Clone Sequence Records
BO10977.3prime Sequence
923 bp (835 high quality bases) assembled on 2006-04-19
> BO10977.3prime
ATGGTCTAGAAAGCTTGCACTCAAGGACAACTGGTTGAGGGACAGCAGTC
GCTCTACCGCCGCATTGATGTCCCCGAAGGTAGCGATCAGAGCCTGCAAG
TTGGCATCACGGTTGACAAAGCCCATGGCGTTCAGCTGCTCCAGCTGCGA
CTGGTAGCGCACCTCCGGCGGCTGTGTGTTGTCCGCGTTGTTCGACATCC
CGTTGAGCATGCGCATCATGAAGTCGTTGAAGAGCTGCGCGTTGGGACCA
CCGCCCGGGGCCAGGTTTGGAGTGCCGGTGCCGGCGTTGAGGCCGCTGCT
TGGCGAAACATTGTTGGTGCTGGCACCGCTGTTGCCCCCGCTCCCATCGC
CGCTGGCTGGATTCGTTCCGGTGCCGGCACCCGGTGGTGGCGGTGGAATG
CCCAGGGTGCCAACGAGACCTGGGGCCGCGCTGCGCAGCTGCTCCATGCC
CTGCTGGATCTGCAGGATAGCGTTCATTGCATCCGGATTGGTCAGCATGT
TCATCACCTCGGGGTTCTGCATTTGGGCCATAAACTGCGGCATCATCTGA
CGCACCTGCTCCTGCAGGGCGGGATTGTTAGACATGAGCGGACTGCTGCT
CAGCAAGCGCGCGGCCATGTCCGGGTCCTGTGACATGGACTCCATCATGG
AACGCGTGTAGGGCGCGTTCAGCAGGTTCTGCATCATGGCTGGATTGTCG
GCCATCTGCTGGAGCAGGCTTCGCATGGCCGGCGTGTTGAGCACATTGTT
CGGCGGCAGATCCCCCGTCGGATTGCCGGCGCCGGAGCCACCGACTGTTC
CATTGGTTCCCGAATTGGCACCGCCCCATGGATTCGGCAGGGGATTGCGG
TTCTCGGTGCCCTGCTGCGGGTTGTTGCCGGCTCCCTGACCGCCGCCGTC
GACAGGCCGGCAAAGGGGTGCGA
BO10977.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14224-PA | 1644 | CG14224-RA | 775..1641 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-RB | 3429 | CG14224-RB | 933..1834 | 919..19 | 4440 | 99.7 | Minus |
Ubqn-RA | 3011 | CG14224-RA | 933..1834 | 919..19 | 4440 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19685083..19685910 | 919..93 | 4045 | 99.5 | Minus |
X | 23542271 | X | 19685989..19686063 | 93..19 | 375 | 100 | Minus |
Blast to na_te.dros performed 2015-02-01 10:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 3790..3837 | 241..191 | 113 | 72.5 | Minus |
BO10977.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:54 Download gff for
BO10977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-PA | 736..1644 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:05 Download gff for
BO10977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-PA | 736..1644 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:30:55 Download gff for
BO10977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 929..1837 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:01 Download gff for
BO10977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 929..1837 | 15..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:01 Download gff for
BO10977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19685079..19685910 | 93..922 | 99 | -> | Minus |
X | 19685990..19686066 | 15..92 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:30:55 Download gff for
BO10977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19579112..19579943 | 93..922 | 99 | -> | Minus |
arm_X | 19580023..19580099 | 15..92 | 97 | | Minus |
BO10977.5prime Sequence
848 bp (788 high quality bases) assembled on 2006-04-19
> BO10977.5prime
GAAGTTATCAGTCGACATGGCGGAAGGCGGCAGCAAGCGCATCAACGTGG
TTGTAAAAACGCCAAAGGACAAGAAAACGGTCGAAGTTGACGAAGATTCT
GGAATAAAAGATTTCAAAATTCTGGTTGCACAAAAGTTCGAGGCGGAGCC
CGAGCAGCTCGTGCTCATTTTTGCCGGCAAAATTATGAAGGACACGGACA
CCCTTCAGATGCACAACATCAAGGACAACCTGACGGTGCATCTGGTGATT
AAGGCGCCGACGCGCAACAACGAGCAGCCGGCCCGACAGCCGGCTGACGT
GCGCCAAACGCCCTTTGGCCTCAATCAATTCGGTGGCCTGGCCGGAATGG
AGGCACTTGGAGCCGGATCGAACACGTTCATGGATCTGCAGGCGCGCATG
CAGAACGAGCTGCTCAACAATGGCGACATGCTGCGCTCCCTGATGGACAA
CCCGATGGTGCAGCAGATGATGAATAATCCGGATACCATGCGTCAGCTTA
TCACGTCCAATCCGCAAATGCATGACCTGATGCAGCGCAACCCCGAGATC
TCGCATATGCTTAACAATCCGGACCTGCTGCGCCAGACGATGGAGCTGGC
CCGCAATCCCTCGATGTTGCAGGAGCTGATGCGTTCGCACGACCGCGCCA
TGTCGAATCTGGAGTCGGTGCCGGGCGGCTATAGCGCCCTGCAGCGCATC
TACCGCGATATTCAGGAGCCAATGATGAACGCGGCCACGGAATCCTTTGG
TCGCAACCCCTTTGCCGGCCTGGTCGACGGCGGCGGTTCAGGAGCCGGCA
ACAACCCGCAGCAGGGCACCGAGAACCGCAATCCCCTGCCGAATCCAT
BO10977.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14224-PA | 1644 | CG14224-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-RB | 3429 | CG14224-RB | 189..1025 | 12..848 | 4170 | 99.9 | Plus |
Ubqn-RA | 3011 | CG14224-RA | 189..1025 | 12..848 | 4170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19684440..19685175 | 113..848 | 3680 | 100 | Plus |
X | 23542271 | X | 19683996..19684096 | 12..112 | 490 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:28:13 has no hits.
BO10977.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:55 Download gff for
BO10977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-PA | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:06 Download gff for
BO10977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-PA | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:28 Download gff for
BO10977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 187..1025 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:52 Download gff for
BO10977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 187..1025 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:52 Download gff for
BO10977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19683994..19684096 | 11..112 | 97 | -> | Plus |
X | 19684440..19685175 | 113..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:28 Download gff for
BO10977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19578027..19578129 | 11..112 | 97 | -> | Plus |
arm_X | 19578473..19579208 | 113..848 | 100 | | Plus |
BO10977.complete Sequence
1675 bp (1675 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631945
> BO10977.complete
GAAGTTATCAGTCGACATGGCGGAAGGCGGCAGCAAGCGCATCAACGTGG
TTGTAAAAACGCCAAAGGACAAGAAAACGGTCGAAGTTGACGAAGATTCT
GGAATAAAAGATTTCAAAATTCTGGTTGCACAAAAGTTCGAGGCGGAGCC
CGAGCAGCTCGTGCTCATTTTTGCCGGCAAAATTATGAAGGACACGGACA
CCCTTCAGATGCACAACATCAAGGACAACCTGACGGTGCATCTGGTGATT
AAGGCGCCGACGCGCAACAACGAGCAGCCGGCCCGACAGCCGGCTGACGT
GCGCCAAACGCCCTTTGGCCTCAATCAATTCGGTGGCCTGGCCGGAATGG
AGGCACTTGGAGCCGGATCGAACACGTTCATGGATCTGCAGGCGCGCATG
CAGAACGAGCTGCTCAACAATGGCGACATGCTGCGCTCCCTGATGGACAA
CCCGATGGTGCAGCAGATGATGAATAATCCGGATACCATGCGTCAGCTTA
TCACGTCCAATCCGCAAATGCATGACCTGATGCAGCGCAACCCCGAGATC
TCGCATATGCTTAACAATCCGGACCTGCTGCGCCAGACGATGGAGCTGGC
CCGCAATCCCTCGATGTTGCAGGAGCTGATGCGTTCGCACGACCGCGCCA
TGTCGAATCTGGAGTCGGTGCCGGGCGGCTATAGCGCCCTGCAGCGCATC
TACCGCGATATTCAGGAGCCAATGATGAACGCGGCCACGGAATCCTTTGG
TCGCAACCCCTTTGCCGGCCTGGTCGACGGCGGCGGTTCAGGAGCCGGCA
ACAACCCGCAGCAGGGCACCGAGAACCGCAATCCCCTGCCGAATCCATGG
GGCGGTGCCAATTCGGGAACCAATGGAACAGTCGGTGGCTCCGGCGCCGG
CAATCCGACGGGGGATCTGCCGCCGAACAATGTGCTCAACACGCCGGCCA
TGCGAAGCCTGCTCCAGCAGATGGCCGACAATCCAGCCATGATGCAGAAC
CTGCTGAACGCGCCCTACACGCGTTCCATGATGGAGTCCATGTCACAGGA
CCCGGACATGGCCGCGCGCTTGCTGAGCAGCAGTCCGCTCATGTCTAACA
ATCCCGCCCTGCAGGAGCAGGTGCGTCAGATGATGCCGCAGTTTATGGCC
CAAATGCAGAACCCCGAGGTGATGAACATGCTGACCAATCCGGATGCAAT
GAACGCTATCCTGCAGATCCAGCAGGGCATGGAGCAGCTGCGCAGCGCGG
CCCCAGGTCTCGTTGGCACCCTGGGCATTCCACCGCCACCACCGGGTGCC
GGCACCGGAACGAATCCAGCCAGCGGCGATGGGAGCGGGGGCAACAGCGG
TGCCAGCACCAACAATGTTTCGCCAAGCAGCGGCCTCAACGCCGGCACCG
GCACTCCAAACCTGGCCCCGGGCGGTGGTCCCAACGCGCAGCTCTTCAAC
GACTTCATGATGCGCATGCTCAACGGGATGTCGAACAACGCGGACAACAC
ACAGCCGCCGGAGGTGCGCTACCAGTCGCAGCTGGAGCAGCTGAACGCCA
TGGGCTTTGTCAACCGTGATGCCAACTTGCAGGCTCTGATCGCTACCTTC
GGGGACATCAATGCGGCGGTAGAGCGACTGCTGTCCCTCAACCAGTTGTC
CTTGAGTGCAAGCTTTCTAGACCAT
BO10977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-RB | 1644 | CG14224-PB | 1..1641 | 17..1657 | 8205 | 100 | Plus |
Ubqn-RA | 1644 | CG14224-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-RB | 3429 | CG14224-RB | 189..1834 | 12..1657 | 8215 | 99.9 | Plus |
Ubqn-RA | 3011 | CG14224-RA | 189..1834 | 12..1657 | 8215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19684440..19685910 | 113..1583 | 7355 | 100 | Plus |
X | 23542271 | X | 19683996..19684096 | 12..112 | 490 | 99 | Plus |
X | 23542271 | X | 19685989..19686063 | 1583..1657 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:27:59 has no hits.
BO10977.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:54 Download gff for
BO10977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-RA | 1..1644 | 17..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:50 Download gff for
BO10977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 247..1897 | 9..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:12 Download gff for
BO10977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 194..1834 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:54 Download gff for
BO10977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-RA | 247..1897 | 9..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:57 Download gff for
BO10977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 194..1834 | 17..1659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:57 Download gff for
BO10977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19684001..19684096 | 17..112 | 100 | -> | Plus |
X | 19684440..19685910 | 113..1583 | 100 | -> | Plus |
X | 19685990..19686063 | 1584..1659 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:12 Download gff for
BO10977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19578034..19578129 | 17..112 | 100 | -> | Plus |
arm_X | 19578473..19579943 | 113..1583 | 100 | -> | Plus |
arm_X | 19580023..19580096 | 1584..1659 | 97 | | Plus |
BO10977.pep Sequence
Translation from 16 to 1675
> BO10977.pep
MAEGGSKRINVVVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAEPEQLVL
IFAGKIMKDTDTLQMHNIKDNLTVHLVIKAPTRNNEQPARQPADVRQTPF
GLNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQ
MMNNPDTMRQLITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSM
LQELMRSHDRAMSNLESVPGGYSALQRIYRDIQEPMMNAATESFGRNPFA
GLVDGGGSGAGNNPQQGTENRNPLPNPWGGANSGTNGTVGGSGAGNPTGD
LPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTRSMMESMSQDPDMAA
RLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNPEVMNMLTNPDAMNAILQ
IQQGMEQLRSAAPGLVGTLGIPPPPPGAGTGTNPASGDGSGGNSGASTNN
VSPSSGLNAGTGTPNLAPGGGPNAQLFNDFMMRMLNGMSNNADNTQPPEV
RYQSQLEQLNAMGFVNRDANLQALIATFGDINAAVERLLSLNQLSLSASF
LDH
BO10977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-PB | 547 | CG14224-PB | 1..547 | 1..547 | 2828 | 100 | Plus |
Ubqn-PA | 547 | CG14224-PA | 1..547 | 1..547 | 2828 | 100 | Plus |
CG31528-PA | 344 | CG31528-PA | 7..232 | 9..278 | 273 | 27.3 | Plus |