Clone BO10978 Report

Search the DGRC for BO10978

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:109
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG6678-RA
Protein status:BO10978.pep: validated full length
Sequenced Size:1153

Clone Sequence Records

BO10978.3prime Sequence

914 bp (827 high quality bases) assembled on 2006-04-19

> BO10978.3prime
ATGGTCTAGAAAGCTTGCAGCCGTACACTTCAAATGGAGCAGCGTTGACC
ATGGCCCACAGAGAACATCATCCACAGTAGGGTTCATCGTGATACCTTCC
AGGGCCTGAAAAGCATCCACATAGGACAGGTCTTGGAGCTGCCTGCCAAG
TTGACCGTGCTTGCACCAACCACTGACCCATAGCCGCCCGCATCGGCGGA
TCAGCAGAGTGTGACGAGATCCAGCAAACACCCTCAGCGGTGCGCAATCA
TCGTTGCTCTCCCCGCTTTGGGAGCAGGCACATTCGGGCAGATCTTGCAA
CTGGGGCAGCGGAAATACAGTGGGCTCTTTGAGGACGCCACCGGGTTTCA
TCACACGCAATCCCAGCTGACCGCTGCAGTTGAGGCCCCAGGTGTAGAGG
TCTCCAAAGGCGGATATGGCCGCACTGTGCCAACCACCGGCAGCAATTTG
AGTTATCTTGATCCCCGCCAGCGCCTCCAGCAATTGAGGCGTCTCCTCCA
CTCTCAGTTCCGCCAGACCCAACTGTCCGCGTAGTCCATTTCCCCAGGTG
AACACGTCGCCATTGGCATTGAGGAGCACGGCATGTTCATGGCCGCATTG
GAGCTGCTTCACCCGAAATTGGCGCTCGGAAAACTGATGCAGGCAGCTGG
GAATGCTGTAGACACAGTTTTCCGAACTTATCGCTACGTTTATGTGCGAT
CCACATGCAATATGCTCTATGATCGGCGACGAAGGCGCCTTGGCAGCCCC
AAAGATAGAGCGCTTTGTACCCGAATTGGATCTGGGAGCAGCTTCTAGTC
TAACAGCCACCAGTTCCGCTTGCAGTTTTGGTTGCACCCTGTAAAGCTGA
CCGCTTTGGAGTAGCACCAGGCAGTGGGAATCGGCAGCGGCAAGGGCCCT
TATGTTCCCCGTTG

BO10978.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-PA 1122 CG6678-RA 224..1119 914..19 4480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-RA 2843 CG6678-RA 702..1597 914..19 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21888837..21889267 458..28 2155 100 Minus
3R 32079331 3R 21888173..21888554 914..533 1910 100 Minus
3R 32079331 3R 21888703..21888778 532..457 380 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:43:18 has no hits.

BO10978.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:56 Download gff for BO10978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-PA 224..1122 18..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:07 Download gff for BO10978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-PA 224..1122 18..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:29:58 Download gff for BO10978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 702..1609 10..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:21 Download gff for BO10978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 702..1609 10..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:21 Download gff for BO10978.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21888173..21888554 533..914 100 -> Minus
3R 21888703..21888778 457..532 100 -> Minus
3R 21888839..21889276 18..456 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:29:58 Download gff for BO10978.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17713895..17714276 533..914 100 -> Minus
arm_3R 17714425..17714500 457..532 100 -> Minus
arm_3R 17714561..17714998 18..456 99   Minus

BO10978.5prime Sequence

895 bp (770 high quality bases) assembled on 2006-04-19

> BO10978.5prime
GAAGTTATCAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTG
GCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGC
GAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGG
CTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGC
TCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAAC
ATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAG
CGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTG
TTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATC
TTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATG
TGGATCGCACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCA
TTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAG
CTCCAATGCGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGT
GTTCACCTGGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGA
GAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATA
ACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGG
AGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTG
TGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCC
CAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAG

BO10978.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-PA 1122 CG6678-RA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-RA 2843 CG6678-RA 479..1357 17..895 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21888034..21888554 101..621 2605 100 Plus
3R 32079331 3R 21888837..21889036 696..895 1000 100 Plus
3R 32079331 3R 21887507..21887591 17..101 425 100 Plus
3R 32079331 3R 21888703..21888778 622..697 380 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:43:35 has no hits.

BO10978.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:54:57 Download gff for BO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:09 Download gff for BO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:24 Download gff for BO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 474..1357 10..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:22 Download gff for BO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 474..1357 10..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:22 Download gff for BO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21887502..21887591 10..101 95 -> Plus
3R 21888035..21888554 102..621 100 -> Plus
3R 21888703..21888778 622..697 100 -> Plus
3R 21888839..21889036 698..895 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:24 Download gff for BO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17713224..17713313 10..101 95 -> Plus
arm_3R 17713757..17714276 102..621 100 -> Plus
arm_3R 17714425..17714500 622..697 100 -> Plus
arm_3R 17714561..17714758 698..895 100   Plus

BO10978.complete Sequence

1153 bp (1153 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631946

> BO10978.complete
GAAGTTATCAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTG
GCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGC
GAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGG
CTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGC
TCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAAC
ATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAG
CGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTG
TTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATC
TTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATG
TGGATCGCACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCA
TTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAG
CTCCAATGCGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGT
GTTCACCTGGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGA
GAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATA
ACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGG
AGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTG
TGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCC
CAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAGAGCAA
CGATGATTGCGCACCGCTGAGGGTGTTTGCTGGATCTCGTCACACTCTGC
TGATCCGCCGATGCGGGCGGCTATGGGTCAGTGGTTGGTGCAAGCACGGT
CAACTTGGCAGGCAGCTCCAAGACCTGTCCTATGTGGATGCTTTTCAGGC
CCTGGAAGGTATCACGATGAACCCTACTGTGGATGATGTTCTCTGTGGGC
CATGGTCAACGCTGCTCCATTTGAAGTGTACGGCTGCAAGCTTTCTAGAC
CAT

BO10978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-RA 1122 CG6678-PA 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-RA 2843 CG6678-RA 479..1597 17..1135 5595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21888034..21888554 101..621 2605 100 Plus
3R 32079331 3R 21888837..21889267 696..1126 2155 100 Plus
3R 32079331 3R 21887507..21887591 17..101 425 100 Plus
3R 32079331 3R 21888703..21888778 622..697 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:59:08 has no hits.

BO10978.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:31 Download gff for BO10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 1..1122 17..1136 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:49 Download gff for BO10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 462..1597 10..1144 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:45 Download gff for BO10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 479..1597 17..1137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:31 Download gff for BO10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 462..1597 10..1144 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:06 Download gff for BO10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 479..1597 17..1137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:06 Download gff for BO10978.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21887507..21887591 17..101 100 -> Plus
3R 21888035..21888554 102..621 100 -> Plus
3R 21888703..21888778 622..697 100 -> Plus
3R 21888839..21889276 698..1137 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:45 Download gff for BO10978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17713229..17713313 17..101 100 -> Plus
arm_3R 17713757..17714276 102..621 100 -> Plus
arm_3R 17714425..17714500 622..697 100 -> Plus
arm_3R 17714561..17714998 698..1137 98   Plus

BO10978.pep Sequence

Translation from 16 to 1153

> BO10978.pep
MPLLFTGFNAFGQHECVSGDVDCAAGFSELNAPVSTQNQCTISIGWRYAA
LAFGRKLCLRGLLDDGPNECVTLEATGNIRALAAADSHCLVLLQSGQLYR
VQPKLQAELVAVRLEAAPRSNSGTKRSIFGAAKAPSSPIIEHIACGSHIN
VAISSENCVYSIPSCLHQFSERQFRVKQLQCGHEHAVLLNANGDVFTWGN
GLRGQLGLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTW
GLNCSGQLGLRVMKPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAP
LRVFAGSRHTLLIRRCGRLWVSGWCKHGQLGRQLQDLSYVDAFQALEGIT
MNPTVDDVLCGPWSTLLHLKCTAASFLDH

BO10978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-PA 373 CG6678-PA 1..373 1..373 1983 100 Plus
HERC2-PC 4912 CG11734-PC 3069..3158 172..259 193 46.7 Plus
CG9153-PA 1058 CG9153-PA 42..231 140..331 179 26.8 Plus
CG9153-PB 1058 CG9153-PB 42..231 140..331 179 26.8 Plus
CG9153-PC 1062 CG9153-PC 93..236 172..331 174 30.4 Plus
CG9153-PA 1058 CG9153-PA 142..385 76..312 169 27.6 Plus
CG9153-PB 1058 CG9153-PB 142..385 76..312 169 27.6 Plus
HERC2-PC 4912 CG11734-PC 4122..4221 160..259 167 35 Plus
HERC2-PC 4912 CG11734-PC 3127..3316 140..331 166 27.5 Plus
HERC2-PC 4912 CG11734-PC 4296..4379 176..259 164 41.7 Plus
HERC2-PC 4912 CG11734-PC 3123..3264 172..331 156 24.7 Plus