACAGAGC
CGCAGCGTGGTATTGGTCTGATGCCCAAGCGAGGCTGTGATGTGACCACC
TGCGAGGTCGCCAAGTTCTATCGCATGAACAACAACGGTCTGTGTCAGGT
CATCTCGATGACTGTGCCGCGCAAATCGGATCTTTTCCAGGAGGATCTCT
ACCCCGATACGCTAGCGGAAGACGCTGCCATCACCGCGGAGGAGTGGATC
GATGGCAAGGATGCGGATCCGATCACATTTTCGCTCAAAGGTGGCTACGT
GTCCTCGTCGGTAAACAAATCGCTACCAGCGAAGAAGGCGGGCAACATCC
TGAACAAGCCTAGAGGCGACAGCGCTAGCTCCGGTGCAACGAGCAGCAGC
GCGGGCGGCGGCAACTTTGCGTCCGGAAATAACAATGAGGCTAGCGAAGG
TGGACCGCCTGCAGCGGTTTTATCGGAAAAGGACCTGCGCACCATACAAG
ACGAGATCCGCAAACTTAAGGCGATCATCGTCAAGCAAGAGAACCGCATC
CGCGCTCTGGAGGCCAAGGAGGACGCCCGCAACAAGAATGGAAGCGATGC
TGCGCCGGCTTCAGCGGGAGCAGCCACGTCTGACGGCAAAGCCAGTGAAA
GTGCCAACGACCACGCGTCCACATCAGCCGGAACGTCAAAGGACGAGGAC
GCAAGCTTTCTAGACCAT

BO10971.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
coro-RC 1587 CG9446-PC 1..1584 17..1600 7905 99.9 Plus
coro-RB 1587 CG9446-PB 1..1584 17..1600 7905 99.9 Plus
coro-RA 1587 CG9446-PA 1..1584 17..1600 7905 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
coro-RC 2610 CG9446-RC 222..1805 17..1600 7905 99.9 Plus
coro-RB 2790 CG9446-RB 143..1726 17..1600 7905 99.9 Plus
coro-RA 2890 CG9446-RA 243..1826 17..1600 7905 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6864634..6865051 897..480 2090 100 Minus
2R 25286936 2R 6864277..6864573 1190..894 1485 100 Minus
2R 25286936 2R 6865106..6865374 483..215 1345 100 Minus
2R 25286936 2R 6863065..6863290 1600..1375 1130 100 Minus
2R 25286936 2R 6866685..6866884 216..17 985 99.5 Minus
2R 25286936 2R 6863347..6863533 1376..1190 935 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:03:36 has no hits.

BO10971.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:30 Download gff for BO10971.complete
Subject Subject Range Query Range Percent Splice Strand
coro-RC 1..1587 17..1601 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:48 Download gff for BO10971.complete
Subject Subject Range Query Range Percent Splice Strand
coro-RC 266..1856 9..1600 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:27 Download gff for BO10971.complete
Subject Subject Range Query Range Percent Splice Strand
coro-RA 243..1826 17..1602 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:30 Download gff for BO10971.complete
Subject Subject Range Query Range Percent Splice Strand
coro-RC 266..1856 9..1600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:19 Download gff for BO10971.complete
Subject Subject Range Query Range Percent Splice Strand
coro-RA 243..1826 17..1602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:19 Download gff for BO10971.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6864278..6864571 896..1189 100 <- Minus
2R 6863063..6863289 1376..1602 99 <- Minus
2R 6863348..6863533 1190..1375 100 <- Minus
2R 6864636..6865049 482..895 100 <- Minus
2R 6865108..6865374 215..481 100 <- Minus
2R 6866687..6866884 17..214 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:27 Download gff for BO10971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2750568..2750794 1376..1602 99 <- Minus
arm_2R 2750853..2751038 1190..1375 100 <- Minus
arm_2R 2751783..2752076 896..1189 100 <- Minus
arm_2R 2752141..2752554 482..895 100 <- Minus
arm_2R 2752613..2752879 215..481 100 <- Minus
arm_2R 2754192..2754389 17..214 99   Minus

BO10971.pep Sequence

Translation from 16 to 1618

> BO10971.pep
MSFRVVRSSKFRHVYGQALKREQCYDNIRVSKSSWDSTFCAVNPKFLAII
VESAGGGAFIVLPHNKVGRIAADHPLVGGHKGPVLDIAWCPHNDNVIASG
SEDCVVKVWQIPDGGLSRTLTEPVVDLVFHQRRVGLVLWHPSALNVLLTA
GSDNQVVIWNVGTGEILVHIDSHPDIVYSACFNWDGSKLVTTCKDKKIRI
YDPRTAELESEAMCHEGSKATRAIFLRHGLIFTTGFNRSSERQYSLRAPD
ALNEPIVMVELDTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPF
VHYINTFQTTEPQRGIGLMPKRGCDVTTCEVAKFYRMNNNGLCQVISMTV
PRKSDLFQEDLYPDTLAEDAAITAEEWIDGKDADPITFSLKGGYVSSSVN
KSLPAKKAGNILNKPRGDSASSGATSSSAGGGNFASGNNNEASEGGPPAA
VLSEKDLRTIQDEIRKLKAIIVKQENRIRALEAKEDARNKNGSDAAPASA
GAATSDGKASESANDHASTSAGTSKDEDASFLDH

BO10971.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
coro-PC 528 CG9446-PC 1..528 1..528 2764 100 Plus
coro-PB 528 CG9446-PB 1..528 1..528 2764 100 Plus
coro-PA 528 CG9446-PA 1..528 1..528 2764 100 Plus
coro-PD 534 CG9446-PD 1..534 1..528 2747 98.9 Plus
coro-PG 535 CG9446-PG 1..535 1..528 2746 98.7 Plus