Clone Sequence Records
BO10974.3prime Sequence
922 bp (756 high quality bases) assembled on 2006-04-19
> BO10974.3prime
ATGGTCTAGAAAGCTTGCTATTGAGTTGAAGTTAATACTCTGTAGATTCA
TGGCGGTGGTCGGATTAACGTTGATGGTGCCGGTGCCTGCGCCCGTTCCC
GCACCTGCTCCGCCGCCGGTGGCTTCGATGTAACGCTGCCGCGTCATCGA
GTGCACATTGCCGGGCGAATCCATGTATCGAGGATCGAACAGGCTCATCA
CCCCGATCGCTGGGTGCGAGTTTCCTCCGGCCGGCAAACTTCCAGCTCCG
CTTCCCAGGCCAGTGTGGTGCGATGTGCACATGAGCGAAGGTGTCGGAGT
CTCCGCCTGTGGTGGTATCTGCATGCCGAGCGTTTCGTTGGTGTTGTCAT
CGCCCTGATTCGTCGATGGCGTCGGCGAGGGCGACAGATTCGGCTCCTGT
TTGACCACACGCGCTTTTATGCTGGGACGTGACACCGGATAGCCACGCTT
TTTGTATTCCAGCCAGAGTGTCCTGTTGTTCACTCCGTAAAGTCGTGCCG
CCTTGCAGAATCCGATACCTCCCGTGCGTACCGCCTCCAGGGCTCGGATA
AAGTTTTCGTCTCCCTGCGGATTCACCGATCTCTTGCGCTTCACCACCTG
GTTGGCCGCTCCAGGGGCTCCACCGTTTCCAGCACTGGCATTGCCCGCTG
CTCCGCCAGCCGCACTTGCTCCACCGACTCCTGCGTGCACGGGGGATTGG
GTGGGCGTCGGACCCTGACTGTAGACCGATTGCACCATGTTTGATTCATT
GGGCGAGGTGGGCGAAAGGTTCTGGGCCGCCGTCGCATAGCTTCCGACTA
GGTTGTTCACGGTAATGATCTGCGACGAGTAGGCCTGTCCGGAGGCAGAG
GCCTGCTCCTGCTGTTGCTGCTGCTGGTAGTGCAGCTGCTGCAGATGCTG
CTGCTGTTGCGTGGCCTGCTGC
BO10974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11494-PA | 2232 | BtbVII-RA | 1326..2229 | 922..19 | 4520 | 100 | Minus |
| CG11494-PB | 2232 | BtbVII-RB | 1326..2229 | 922..19 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BtbVII-RI | 4042 | CG43365-RI | 1735..2638 | 922..19 | 4520 | 100 | Minus |
| BtbVII-RH | 3336 | CG43365-RH | 1738..2641 | 922..19 | 4520 | 100 | Minus |
| BtbVII-RG | 3321 | CG43365-RG | 1723..2626 | 922..19 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3152627..3153530 | 922..19 | 4520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:33:57 has no hits.
BO10974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:50 Download gff for
BO10974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11494-PB | 1326..2232 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:13:59 Download gff for
BO10974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11494-PB | 1326..2232 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:33:17 Download gff for
BO10974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RG | 1723..2626 | 19..922 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:33:10 Download gff for
BO10974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RG | 1723..2626 | 19..922 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:33:10 Download gff for
BO10974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3152627..3153530 | 19..922 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:33:17 Download gff for
BO10974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3152627..3153530 | 19..922 | 100 | | Minus |
BO10974.5prime Sequence
874 bp (841 high quality bases) assembled on 2006-04-19
> BO10974.5prime
GAAGTTATCAGTCGACATGTCCGTGCAGCAGTTCTGCCTGCGGTGGAACA
ACCACCAGCCGAACTTCATCTCCGTGTGCTCCTCGCTGCTGCACAATGGC
ACCCTGGTGGACGTCACCCTGGCAGCCGAGGGTCGCCAACTACAGGCCCA
CAAAATAGTGCTATCCGCCTGCAGCTCGTACTTTCAGGCTTTGTTCACCA
CAAATCCGTGCCAACATCCCATTGTCATCCTGAAGGACGTGCAGTACGAT
GACCTAAAGACCATGGTGGACTTTATGTACTACGGCGAGGTAAATGTGTC
GCAGGAGCAGCTGCCGCACATCCTCAAGACCGCCGAGATGCTCAAGATCA
AAGGCCTAGCGGAGATGCCAACGGATCCGGCCAATCTTACCAAGTCGGAT
AGCAAGTCCTCCACCGACGGCACCGAGATGGTGGGCGGTGCGGGAGTGGG
CACTGGAGCGGGCAACTCGGCTGGCAGCCTGGGAGCCGGCAGTGGAAGCA
GCGTCGGCGACTCCCTGTGGAGCAGCAGCGAGGCCCAACAGTTCCAGCAG
CAGCAGCAACAGCAGGCCCAGCAACAGGCACAGCAGCAGCACCATCACCA
CCAGCAGCAGCAGCAGTTGCAGCAGCAACAACAACAGGCGCAGCAGCAGC
AACAACAGCAGCAGCACCATCACCACCACCATCAGCAGCAGCAGAGCGGA
CAGGCGCAGGCGGCGCAGACGCATCACCACCAGATGCGACGTACGCCGTC
GCCTTTGAGCGCTGGAACCTCGCCGGCCACCAGGCGCAAGCGCTTGCGCA
AATCCTCGAATAACGGTTCTGGCGATCGCAACAACGCGGAGGAGCAGCAC
AACAGCTCACTGGACGCGGGCAGT
BO10974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11494-PA | 2232 | BtbVII-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
| CG11494-PB | 2232 | BtbVII-RB | 1..858 | 17..874 | 4290 | 100 | Plus |
| CG1856-PF | 1932 | ttk-RF | 22..48 | 32..58 | 135 | 100 | Plus |
| CG1856-PC | 1932 | ttk-RC | 22..48 | 32..58 | 135 | 100 | Plus |
| CG1856-PD | 1932 | ttk-RD | 22..48 | 32..58 | 135 | 100 | Plus |
| CG1856-PE | 2442 | ttk-RE | 22..48 | 32..58 | 135 | 100 | Plus |
| CG1856-PB | 2442 | ttk-RB | 22..48 | 32..58 | 135 | 100 | Plus |
| CG1856-PA | 2442 | ttk-RA | 22..48 | 32..58 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BtbVII-RI | 4042 | CG43365-RI | 397..1255 | 16..874 | 4295 | 100 | Plus |
| BtbVII-RG | 3321 | CG43365-RG | 397..1255 | 16..874 | 4295 | 100 | Plus |
| BtbVII-RF | 3943 | CG43365-RF | 397..1255 | 16..874 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3150212..3150844 | 185..817 | 3165 | 100 | Plus |
| 3L | 28110227 | 3L | 3149982..3150154 | 16..188 | 865 | 100 | Plus |
| 3L | 28110227 | 3L | 3150927..3150986 | 815..874 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:36:00 has no hits.
BO10974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:51 Download gff for
BO10974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11494-PB | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:01 Download gff for
BO10974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11494-PB | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:47:41 Download gff for
BO10974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RF | 390..1255 | 8..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:10 Download gff for
BO10974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RF | 390..1255 | 8..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:10 Download gff for
BO10974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3149975..3150153 | 8..187 | 97 | -> | Plus |
| 3L | 3150215..3150842 | 188..815 | 100 | -> | Plus |
| 3L | 3150928..3150986 | 816..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:47:41 Download gff for
BO10974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3149975..3150153 | 8..187 | 97 | -> | Plus |
| arm_3L | 3150215..3150842 | 188..815 | 100 | -> | Plus |
| arm_3L | 3150928..3150986 | 816..874 | 100 | | Plus |
BO10974.complete Sequence
2263 bp (2263 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631944
> BO10974.complete
GAAGTTATCAGTCGACATGTCCGTGCAGCAGTTCTGCCTGCGGTGGAACA
ACCACCAGCCGAACTTCATCTCCGTGTGCTCCTCGCTGCTGCACAATGGC
ACCCTGGTGGACGTCACCCTGGCAGCCGAGGGTCGCCAACTACAGGCCCA
CAAAATAGTGCTATCCGCCTGCAGCTCGTACTTTCAGGCTTTGTTCACCA
CAAATCCGTGCCAACATCCCATTGTCATCCTGAAGGACGTGCAGTACGAT
GACCTAAAGACCATGGTGGACTTTATGTACTACGGCGAGGTAAATGTGTC
GCAGGAGCAGCTGCCGCACATCCTCAAGACCGCCGAGATGCTCAAGATCA
AAGGCCTAGCGGAGATGCCAACGGATCCGGCCAATCTTACCAAGTCGGAT
AGCAAGTCCTCCACCGACGGCACCGAGATGGTGGGCGGTGCGGGAGTGGG
CACTGGAGCGGGCAACTCGGCTGGCAGCCTGGGAGCCGGCAGTGGAAGCA
GCGTCGGCGACTCCCTGTGGAGCAGCAGCGAGGCCCAACAGTTCCAGCAG
CAGCAGCAACAGCAGGCCCAGCAACAGGCACAGCAGCAGCACCATCACCA
CCAGCAGCAGCAGCAGTTGCAGCAGCAACAACAACAGGCGCAGCAGCAGC
AACAACAGCAGCAGCACCATCACCACCACCATCAGCAGCAGCAGAGCGGA
CAGGCGCAGGCGGCGCAGACGCATCACCACCAGATGCGACGTACGCCGTC
GCCTTTGAGCGCTGGAACCTCGCCGGCCACCAGGCGCAAGCGCTTGCGCA
AATCCTCGAATAACGGTTCTGGCGATCGCAACAACGCGGAGGAGCAGCAC
AACAGCTCACTGGACGCGGGCAGTGGTGCCGGCAACGCCGGTCTCAGTCT
CGCCCAGATGAACCAGATGACATTTGGTGCGGGCGGCGGCTTGGCCGGCC
ACTCACTGCACGCGGCTAAGCTGCTCAAGGAGTCGGCCAGCGCTGAGCTA
GAGCAGCAGCCGCAGGACTCGGATCTTGACGATGGACACGGACACTTACA
CATGCAAATTAAGCCCGAAGTCGACATTGGCGGCGTGAACCAAACGATGC
CCTTGGACATCTCCGGCGGTACCACACCATCCGAGCACGATGCGCCGAAC
TCCCAGTCCTCGCACTCGGGTCTGCAATGGACAGTTGTTGATTCCAACTA
TCCGCGCTTCTCCCTGCCCGCCTGCCAGTCCAACTTGTTGGGCAACGGCG
GAGGCAGCGGTGGTGGTGCCGGTAGCCAGAGCAGTGGTGCGAATAGCGCC
GGCGGCGTCAATAGCGATCAGCGGCAGCAGCACGAAGCCCAGCAGCAGGC
CACGCAACAGCAGCAGCATCTGCAGCAGCTGCACTACCAGCAGCAGCAAC
AGCAGGAGCAGGCCTCTGCCTCCGGACAGGCCTACTCGTCGCAGATCATT
ACCGTGAACAACCTAGTCGGAAGCTATGCGACGGCGGCCCAGAACCTTTC
GCCCACCTCGCCCAATGAATCAAACATGGTGCAATCGGTCTACAGTCAGG
GTCCGACGCCCACCCAATCCCCCGTGCACGCAGGAGTCGGTGGAGCAAGT
GCGGCTGGCGGAGCAGCGGGCAATGCCAGTGCTGGAAACGGTGGAGCCCC
TGGAGCGGCCAACCAGGTGGTGAAGCGCAAGAGATCGGTGAATCCGCAGG
GAGACGAAAACTTTATCCGAGCCCTGGAGGCGGTACGCACGGGAGGTATC
GGATTCTGCAAGGCGGCACGACTTTACGGAGTGAACAACAGGACACTCTG
GCTGGAATACAAAAAGCGTGGCTATCCGGTGTCACGTCCCAGCATAAAAG
CGCGTGTGGTCAAACAGGAGCCGAATCTGTCGCCCTCGCCGACGCCATCG
ACGAATCAGGGCGATGACAACACCAACGAAACGCTCGGCATGCAGATACC
ACCACAGGCGGAGACTCCGACACCTTCGCTCATGTGCACATCGCACCACA
CTGGCCTGGGAAGCGGAGCTGGAAGTTTGCCGGCCGGAGGAAACTCGCAC
CCAGCGATCGGGGTGATGAGCCTGTTCGATCCTCGATACATGGATTCGCC
CGGCAATGTGCACTCGATGACGCGGCAGCGTTACATCGAAGCCACCGGCG
GCGGAGCAGGTGCGGGAACGGGCGCAGGCACCGGCACCATCAACGTTAAT
CCGACCACCGCCATGAATCTACAGAGTATTAACTTCAACTCAATAGCAAG
CTTTCTAGACCAT
BO10974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BtbVII-RG | 2451 | CG43365-PG | 1..2229 | 17..2245 | 11145 | 100 | Plus |
| BtbVII-RE | 2232 | CG43365-PE | 1..2229 | 17..2245 | 11145 | 100 | Plus |
| BtbVII-RD | 2232 | CG43365-PD | 1..2229 | 17..2245 | 11145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BtbVII-RG | 3321 | CG43365-RG | 397..2626 | 16..2245 | 11150 | 100 | Plus |
| BtbVII-RE | 4016 | CG43365-RE | 383..2612 | 16..2245 | 11150 | 100 | Plus |
| BtbVII-RD | 4752 | CG43365-RD | 375..2604 | 16..2245 | 11150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3152454..3153530 | 1169..2245 | 5385 | 100 | Plus |
| 3L | 28110227 | 3L | 3150212..3150844 | 185..817 | 3165 | 100 | Plus |
| 3L | 28110227 | 3L | 3150927..3151172 | 815..1060 | 1230 | 100 | Plus |
| 3L | 28110227 | 3L | 3149982..3150154 | 16..188 | 865 | 100 | Plus |
| 3L | 28110227 | 3L | 3151264..3151374 | 1061..1171 | 555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 607..746 | 1346..1209 | 139 | 59 | Minus |
BO10974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:53 Download gff for
BO10974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RB | 1..2232 | 17..2246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:48 Download gff for
BO10974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RB | 266..2502 | 8..2245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:57 Download gff for
BO10974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RD | 376..2604 | 17..2247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:53 Download gff for
BO10974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RB | 266..2502 | 8..2245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:29 Download gff for
BO10974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RD | 376..2604 | 17..2247 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:29 Download gff for
BO10974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3149983..3150153 | 17..187 | 100 | -> | Plus |
| 3L | 3150215..3150842 | 188..815 | 100 | -> | Plus |
| 3L | 3150928..3151172 | 816..1060 | 100 | -> | Plus |
| 3L | 3151264..3151372 | 1061..1169 | 100 | -> | Plus |
| 3L | 3152455..3153530 | 1170..2247 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:57 Download gff for
BO10974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3149983..3150153 | 17..187 | 100 | -> | Plus |
| arm_3L | 3150215..3150842 | 188..815 | 100 | -> | Plus |
| arm_3L | 3150928..3151172 | 816..1060 | 100 | -> | Plus |
| arm_3L | 3151264..3151372 | 1061..1169 | 100 | -> | Plus |
| arm_3L | 3152455..3153530 | 1170..2247 | 99 | | Plus |
BO10974.pep Sequence
Translation from 16 to 2263
> BO10974.pep
MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLS
ACSSYFQALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLP
HILKTAEMLKIKGLAEMPTDPANLTKSDSKSSTDGTEMVGGAGVGTGAGN
SAGSLGAGSGSSVGDSLWSSSEAQQFQQQQQQQAQQQAQQQHHHHQQQQQ
LQQQQQQAQQQQQQQQHHHHHHQQQQSGQAQAAQTHHHQMRRTPSPLSAG
TSPATRRKRLRKSSNNGSGDRNNAEEQHNSSLDAGSGAGNAGLSLAQMNQ
MTFGAGGGLAGHSLHAAKLLKESASAELEQQPQDSDLDDGHGHLHMQIKP
EVDIGGVNQTMPLDISGGTTPSEHDAPNSQSSHSGLQWTVVDSNYPRFSL
PACQSNLLGNGGGSGGGAGSQSSGANSAGGVNSDQRQQHEAQQQATQQQQ
HLQQLHYQQQQQQEQASASGQAYSSQIITVNNLVGSYATAAQNLSPTSPN
ESNMVQSVYSQGPTPTQSPVHAGVGGASAAGGAAGNASAGNGGAPGAANQ
VVKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKK
RGYPVSRPSIKARVVKQEPNLSPSPTPSTNQGDDNTNETLGMQIPPQAET
PTPSLMCTSHHTGLGSGAGSLPAGGNSHPAIGVMSLFDPRYMDSPGNVHS
MTRQRYIEATGGGAGAGTGAGTGTINVNPTTAMNLQSINFNSIASFLDH
BO10974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BtbVII-PG | 816 | CG43365-PG | 1..743 | 1..743 | 3884 | 100 | Plus |
| BtbVII-PE | 743 | CG43365-PE | 1..743 | 1..743 | 3884 | 100 | Plus |
| BtbVII-PD | 743 | CG43365-PD | 1..743 | 1..743 | 3884 | 100 | Plus |
| BtbVII-PB | 743 | CG11494-PB | 1..743 | 1..743 | 3884 | 100 | Plus |
| BtbVII-PA | 743 | CG11494-PA | 1..743 | 1..743 | 3884 | 100 | Plus |
