Clone Sequence Records
BO10971.3prime Sequence
831 bp (786 high quality bases) assembled on 2006-04-19
> BO10971.3prime
ATGGTCTAGAAAGCTTGCGTCCTCGTCCTTTGACGTTCCGGCTGATGTGG
ACGCGTGGTCGTTGGCACTTTCACTGGCTTTGCCGTCAGACGTGGCTGCT
CCCGCTGAAGCCGGCGCAGCATCGCTTCCATTCTTGTTGCGGGCGTCCTC
CTTGGCCTCCAGAGCGCGGATGCGGTTCTCTTGCTTGACGATGATCGCCT
TAAGTTTGCGGATCTCGTCTTGTATGGTGCGCAGGTCCTTTTCCGATAAA
ACCGCTGCAGGCGGTCCACCTTCGCTAGCCTCATTGTTATTTCCGGACGC
AAAGTTGCCGCCGCCCGCGCTGCTGCTCGTTGCACCGGAGCTAGCGCTGT
CGCCTCTAGGCTTGTTCAGGATGTTGCCCGCCTTCTTCGCTGGTAGCGAT
TTGTTTACCGACGAGGACACGTAGCCACCTTTGAGCGAAAATGTGATCGG
ATCCGCATCCTTGCCATCGATCCACTCCTCCGCGGTGATGGCAGCGTCTT
CCGCTAGCGTATCGGGGTAGAGATCCTCCTGGAAAAGATCCGATTTGCGC
GGCACAGTCATCGAGATGACCTGACACAGACCGTTGTTGTTCATGCGATA
GAACTTGGCGACCTCGCAGGTGGTCACATCACAGCCTCGCTTGGGCATCA
GACCAATACCACGCTGCGGCTCTGTAGTCTGAAACGTGTTTATGTAGTGC
ACAAAAGGAGGTTCGGGCGTTACCTCGAAATACCGAATGACCGAGTCACC
TTTTCCACACAAGTAGATCATGTTCGTGTCTGCGTCGTAAAGAGGGAACA
TTACGCCGTTGGACGTGTCCAGCTCCACCAT
BO10971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9446-PA | 1587 | coro-RA | 772..1584 | 831..19 | 4065 | 100 | Minus |
CG9446-PB | 1587 | coro-RB | 772..1584 | 831..19 | 4065 | 100 | Minus |
CG9446-PC | 1587 | coro-RC | 772..1584 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
coro-RD | 2649 | CG9446-RD | 1032..1844 | 831..19 | 4065 | 100 | Minus |
coro-RC | 2610 | CG9446-RC | 993..1805 | 831..19 | 4065 | 100 | Minus |
coro-RB | 2790 | CG9446-RB | 914..1726 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6864277..6864573 | 429..725 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 6863065..6863290 | 19..244 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 6863347..6863533 | 243..429 | 935 | 100 | Plus |
2R | 25286936 | 2R | 6864634..6864743 | 722..831 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:27:21 has no hits.
BO10971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:43 Download gff for
BO10971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-PB | 772..1587 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:51 Download gff for
BO10971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9446-PC | 772..1587 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:56:09 Download gff for
BO10971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RB | 914..1726 | 19..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:17 Download gff for
BO10971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RB | 914..1726 | 19..831 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:17 Download gff for
BO10971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6863065..6863289 | 19..243 | 100 | <- | Plus |
2R | 6863348..6863533 | 244..429 | 100 | <- | Plus |
2R | 6864278..6864571 | 430..723 | 100 | <- | Plus |
2R | 6864636..6864743 | 724..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:56:09 Download gff for
BO10971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2750570..2750794 | 19..243 | 100 | <- | Plus |
arm_2R | 2750853..2751038 | 244..429 | 100 | <- | Plus |
arm_2R | 2751783..2752076 | 430..723 | 100 | <- | Plus |
arm_2R | 2752141..2752248 | 724..831 | 100 | | Plus |
BO10971.5prime Sequence
932 bp (830 high quality bases) assembled on 2006-04-19
> BO10971.5prime
GAAGTTATCAGTCGACATGTCATTTCGCGTAGTGCGCAGTTCCAAGTTCC
GCCACGTCTACGGACAGGCTCTCAAGCGGGAGCAGTGCTACGACAACATA
CGGGTATCCAAGTCCAGCTGGGACTCCACATTCTGCGCGGTGAATCCCAA
GTTCCTGGCCATTATCGTAGAGTCGGCGGGCGGCGGAGCCTTCATCGTCC
TGCCACACAACAAAGTTGGTCGCATTGCGGCTGACCACCCTTTGGTGGGC
GGTCACAAGGGTCCTGTGCTGGACATCGCCTGGTGCCCCCACAACGACAA
CGTGATCGCCTCCGGCTCAGAGGACTGTGTGGTCAAAGTGTGGCAGATCC
CCGATGGCGGGCTGTCGCGAACACTCACCGAACCCGTGGTCGACCTGGTT
TTCCACCAGCGTCGCGTGGGTCTGGTGTTGTGGCATCCCTCTGCGCTCAA
CGTGCTGCTTACCGCCGGCTCCGATAACCAGGTCGTGATTTGGAACGTGG
GCACTGGTGAAATCCTCGTGCACATCGACTCCCATCCGGACATCGTTTAC
AGCGCCTGCTTCAACTGGGATGGCTCTAAGTTGGTTACCACCTGCAAGGA
TAAAAAGATCCGCATCTACGATCCGCGCACTGCCGAGCTGGAGAGCGAAG
CCATGTGTCATGAGGGCTCCAAGGCCACGAGGGCCATTTTCCTACGTCAC
GGTCTGATCTTCACCACAGGCTTCAACCGTAGCTCGGAGCGTCAGTACTC
CCTGCGCGCACCGGATGCCCTTAACGAACCCATTGTCATGGTGGAGCTGG
ACACGTCCAACGGCGTAATGTTCCCTCTTTACGACGCAGACACGAACATG
ATCTACTTGTGTGGAAAAGGTGACTCGGTCATTCGGTATTTCGAGGTACG
CCCGAACCTCCTTTTGTGCACTACATAAACAC
BO10971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9446-PA | 1587 | coro-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
CG9446-PB | 1587 | coro-RB | 1..882 | 17..898 | 4385 | 99.8 | Plus |
CG9446-PC | 1587 | coro-RC | 1..882 | 17..898 | 4385 | 99.8 | Plus |
CG9446-PA | 1587 | coro-RA | 883..917 | 898..932 | 175 | 100 | Plus |
CG9446-PB | 1587 | coro-RB | 883..917 | 898..932 | 175 | 100 | Plus |
CG9446-PC | 1587 | coro-RC | 883..917 | 898..932 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
coro-RG | 2769 | CG9446-RG | 101..1017 | 17..932 | 4545 | 99.8 | Plus |
coro-RF | 2794 | CG9446-RF | 126..1042 | 17..932 | 4545 | 99.8 | Plus |
coro-RE | 2696 | CG9446-RE | 287..1203 | 17..932 | 4545 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6864634..6865051 | 897..480 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 6865106..6865374 | 483..215 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 6866685..6866884 | 216..17 | 985 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:50:11 has no hits.
BO10971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:44 Download gff for
BO10971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-PB | 1..917 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:52 Download gff for
BO10971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9446-PC | 1..917 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:08 Download gff for
BO10971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RE | 280..1203 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:09 Download gff for
BO10971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RE | 280..1203 | 9..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:09 Download gff for
BO10971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6864534..6864571 | 896..932 | 97 | <- | Minus |
2R | 6864636..6865049 | 482..895 | 100 | <- | Minus |
2R | 6865108..6865374 | 215..481 | 100 | <- | Minus |
2R | 6866687..6866891 | 9..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:08 Download gff for
BO10971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2752039..2752076 | 896..932 | 97 | <- | Minus |
arm_2R | 2752141..2752554 | 482..895 | 100 | <- | Minus |
arm_2R | 2752613..2752879 | 215..481 | 100 | <- | Minus |
arm_2R | 2754192..2754396 | 9..214 | 98 | | Minus |
BO10971.complete Sequence
1618 bp (1618 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631942
> BO10971.complete
GAAGTTATCAGTCGACATGTCATTTCGCGTAGTGCGCAGTTCCAAGTTCC
GCCACGTCTACGGACAGGCTCTCAAGCGGGAGCAGTGCTACGACAACATA
CGGGTATCCAAGTCCAGCTGGGACTCCACATTCTGCGCGGTGAATCCCAA
GTTCCTGGCCATTATCGTAGAGTCGGCGGGCGGCGGAGCCTTCATCGTCC
TGCCACACAACAAAGTTGGTCGCATTGCGGCTGACCACCCTTTGGTGGGC
GGTCACAAGGGTCCTGTGCTGGACATCGCCTGGTGCCCCCACAACGACAA
CGTGATCGCCTCCGGCTCAGAGGACTGTGTGGTCAAAGTGTGGCAGATCC
CCGATGGCGGGCTGTCGCGAACACTCACCGAACCCGTGGTCGACCTGGTT
TTCCACCAGCGTCGCGTGGGTCTGGTGTTGTGGCATCCCTCTGCGCTCAA
CGTGCTGCTTACCGCCGGCTCCGATAACCAGGTCGTGATTTGGAACGTGG
GCACTGGTGAAATCCTCGTGCACATCGACTCCCATCCGGACATCGTTTAC
AGCGCCTGCTTCAACTGGGATGGCTCTAAGTTGGTTACCACCTGCAAGGA
TAAAAAGATCCGCATCTACGATCCGCGCACTGCCGAGCTGGAGAGCGAAG
CCATGTGTCATGAGGGCTCCAAGGCCACGAGGGCCATTTTCCTACGTCAC
GGTCTGATCTTCACCACAGGCTTCAACCGTAGCTCGGAGCGTCAGTACTC
CCTGCGCGCACCGGATGCCCTTAACGAACCCATTGTCATGGTGGAGCTGG
ACACGTCCAACGGCGTAATGTTCCCTCTTTACGACGCAGACACGAACATG
ATCTACTTGTGTGGAAAAGGTGACTCGGTCATTCGGTATTTCGAGGTAAC
GCCCGAACCTCCTTTTGTGCACTACATAAACACGTTTCAGACTACAGAGC
CGCAGCGTGGTATTGGTCTGATGCCCAAGCGAGGCTGTGATGTGACCACC
TGCGAGGTCGCCAAGTTCTATCGCATGAACAACAACGGTCTGTGTCAGGT
CATCTCGATGACTGTGCCGCGCAAATCGGATCTTTTCCAGGAGGATCTCT
ACCCCGATACGCTAGCGGAAGACGCTGCCATCACCGCGGAGGAGTGGATC
GATGGCAAGGATGCGGATCCGATCACATTTTCGCTCAAAGGTGGCTACGT
GTCCTCGTCGGTAAACAAATCGCTACCAGCGAAGAAGGCGGGCAACATCC
TGAACAAGCCTAGAGGCGACAGCGCTAGCTCCGGTGCAACGAGCAGCAGC
GCGGGCGGCGGCAACTTTGCGTCCGGAAATAACAATGAGGCTAGCGAAGG
TGGACCGCCTGCAGCGGTTTTATCGGAAAAGGACCTGCGCACCATACAAG
ACGAGATCCGCAAACTTAAGGCGATCATCGTCAAGCAAGAGAACCGCATC
CGCGCTCTGGAGGCCAAGGAGGACGCCCGCAACAAGAATGGAAGCGATGC
TGCGCCGGCTTCAGCGGGAGCAGCCACGTCTGACGGCAAAGCCAGTGAAA
GTGCCAACGACCACGCGTCCACATCAGCCGGAACGTCAAAGGACGAGGAC
GCAAGCTTTCTAGACCAT
BO10971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
coro-RC | 1587 | CG9446-PC | 1..1584 | 17..1600 | 7905 | 99.9 | Plus |
coro-RB | 1587 | CG9446-PB | 1..1584 | 17..1600 | 7905 | 99.9 | Plus |
coro-RA | 1587 | CG9446-PA | 1..1584 | 17..1600 | 7905 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
coro-RC | 2610 | CG9446-RC | 222..1805 | 17..1600 | 7905 | 99.9 | Plus |
coro-RB | 2790 | CG9446-RB | 143..1726 | 17..1600 | 7905 | 99.9 | Plus |
coro-RA | 2890 | CG9446-RA | 243..1826 | 17..1600 | 7905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6864634..6865051 | 897..480 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 6864277..6864573 | 1190..894 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 6865106..6865374 | 483..215 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 6863065..6863290 | 1600..1375 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 6866685..6866884 | 216..17 | 985 | 99.5 | Minus |
2R | 25286936 | 2R | 6863347..6863533 | 1376..1190 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:03:36 has no hits.
BO10971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:30 Download gff for
BO10971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RC | 1..1587 | 17..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:48 Download gff for
BO10971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RC | 266..1856 | 9..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:27 Download gff for
BO10971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RA | 243..1826 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:30 Download gff for
BO10971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RC | 266..1856 | 9..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:19 Download gff for
BO10971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
coro-RA | 243..1826 | 17..1602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:19 Download gff for
BO10971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6864278..6864571 | 896..1189 | 100 | <- | Minus |
2R | 6863063..6863289 | 1376..1602 | 99 | <- | Minus |
2R | 6863348..6863533 | 1190..1375 | 100 | <- | Minus |
2R | 6864636..6865049 | 482..895 | 100 | <- | Minus |
2R | 6865108..6865374 | 215..481 | 100 | <- | Minus |
2R | 6866687..6866884 | 17..214 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:27 Download gff for
BO10971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2750568..2750794 | 1376..1602 | 99 | <- | Minus |
arm_2R | 2750853..2751038 | 1190..1375 | 100 | <- | Minus |
arm_2R | 2751783..2752076 | 896..1189 | 100 | <- | Minus |
arm_2R | 2752141..2752554 | 482..895 | 100 | <- | Minus |
arm_2R | 2752613..2752879 | 215..481 | 100 | <- | Minus |
arm_2R | 2754192..2754389 | 17..214 | 99 | | Minus |
BO10971.pep Sequence
Translation from 16 to 1618
> BO10971.pep
MSFRVVRSSKFRHVYGQALKREQCYDNIRVSKSSWDSTFCAVNPKFLAII
VESAGGGAFIVLPHNKVGRIAADHPLVGGHKGPVLDIAWCPHNDNVIASG
SEDCVVKVWQIPDGGLSRTLTEPVVDLVFHQRRVGLVLWHPSALNVLLTA
GSDNQVVIWNVGTGEILVHIDSHPDIVYSACFNWDGSKLVTTCKDKKIRI
YDPRTAELESEAMCHEGSKATRAIFLRHGLIFTTGFNRSSERQYSLRAPD
ALNEPIVMVELDTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPF
VHYINTFQTTEPQRGIGLMPKRGCDVTTCEVAKFYRMNNNGLCQVISMTV
PRKSDLFQEDLYPDTLAEDAAITAEEWIDGKDADPITFSLKGGYVSSSVN
KSLPAKKAGNILNKPRGDSASSGATSSSAGGGNFASGNNNEASEGGPPAA
VLSEKDLRTIQDEIRKLKAIIVKQENRIRALEAKEDARNKNGSDAAPASA
GAATSDGKASESANDHASTSAGTSKDEDASFLDH
BO10971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
coro-PC | 528 | CG9446-PC | 1..528 | 1..528 | 2764 | 100 | Plus |
coro-PB | 528 | CG9446-PB | 1..528 | 1..528 | 2764 | 100 | Plus |
coro-PA | 528 | CG9446-PA | 1..528 | 1..528 | 2764 | 100 | Plus |
coro-PD | 534 | CG9446-PD | 1..534 | 1..528 | 2747 | 98.9 | Plus |
coro-PG | 535 | CG9446-PG | 1..535 | 1..528 | 2746 | 98.7 | Plus |