Clone BO10972 Report

Search the DGRC for BO10972

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG7728-RA
Protein status:BO10972.pep: validated full length
Sequenced Size:3511

Clone Sequence Records

BO10972.3prime Sequence

932 bp (868 high quality bases) assembled on 2006-04-19

> BO10972.3prime
ATGGTCTAGAAAGCTTGCGGCAGTCTGCTTTCCTCGCAGCTTGCTGATGG
CCCGCGATACCTTCTTGCGCAGCTCCTTTTGACGCCGCTCCTGGGAAGCC
ATCTTCTCCCGCTTCTTTTCGCGGTAGTTTTTGATGCGCTTCTTCATTTC
CATGCGTTCACGTTGCCGCTTGTCCTTAAAGTTGGTCTCAATCATCTTCA
TCATCTTGGACACCTTCTGCTCGTACGGTGAGTTAACCACGGCCACGCGC
TCCAGCGCCGCCTTGGGATTCTCCGGTCCCAGCTTGGGCTTGTCCTTGTA
CGGCAGCGCCCGCTGAAGGGCCTTGGGTATGGTAAGTGGGCGGAAAATTT
TCTCCTTGCGCACGATCGTTGTGTACATACTGTCGGGCTGGGCTGCATTT
TGCACAGCCCTCTCCCGCTTGAGTTGACCGAGCGTCTTCATGCCCTGCCA
TTGGCTCTTCTGGTCCAGCGGCAGCAGGAGTGAGGACACAGGAGCATAGA
ACCGAGGCACTTCCACACGGAACCAGGTGCGGCAGAAGACTATGTCGCTC
AGAAGGATCTTGTCCTCAAATGTGGCACGATAAGAACCTTCGGGTGTGTG
GTGAGCCTTCTTGATCTGTCCACGAATTCCAGACACCGTTTTGATTTTGG
CTCCTTCGAACTTTGCAACTTCCAGTGAGGAGTTGAACATGTCCTTCACA
AAGGCCGTCTTCTTGTAGATCTTAAACGGATGTCCCACCAGCTTGAGCTT
CTTCATGATCTGCGAAGATTTGTCCACCTCGGTGACACAGCCTGTGGCTG
CTATCCGGAAAGCCAGCCGACGCATCTCCTCCTGATCCTGACGCACAGTC
TGCAAGGCTAGGAAACCAGTATTTTGAGGCGTTATCGGGCCCCAGAAGGT
CATGCTGCAGGTGACATGATTGGGCGTATACT

BO10972.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7728-PA 3480 CG7728-RA 2686..3477 810..19 3960 100 Minus
CG7728-PA 3480 CG7728-RA 2564..2681 932..815 590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7728-RA 3675 CG7728-RA 2667..3580 932..19 4525 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17019262..17020175 932..19 4525 99.7 Minus
Blast to na_te.dros performed 2015-02-11 11:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Q-element 759 Q-element Q 759bp 496..624 94..220 117 58.8 Plus
Cr1a 4470 Cr1a DMCR1A 4470bp 3383..3511 94..220 117 58.8 Plus

BO10972.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:45 Download gff for BO10972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7728-PA 2564..3480 16..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:54 Download gff for BO10972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7728-PA 2564..3480 16..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:56:10 Download gff for BO10972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 2667..3580 19..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:20 Download gff for BO10972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 2667..3580 19..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:20 Download gff for BO10972.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17019262..17020175 19..932 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:56:10 Download gff for BO10972.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17012362..17013275 19..932 99   Minus

BO10972.5prime Sequence

889 bp (888 high quality bases) assembled on 2006-04-19

> BO10972.5prime
GAAGTTATCAGTCGACATGGCCGACGATGCCGGCCAGGACAAGCGAAAGC
AGCACCGCGCCCGCCAGTCCGGCGTGAAGGCGGACAAGAAAAAGCTGAAG
GCCAAGAAGGACTCCAACCAGAAGGAGCCCGAGTTGACCGCCAGGCAGAG
GAATCCCAAGGCGTTCGCCATCAACTCGGCGCAGCGAGCAGAGAGGAACT
TCCGGCGCAAGGAGGACCTTACGGCCAAGAAGCAGCATATTCCGGTTGTC
GATCAAACTCCGAACGTACCGCCACCCGTACTGATTGCCGTGGTGGGACC
ACCCAAAGTGGGAAAGACAACGCTGATCAAGGACCTAATTAAAAGCTTTA
CGCGGACGAATGTCACCGATATAAAGGGTCCCATTACTATTGTGACCTCC
AAGAAGCGCCGGATTACCCTGCTGGAGTGCAACAACGATGTGAACTCCAT
GATCGATGTGGCCAAATGCGCCGATCTGGTGCTGCTGCTCTGCGACGCAA
GCTACGGCTTCGAAATGGAGATCTTTGAGTTCCTGAACATCTGCCAGGTG
CACGGCATGCCCAAGATAATGGGCGTACTTACCCACCTGGACATGATCAA
GAACCCCAAGCAGCTGAGGAAACGAAAGAAGGAACTGAAGCACCGCTTTT
GGACGGAAGTCTACGATGGCGCCAAGCTATTCTACCTTTCTGGACTTCTT
CACGGCGAGTACCTCCGGAACGAAGTCAAAAACCTGGGACGATTTATCTC
TGTGATGAAGTTTCGCCCGCTGCAGTGGCGAGGTGCACATAGTTATCTGC
TGGTAGACCGCATCGAGGATGTGACAAACACAGATCGCGTGCGCCGAGAT
CCTAAGTGCGATCGCGAGGTAGTACTCTATGGCTATGTC

BO10972.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7728-PA 3480 CG7728-RA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7728-RA 3675 CG7728-RA 104..976 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17016639..17017511 17..889 4365 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:48:00 has no hits.

BO10972.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:46 Download gff for BO10972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7728-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:55 Download gff for BO10972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7728-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:56:56 Download gff for BO10972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 104..976 17..889 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:28 Download gff for BO10972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 104..976 17..889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:28 Download gff for BO10972.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17016639..17017511 17..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:56:56 Download gff for BO10972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17009739..17010611 17..889 100   Plus

BO10972.complete Sequence

3511 bp (3511 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631943

> BO10972.complete
GAAGTTATCAGTCGACATGGCCGACGATGCCGGCCAGGACAAGCGAAAGC
AGCACCGCGCCCGCCAGTCCGGCGTGAAGGCGGACAAGAAAAAGCTGAAG
GCCAAGAAGGACTCCAACCAGAAGGAGCCCGAGTTGACCGCCAGGCAGAG
GAATCCCAAGGCGTTCGCCATCAACTCGGCGCAGCGAGCAGAGAGGAACT
TCCGGCGCAAGGAGGACCTTACGGCCAAGAAGCAGCATATTCCGGTTGTC
GATCAAACTCCGAACGTACCGCCACCCGTACTGATTGCCGTGGTGGGACC
ACCCAAAGTGGGAAAGACAACGCTGATCAAGGACCTAATTAAAAGCTTTA
CGCGGACGAATGTCACCGATATAAAGGGTCCCATTACTATTGTGACCTCC
AAGAAGCGCCGGATTACCCTGCTGGAGTGCAACAACGATGTGAACTCCAT
GATCGATGTGGCCAAATGCGCCGATCTGGTGCTGCTGCTCTGCGACGCAA
GCTACGGCTTCGAAATGGAGATCTTTGAGTTCCTGAACATCTGCCAGGTG
CACGGCATGCCCAAGATAATGGGCGTACTTACCCACCTGGACATGATCAA
GAACCCCAAGCAGCTGAGGAAACGAAAGAAGGAACTGAAGCACCGCTTTT
GGACGGAAGTCTACGATGGCGCCAAGCTATTCTACCTTTCTGGACTTCTT
CACGGCGAGTACCTCCGGAACGAAGTCAAAAACCTGGGACGATTTATCTC
TGTGATGAAGTTTCGCCCGCTGCAGTGGCGAGGTGCACATAGTTATCTGC
TGGTAGACCGCATCGAGGATGTGACAAACACAGATCGCGTGCGCCGAGAT
CCTAAGTGCGATCGCGAGGTAGTACTCTATGGCTATGTCCGAGGAGTTCC
TCTCAAGCAAGAACACATGGTGCACATAGCTGGCCTGGGGGATGCCCGCA
TCGACGAGTTAAACGTCATTCCCGATCCTTGCCCCCTGCCTGGGACGGAA
AAGAAGCGAAGTTTGCTGGAGAAAGAGCGATTACTGTATGCACCCATGTC
CGGAGTCGGTGGCATTGTTTACGACAAGGATGCTGTCTACATTGAGCTAC
AGGGATCGCACTCGCACAAGGAACAGGAGCAGACCGCTGAGGCTGCCGAG
CAGGCGGAGCTGGTGAACAAGCTGATCGATAAGAAGGCCACCATTGATGA
ACAGATGGAACAGCAGGAGTTCCGTCTATTCTCAGATGCCAAGCCCATCA
AGTCCAAGGACTTCCGCAATGATCAAGACGACGAAGAGGAGGATGAAGAG
GCGGAAAGTAGTGAGAATGAGGATGACGATGGAGAGGACTCTGGTCTGGA
TGCCGCTGACAGTGAGGAGGAGCAGCAGGATGAGTTCGATGCGGACGATT
GGCGTGGGGAGAACAGTGAGGAGGAGGAGGATGCTGAGGAAGACGCTTCT
TCTGGCGATGAGGAATATCAAAGCCTGGGAAATGTGAAAACATCCAACGA
ATCCGATTCGGACGATGAGGAGGCTCGCGTCCTGGCCAGCAACATGAGCT
GGAAAACTAATCTGGCCCAGAAGGCCCGCGATGCTTTTCTCCAACGTCAC
TCGGAGTCGAAAAACCTGATGCGCCTTGTCTACGGTGTGTATAATCAGAG
TGAACATAGTCGTCAGGAGGCAGAAGCAGAAGACGACTCAGAAGAAGAAC
TAGGTGGTCTGTTCCGGGTGGCTGCTAAAAAACAAAGCCTGAAGCAATCA
GACCAGGACATTAGGGATAAAGACGAGCGGTGTTTCTTCGAGTATCAGGG
TGATGCCACTCGGGATTGGCTGGCGGAAGACAACAAGGAACTTATCAAGA
ACTGCTTCGTTACCGGCAAATGGAAGGCCAGCGAGGATGCTGAAAATCTA
CTAAAGATGGACGACATGAGTGACGCAGAAAGCGAAGTGTACGGAGACTT
TGAGGATTTAGAGACGGGCGAGCAGCACAGCGGTAAACCCAAAGCAGAAG
ATGGTGGAGAATCGGAAGAAGAGAATTCCAAGCCTGAGGATTCTTCAGCA
CCCAAGCGCAAACTGACCCGCGTAGAGGAGGAAAATCTCACCAAGGCCGA
GCTGATGGCAAAAAAATTGAAGTTAAAGGCCAAGTTCGATGCGGAGTACG
ACAACAGCGGCGAGGGAAAGGGCGAGGAGGATAATGGTCGGATAACTGGC
GATCACTCCTTCTACGAGGACCTTAAAGCAGAGGCTCAGCGGCAGAGCGA
GCTAAACAAGAGCGAGTTTGCCCACCTGGACAATGAGTTCCGCATTCAGA
TCGAGGGCTATCGACCGGGTCTTTACGTTCGCCTCGGATTCAAGCAGCTG
CCCGCCGAGTTCATCGAGAATTTCGATGCCAGCTATCCGGTACTGGTTGG
TGCCTTAAATATGACCGAGGAGAACGTTGGCTATGTCAACTGCAAGGTGA
AGAAGCATCGCTGGTACAAGAAGATCCTGAAAACAGGTGATCCTTTGATC
ATCTCAATGGGTTGGCGCCGTTTTCAAACAGTGGCCATCTATGCCAAGGT
GGAAGACAACTTCCGACAACGCTACCTTAAGTATACGCCCAATCATGTCA
CCTGCAGCATGACCTTCTGGGGCCCGATAACGCCTCAAAATACTGGTTTC
CTAGCCTTGCAGACTGTGCGTCAGGATCAGGAGGAGATGCGTCGGCTTGG
CTTCCGGATAGCAGCCACAGGCTGTGTCACCGAGGTGGACAAATCTTCGC
AGATCATGAAGAAGCTCAAGCTGGTGGGACATCCGTTTAAGATCTACAAG
AAGACGGCCTTTGTGAAGGACATGTTCAACTCCTCACTGGAAGTTGCAAA
GTTCGAAGGAGCCAAAATCAAAACGGTGTCTGGAATTCGTGGACAGATCA
AGAAGGCTCACCACACACCCGAAGGTTCTTATCGTGCCACATTTGAGGAC
AAGATCCTTCTGAGCGACATAGTCTTCTGCCGCACCTGGTTCCGTGTGGA
AGTGCCTCGGTTCTATGCTCCTGTGTCCTCACTCCTGCTGCCGCTGGACC
AGAAGAGCCAATGGCAGGGCATGAAGACGCTCGGTCAACTCAAGCGGGAG
AGGGCTGTGCAAAATGCAGCCCAGCCCGACAGTATGTACACAACGATCGT
GCGCAAGGAGAAAATTTTCCGCCCACTTACCATACCCAAGGCCCTTCAGC
GGGCGCTGCCGTACAAGGACAAGCCCAAGCTGGGACCGGAGAATCCCAAG
GCGGCGCTGGAGCGCGTGGCCGTGGTTAACTCACCGTACGAGCAGAAGGT
GTCCAAGATGATGAAGATGATTGAGACCAACTTTAAGGACAAGCGGCAAC
GTGAACGCATGGAAATGAAGAAGCGCATCAAAAACTACCGCGAAAAGAAG
CGGGAGAAGATGGCTTCCCAGGAGCGGCGTCAAAAGGAGCTGCGCAAGAA
GGTATCGCGGGCCATCAGCAAGCTGCGAGGAAAGCAGACTGCCGCAAGCT
TTCTAGACCAT

BO10972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7728-RA 3480 CG7728-PA 1..3477 17..3493 17385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7728-RA 3675 CG7728-RA 104..3580 17..3493 17385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17016639..17018424 17..1802 8930 100 Plus
3L 28110227 3L 17018484..17020175 1802..3493 8460 100 Plus
Blast to na_te.dros performed 2014-11-27 20:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Q-element 759 Q-element Q 759bp 496..624 3418..3292 117 58.8 Minus

BO10972.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:51 Download gff for BO10972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 1..3480 17..3496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:47 Download gff for BO10972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 86..3562 17..3493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:45 Download gff for BO10972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 104..3580 17..3495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:52 Download gff for BO10972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 86..3562 17..3493 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:31 Download gff for BO10972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7728-RA 104..3580 17..3495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:31 Download gff for BO10972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17016639..17018424 17..1802 100 -> Plus
3L 17018485..17020175 1803..3495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:45 Download gff for BO10972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17009739..17011524 17..1802 100 -> Plus
arm_3L 17011585..17013275 1803..3495 99   Plus

BO10972.pep Sequence

Translation from 16 to 3511

> BO10972.pep
MADDAGQDKRKQHRARQSGVKADKKKLKAKKDSNQKEPELTARQRNPKAF
AINSAQRAERNFRRKEDLTAKKQHIPVVDQTPNVPPPVLIAVVGPPKVGK
TTLIKDLIKSFTRTNVTDIKGPITIVTSKKRRITLLECNNDVNSMIDVAK
CADLVLLLCDASYGFEMEIFEFLNICQVHGMPKIMGVLTHLDMIKNPKQL
RKRKKELKHRFWTEVYDGAKLFYLSGLLHGEYLRNEVKNLGRFISVMKFR
PLQWRGAHSYLLVDRIEDVTNTDRVRRDPKCDREVVLYGYVRGVPLKQEH
MVHIAGLGDARIDELNVIPDPCPLPGTEKKRSLLEKERLLYAPMSGVGGI
VYDKDAVYIELQGSHSHKEQEQTAEAAEQAELVNKLIDKKATIDEQMEQQ
EFRLFSDAKPIKSKDFRNDQDDEEEDEEAESSENEDDDGEDSGLDAADSE
EEQQDEFDADDWRGENSEEEEDAEEDASSGDEEYQSLGNVKTSNESDSDD
EEARVLASNMSWKTNLAQKARDAFLQRHSESKNLMRLVYGVYNQSEHSRQ
EAEAEDDSEEELGGLFRVAAKKQSLKQSDQDIRDKDERCFFEYQGDATRD
WLAEDNKELIKNCFVTGKWKASEDAENLLKMDDMSDAESEVYGDFEDLET
GEQHSGKPKAEDGGESEEENSKPEDSSAPKRKLTRVEEENLTKAELMAKK
LKLKAKFDAEYDNSGEGKGEEDNGRITGDHSFYEDLKAEAQRQSELNKSE
FAHLDNEFRIQIEGYRPGLYVRLGFKQLPAEFIENFDASYPVLVGALNMT
EENVGYVNCKVKKHRWYKKILKTGDPLIISMGWRRFQTVAIYAKVEDNFR
QRYLKYTPNHVTCSMTFWGPITPQNTGFLALQTVRQDQEEMRRLGFRIAA
TGCVTEVDKSSQIMKKLKLVGHPFKIYKKTAFVKDMFNSSLEVAKFEGAK
IKTVSGIRGQIKKAHHTPEGSYRATFEDKILLSDIVFCRTWFRVEVPRFY
APVSSLLLPLDQKSQWQGMKTLGQLKRERAVQNAAQPDSMYTTIVRKEKI
FRPLTIPKALQRALPYKDKPKLGPENPKAALERVAVVNSPYEQKVSKMMK
MIETNFKDKRQRERMEMKKRIKNYREKKREKMASQERRQKELRKKVSRAI
SKLRGKQTAASFLDH

BO10972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7728-PA 1159 CG7728-PA 1..1159 1..1159 6006 100 Plus
l(2)01289-PG 1191 CG9432-PG 746..985 414..684 186 21.7 Plus
l(2)01289-PM 1193 CG9432-PM 746..985 414..684 186 21.7 Plus
CG7338-PA 814 CG7338-PA 551..779 761..994 178 25.7 Plus