Clone Sequence Records
BO10978.3prime Sequence
914 bp (827 high quality bases) assembled on 2006-04-19
> BO10978.3prime
ATGGTCTAGAAAGCTTGCAGCCGTACACTTCAAATGGAGCAGCGTTGACC
ATGGCCCACAGAGAACATCATCCACAGTAGGGTTCATCGTGATACCTTCC
AGGGCCTGAAAAGCATCCACATAGGACAGGTCTTGGAGCTGCCTGCCAAG
TTGACCGTGCTTGCACCAACCACTGACCCATAGCCGCCCGCATCGGCGGA
TCAGCAGAGTGTGACGAGATCCAGCAAACACCCTCAGCGGTGCGCAATCA
TCGTTGCTCTCCCCGCTTTGGGAGCAGGCACATTCGGGCAGATCTTGCAA
CTGGGGCAGCGGAAATACAGTGGGCTCTTTGAGGACGCCACCGGGTTTCA
TCACACGCAATCCCAGCTGACCGCTGCAGTTGAGGCCCCAGGTGTAGAGG
TCTCCAAAGGCGGATATGGCCGCACTGTGCCAACCACCGGCAGCAATTTG
AGTTATCTTGATCCCCGCCAGCGCCTCCAGCAATTGAGGCGTCTCCTCCA
CTCTCAGTTCCGCCAGACCCAACTGTCCGCGTAGTCCATTTCCCCAGGTG
AACACGTCGCCATTGGCATTGAGGAGCACGGCATGTTCATGGCCGCATTG
GAGCTGCTTCACCCGAAATTGGCGCTCGGAAAACTGATGCAGGCAGCTGG
GAATGCTGTAGACACAGTTTTCCGAACTTATCGCTACGTTTATGTGCGAT
CCACATGCAATATGCTCTATGATCGGCGACGAAGGCGCCTTGGCAGCCCC
AAAGATAGAGCGCTTTGTACCCGAATTGGATCTGGGAGCAGCTTCTAGTC
TAACAGCCACCAGTTCCGCTTGCAGTTTTGGTTGCACCCTGTAAAGCTGA
CCGCTTTGGAGTAGCACCAGGCAGTGGGAATCGGCAGCGGCAAGGGCCCT
TATGTTCCCCGTTG
BO10978.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-PA | 1122 | CG6678-RA | 224..1119 | 914..19 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-RA | 2843 | CG6678-RA | 702..1597 | 914..19 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21888837..21889267 | 458..28 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 21888173..21888554 | 914..533 | 1910 | 100 | Minus |
3R | 32079331 | 3R | 21888703..21888778 | 532..457 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:43:18 has no hits.
BO10978.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:56 Download gff for
BO10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-PA | 224..1122 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:07 Download gff for
BO10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-PA | 224..1122 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:29:58 Download gff for
BO10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 702..1609 | 10..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:21 Download gff for
BO10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 702..1609 | 10..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:21 Download gff for
BO10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21888173..21888554 | 533..914 | 100 | -> | Minus |
3R | 21888703..21888778 | 457..532 | 100 | -> | Minus |
3R | 21888839..21889276 | 18..456 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:29:58 Download gff for
BO10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17713895..17714276 | 533..914 | 100 | -> | Minus |
arm_3R | 17714425..17714500 | 457..532 | 100 | -> | Minus |
arm_3R | 17714561..17714998 | 18..456 | 99 | | Minus |
BO10978.5prime Sequence
895 bp (770 high quality bases) assembled on 2006-04-19
> BO10978.5prime
GAAGTTATCAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTG
GCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGC
GAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGG
CTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGC
TCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAAC
ATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAG
CGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTG
TTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATC
TTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATG
TGGATCGCACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCA
TTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAG
CTCCAATGCGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGT
GTTCACCTGGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGA
GAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATA
ACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGG
AGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTG
TGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCC
CAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAG
BO10978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-PA | 1122 | CG6678-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-RA | 2843 | CG6678-RA | 479..1357 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21888034..21888554 | 101..621 | 2605 | 100 | Plus |
3R | 32079331 | 3R | 21888837..21889036 | 696..895 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 21887507..21887591 | 17..101 | 425 | 100 | Plus |
3R | 32079331 | 3R | 21888703..21888778 | 622..697 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:43:35 has no hits.
BO10978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:57 Download gff for
BO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:09 Download gff for
BO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:24 Download gff for
BO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 474..1357 | 10..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:22 Download gff for
BO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 474..1357 | 10..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:22 Download gff for
BO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21887502..21887591 | 10..101 | 95 | -> | Plus |
3R | 21888035..21888554 | 102..621 | 100 | -> | Plus |
3R | 21888703..21888778 | 622..697 | 100 | -> | Plus |
3R | 21888839..21889036 | 698..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:24 Download gff for
BO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17713224..17713313 | 10..101 | 95 | -> | Plus |
arm_3R | 17713757..17714276 | 102..621 | 100 | -> | Plus |
arm_3R | 17714425..17714500 | 622..697 | 100 | -> | Plus |
arm_3R | 17714561..17714758 | 698..895 | 100 | | Plus |
BO10978.complete Sequence
1153 bp (1153 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631946
> BO10978.complete
GAAGTTATCAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTG
GCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGC
GAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGG
CTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGC
TCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAAC
ATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAG
CGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTG
TTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATC
TTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATG
TGGATCGCACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCA
TTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAG
CTCCAATGCGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGT
GTTCACCTGGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGA
GAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATA
ACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGG
AGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTG
TGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCC
CAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAGAGCAA
CGATGATTGCGCACCGCTGAGGGTGTTTGCTGGATCTCGTCACACTCTGC
TGATCCGCCGATGCGGGCGGCTATGGGTCAGTGGTTGGTGCAAGCACGGT
CAACTTGGCAGGCAGCTCCAAGACCTGTCCTATGTGGATGCTTTTCAGGC
CCTGGAAGGTATCACGATGAACCCTACTGTGGATGATGTTCTCTGTGGGC
CATGGTCAACGCTGCTCCATTTGAAGTGTACGGCTGCAAGCTTTCTAGAC
CAT
BO10978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-RA | 1122 | CG6678-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-RA | 2843 | CG6678-RA | 479..1597 | 17..1135 | 5595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21888034..21888554 | 101..621 | 2605 | 100 | Plus |
3R | 32079331 | 3R | 21888837..21889267 | 696..1126 | 2155 | 100 | Plus |
3R | 32079331 | 3R | 21887507..21887591 | 17..101 | 425 | 100 | Plus |
3R | 32079331 | 3R | 21888703..21888778 | 622..697 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:59:08 has no hits.
BO10978.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:31 Download gff for
BO10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 1..1122 | 17..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:49 Download gff for
BO10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 462..1597 | 10..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:45 Download gff for
BO10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 479..1597 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:31 Download gff for
BO10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 462..1597 | 10..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:06 Download gff for
BO10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 479..1597 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:06 Download gff for
BO10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21887507..21887591 | 17..101 | 100 | -> | Plus |
3R | 21888035..21888554 | 102..621 | 100 | -> | Plus |
3R | 21888703..21888778 | 622..697 | 100 | -> | Plus |
3R | 21888839..21889276 | 698..1137 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:45 Download gff for
BO10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17713229..17713313 | 17..101 | 100 | -> | Plus |
arm_3R | 17713757..17714276 | 102..621 | 100 | -> | Plus |
arm_3R | 17714425..17714500 | 622..697 | 100 | -> | Plus |
arm_3R | 17714561..17714998 | 698..1137 | 98 | | Plus |
BO10978.pep Sequence
Translation from 16 to 1153
> BO10978.pep
MPLLFTGFNAFGQHECVSGDVDCAAGFSELNAPVSTQNQCTISIGWRYAA
LAFGRKLCLRGLLDDGPNECVTLEATGNIRALAAADSHCLVLLQSGQLYR
VQPKLQAELVAVRLEAAPRSNSGTKRSIFGAAKAPSSPIIEHIACGSHIN
VAISSENCVYSIPSCLHQFSERQFRVKQLQCGHEHAVLLNANGDVFTWGN
GLRGQLGLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTW
GLNCSGQLGLRVMKPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAP
LRVFAGSRHTLLIRRCGRLWVSGWCKHGQLGRQLQDLSYVDAFQALEGIT
MNPTVDDVLCGPWSTLLHLKCTAASFLDH
BO10978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-PA | 373 | CG6678-PA | 1..373 | 1..373 | 1983 | 100 | Plus |
HERC2-PC | 4912 | CG11734-PC | 3069..3158 | 172..259 | 193 | 46.7 | Plus |
CG9153-PA | 1058 | CG9153-PA | 42..231 | 140..331 | 179 | 26.8 | Plus |
CG9153-PB | 1058 | CG9153-PB | 42..231 | 140..331 | 179 | 26.8 | Plus |
CG9153-PC | 1062 | CG9153-PC | 93..236 | 172..331 | 174 | 30.4 | Plus |
CG9153-PA | 1058 | CG9153-PA | 142..385 | 76..312 | 169 | 27.6 | Plus |
CG9153-PB | 1058 | CG9153-PB | 142..385 | 76..312 | 169 | 27.6 | Plus |
HERC2-PC | 4912 | CG11734-PC | 4122..4221 | 160..259 | 167 | 35 | Plus |
HERC2-PC | 4912 | CG11734-PC | 3127..3316 | 140..331 | 166 | 27.5 | Plus |
HERC2-PC | 4912 | CG11734-PC | 4296..4379 | 176..259 | 164 | 41.7 | Plus |
HERC2-PC | 4912 | CG11734-PC | 3123..3264 | 172..331 | 156 | 24.7 | Plus |