Clone Sequence Records
BO10988.3prime Sequence
932 bp (858 high quality bases) assembled on 2006-04-19
> BO10988.3prime
ATGGTCTAGAAAGCTTGCTGTCAGATGCGGCGTGGCCGCAGTCGCCGATT
TCCCCGCAAAGAATCGACTTCCGCCTGTCTGGTTGGTGAAGAGTAGCGTG
TCAACTGAGGGCAGCATCTGATTGGATCTCACCAGAAGAGGCACATTCAC
CATGGACACAGAGGGTGTCTGGGCCAAGCTCGTGGTCACAGACTGAACAC
CATTGCCCGTACTACTAAGCTTTCCGTGTGCATTCAGCGTAAAGGCGGGT
AGATAGTAGTTCCCAGATCGCACTGGTAGAGCATTCGTCGATATGGCGAC
ACTGGAGGCGCATGAGACAGCGGTCAGCTCCATGGAGGCGGGTGACGAAA
ACGGCGAGGACTCCAGTGAGGGGCAAGGTAGTCGGTCGCTGGGCTTACAA
GGCAAGAAGTCATCGTCTGGCAACAGCTCGTCCGGTAATTCATTCTTTAT
CTGGAAGTGCAGGGCAGCGGCCGAATCGGAAATGGCGTTGTCCGACGTCC
CCATTTCAGTGTTTGCATTAGGAGCATCGTACAGACCGCACTCCTCCATC
TCCAGGGCCTGCTCCATGATCAGCTCTTCGGCTGAAGTCAGACTAAGACC
GTGTAAGTCAAGGAACGGACCCTGAGTCTGCACTGGCTCCTTCTTGATTT
GCGGCACAGCAGGAATGGGCTCTAAGCTGGACTGCTGGGGTTGGCCCTGT
TGCAGCAGCTGCGGTTTTTGCTGCAGTTGCTTCGGTGCTAGCTGCTTTCG
TTCTCGCTTGGCTTTGGTCTGCTTAGGAGCCGGCGGGGCCAGCGGCACCA
GCACAGTGGTAAGTTCCTGCTGATGCTGTTGCGCCAGCGGCACAGGATGC
ACTTGCTGCAGAGCAGTACCGGCAGGTAGAGTTATTTCCCATGCAGCAAG
AGTGGGCTGCTGCGGCTGCTTCTTTTTCCGCG
BO10988.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1454-PA | 2610 | wdn-RA | 1694..2607 | 932..19 | 4495 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-RA | 3184 | CG1454-RA | 1946..2859 | 932..19 | 4525 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28808805..28809332 | 405..932 | 2595 | 99.4 | Plus |
| 3R | 32079331 | 3R | 28808308..28808693 | 19..404 | 1930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:29:18 has no hits.
BO10988.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:12 Download gff for
BO10988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-PA | 1694..2610 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:28 Download gff for
BO10988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1454-PA | 1694..2610 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:56:32 Download gff for
BO10988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 1946..2859 | 19..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:52 Download gff for
BO10988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 1946..2859 | 19..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:52 Download gff for
BO10988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28808308..28808693 | 19..404 | 100 | <- | Plus |
| 3R | 28808805..28809332 | 405..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:56:32 Download gff for
BO10988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24634030..24634415 | 19..404 | 100 | <- | Plus |
| arm_3R | 24634527..24635054 | 405..932 | 99 | | Plus |
BO10988.5prime Sequence
948 bp (853 high quality bases) assembled on 2006-04-19
> BO10988.5prime
GAAGTTATCAGTCGACATGGAAGGCGGCAAGGGCGAGGGCAAGAGAATGA
AAGAGGAGGCGCCAAGCAAGAAGTTGCCGCCTAAAATCTACGGCGGCGAT
GCGGGCACCCCCACGAAGGCGGCCCACGACGAGATACTCAGCTCTCTGCT
GCGGATCAACAACTTCGACTCGATATCGAGCATCAAGGACGAGTCGCTGG
ACATCGATCTGTCGGCGTGCGTGACCATCAGCTCCGCCAGCCTGGTCAAT
GGTAACAGTCTCTCCTCCACCGACTTTTGGCGCGTTTTGGACGAGAGTGC
CCAGAACAACACCGAGCTGAATCTATCCTCGGACGTCTGCCGCGATGACT
TGGCTGCCACCAGCTCGTCAACCGTGCCCAGCACTCTGACCAGTGATAAC
CACTCCAGCTCGGAGTTTAGTGTGACTTTCCTGCGGCCCGAGCCCCCGAA
TGCTTTCACTAATTCCCCGTTTAAGAAGACTTCGTCCAGCGGCACCTCCA
CACCCGTAAAGCTATCGCCCGAGCAGCTCCACCAGCAGCATCAGCTCCAA
ATGCCCCAGTCTCAGCTGCTGCAACGCAAGCCAAAGCTGCCGGCGGCGAC
GGCGGTGCGTCTGAAGGTCTTTAAGGAGGAGCCGCCCGAGGAGAAGCATC
CGCCGGAGCAAGTGGTCACCAAGGTAGAGGTGTGCGAGTCTGAGCTGCTG
CCGCCATCGTTTACCATATTCCAGCAGGCCAAATCGGCTGAATCGGTGGC
GGATGCGGCTAGCATGCCGCCTCCGGCTGCTTCGGAAACGAAGCCGTTGG
AGGTGGACCCGGCACCTCTACACAAGTGTCTCGACTGCAACGGACTGCTG
CTGGAGACGCCCGATGAGGTGGCCAAGCATGAGGCGGCCGCTCACAGGCT
GAGGCTCACCTATCGTTGCAGCGAGTGCCAGCGGGAATTCGAGTTGGT
BO10988.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1454-PA | 2610 | wdn-RA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-RA | 3184 | CG1454-RA | 253..1182 | 17..946 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28810156..28811085 | 946..17 | 4650 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 00:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 122..242 | 501..622 | 121 | 57.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9152..9272 | 501..622 | 121 | 57.7 | Plus |
BO10988.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:14 Download gff for
BO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-PA | 1..931 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:14:30 Download gff for
BO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1454-PA | 1..931 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:04:33 Download gff for
BO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 247..1183 | 10..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:18 Download gff for
BO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 247..1183 | 10..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:18 Download gff for
BO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28810154..28811091 | 10..948 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:04:33 Download gff for
BO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24635876..24636813 | 10..948 | 99 | | Minus |
BO10988.complete Sequence
2641 bp (2641 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631948
> BO10988.complete
GAAGTTATCAGTCGACATGGAAGGCGGCAAGGGCGAGGGCAAGAGAATGA
AAGAGGAGGCGCCAAGCAAGAAGTTGCCGCCTAAAATCTACGGCGGCGAT
GCGGGCACCCCCACGAAGGCGGCCCACGACGAGATACTCAGCTCTCTGCT
GCGGATCAACAACTTCGACTCGATATCGAGCATCAAGGACGAGTCGCTGG
ACATCGATCTGTCGGCGTGCGTGACCATCAGCTCCGCCAGCCTGGTCAAT
GGTAACAGTCTCTCCTCCACCGACTTTTGGCGCGTTTTGGACGAGAGTGC
CCAGAACAACACCGAGCTGAATCTATCCTCGGACGTCTGCCGCGATGACT
TGGCTGCCACCAGCTCGTCAACCGTGCCCAGCACTCTGACCAGTGATAAC
CACTCCAGCTCGGAGTTTAGTGTGACTTTCCTGCGGCCCGAGCCCCCGAA
TGCTTTCACTAATTCCCCGTTTAAGAAGACTTCGTCCAGCGGCACCTCCA
CACCCGTAAAGCTATCGCCCGAGCAGCTCCACCAGCAGCATCAGCTCCAA
ATGCCCCAGTCTCAGCTGCTGCAACGCAAGCCAAAGCTGCCGGCGGCGAC
GGCGGTGCGTCTGAAGGTCTTTAAGGAGGAGCCGCCCGAGGAGAAGCATC
CGCCGGAGCAAGTGGTCACCAAGGTAGAGGTGTGCGAGTCTGAGCTGCTG
CCGCCATCGTTTACCATATTCCAGCAGGCCAAATCGGCTGAATCGGTGGC
GGATGCGGCTAGCATGCCGCCTCCGGCTGCTTCGGAAACGAAGCCGTTGG
AGGTGGACCCGGCACCTCTACACAAGTGTCTCGACTGCAACGGACTGCTG
CTGGAGACGCCCGATGAGGTGGCCAAGCATGAGGCGGCCGCTCACAGGCT
GAGGCTCACCTATCGTTGCAGCGAGTGCCAGCGGGAATTCGAGTTGTTGG
CTGGTTTGAAGAAGCACCTAAAGACGCACCGCACCGAGGGCCGCAAGGAC
ACCTGGAAGAAGTGTCCTGACTGCGGCAAGTGCCTCAAATTGGGAAGCAT
GTGGATGCATCGGAAGATTCACAGCGATAACAAGAAGTACCAGTGCGACA
TCTGCGGCCAAAAGTTTGTGCAAAAAATAAACCTCACGCACCACGCACGG
ATTCACTCATCGGAGAAGCCGTACGAGTGTCCCGAGTGTCAGAAGCGATT
CCAGGAGCGCTCACATCTGCAGCGCCACCAGAAGTACCATGCGCAAACGC
GTTCCTATCGTTGCGAAAAGTGCGGCAAGATGTACAAAACGGAGCGCTGT
CTCAAGGTCCACAACTTGGTGCATCTTGAGCAGCGACCATTCGCGTGCAC
AGTGTGCGACAAGAGCTTCATCAGCAATTCGAAGCTTAAGCAGCACTCCA
ACATACACACAGGAATGCGCCCGTTCAAATGCAATTATTGTCCGCGAGAC
TTCACCAACTTCCCCAATTGGTTGAAGCACACGAGACGCCGACACAAGGT
GGACCACAAAACGGGCGAACACCTCGAGAACATTCCCTCCTACTGCTCTA
AAAAGTCCACTACAAACAAGGCCCAAAAGGCAGCCGCGGCAGCAGCAGCA
GCGGCGGCAGCATCTTCAGCTGTGAATCCCAACGAACTCTCCGCTTCTAG
TGAACTTAAAGCCAAGGCTAATCTTACGTCTACTGCTGCACCGGCTCCTG
CAAAACAAGCGCGGAAAAAGAAGCAGCCGCAGCAGGCCACTCTTGCTGCA
TTGGGAATAACTCTACCTGCCGGTACTGCTCTGCAGCAAGTGCATCCTGT
GCCGCTGGCGCAACAGCATCAGCAGGAACTTACCACTGTGCTGGTGCCGC
TGGCCCCGCCGGCTCCTAAGCAGACCAAAGCCAAGCGAGAACGAAAGCAG
CTAGCACCGAAGCAACTGCAGCAAAAACCGCAGCTGCTGCAACAGGGCCA
ACCCCAGCAGTCCAGCTTAGAGCCCATTCCTGCTGTGCCGCAAATCAAGA
AGGAGCCAGTGCAGACTCAGGGTCCGTTCCTTGACTTACACGGTCTTAGT
CTGACTTCAGCCGAAGAGCTGATCATGGAGCAGGCCCTGGAGATGGAGGA
GTGCGGTCTGTACGATGCTCCTAATGCAAACACTGAAATGGGGACGTCGG
ACAACGCCATTTCCGATTCGGCCGCTGCCCTGCACTTCCAGATAAAGAAT
GAATTACCGGACGAGCTGTTGCCAGACGATGACTTCTTGCCTTGTAAGCC
CAGCGACCGACTACCTTGCCCCTCACTGGAGTCCTCGCCGTTTTCGTCAC
CCGCCTCCATGGAGCTGACCGCTGTCTCATGCGCCTCCAGTGTCGCCATA
TCGACGAATGCTCTACCAGTGCGATCTGGGAACTACTATCTACCCGCCTT
TACGCTGAATGCACACGGAAAGCTTAGTAGTACGGGCAATGGTGTTCAGT
CTGTGACCACGAGCTTGGCCCAGACACCCTCTGTGTCCATGGTGAATGTG
CCTCTTCTGGTGAGATCCAATCAGATGCTGCCCTCAGTTGACACGCTACT
CTTCACCAACCAGACAGGCGGAAGTCGATTCTTTGCGGGGAAATCGGCGA
CTGCGGCCACGCCGCATCTGACAGCAAGCTTTCTAGACCAT
BO10988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-RA | 2610 | CG1454-PA | 1..2607 | 17..2623 | 13035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-RA | 3184 | CG1454-RA | 253..2859 | 17..2623 | 13035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28808805..28810010 | 2237..1032 | 6030 | 100 | Minus |
| 3R | 32079331 | 3R | 28810070..28811085 | 1032..17 | 5080 | 100 | Minus |
| 3R | 32079331 | 3R | 28808308..28808693 | 2623..2238 | 1930 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 122..242 | 501..622 | 121 | 57.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9152..9272 | 501..622 | 121 | 57.7 | Plus |
BO10988.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:42 Download gff for
BO10988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 1..2610 | 17..2626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:33 Download gff for
BO10988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 248..2860 | 10..2623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:17 Download gff for
BO10988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 253..2859 | 17..2625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:43 Download gff for
BO10988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 248..2860 | 10..2623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:50 Download gff for
BO10988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 253..2859 | 17..2625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:50 Download gff for
BO10988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28808305..28808693 | 2238..2625 | 99 | <- | Minus |
| 3R | 28808805..28810009 | 1033..2237 | 100 | <- | Minus |
| 3R | 28810070..28811085 | 17..1032 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:17 Download gff for
BO10988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24634027..24634415 | 2238..2625 | 99 | <- | Minus |
| arm_3R | 24634527..24635731 | 1033..2237 | 100 | <- | Minus |
| arm_3R | 24635792..24636807 | 17..1032 | 100 | | Minus |
BO10988.pep Sequence
Translation from 16 to 2641
> BO10988.pep
MEGGKGEGKRMKEEAPSKKLPPKIYGGDAGTPTKAAHDEILSSLLRINNF
DSISSIKDESLDIDLSACVTISSASLVNGNSLSSTDFWRVLDESAQNNTE
LNLSSDVCRDDLAATSSSTVPSTLTSDNHSSSEFSVTFLRPEPPNAFTNS
PFKKTSSSGTSTPVKLSPEQLHQQHQLQMPQSQLLQRKPKLPAATAVRLK
VFKEEPPEEKHPPEQVVTKVEVCESELLPPSFTIFQQAKSAESVADAASM
PPPAASETKPLEVDPAPLHKCLDCNGLLLETPDEVAKHEAAAHRLRLTYR
CSECQREFELLAGLKKHLKTHRTEGRKDTWKKCPDCGKCLKLGSMWMHRK
IHSDNKKYQCDICGQKFVQKINLTHHARIHSSEKPYECPECQKRFQERSH
LQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACTVCDKS
FISNSKLKQHSNIHTGMRPFKCNYCPRDFTNFPNWLKHTRRRHKVDHKTG
EHLENIPSYCSKKSTTNKAQKAAAAAAAAAAASSAVNPNELSASSELKAK
ANLTSTAAPAPAKQARKKKQPQQATLAALGITLPAGTALQQVHPVPLAQQ
HQQELTTVLVPLAPPAPKQTKAKRERKQLAPKQLQQKPQLLQQGQPQQSS
LEPIPAVPQIKKEPVQTQGPFLDLHGLSLTSAEELIMEQALEMEECGLYD
APNANTEMGTSDNAISDSAAALHFQIKNELPDELLPDDDFLPCKPSDRLP
CPSLESSPFSSPASMELTAVSCASSVAISTNALPVRSGNYYLPAFTLNAH
GKLSSTGNGVQSVTTSLAQTPSVSMVNVPLLVRSNQMLPSVDTLLFTNQT
GGSRFFAGKSATAATPHLTASFLDH
BO10988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-PA | 869 | CG1454-PA | 1..869 | 1..869 | 4540 | 100 | Plus |
| Kr-h1-PA | 791 | CG45074-PA | 217..586 | 299..682 | 405 | 26.5 | Plus |
| Kr-h1-PB | 845 | CG45074-PB | 271..640 | 299..682 | 405 | 26.5 | Plus |
| CG15269-PA | 587 | CG15269-PA | 325..518 | 299..491 | 389 | 35.7 | Plus |
| CG12299-PA | 736 | CG12299-PA | 101..702 | 111..739 | 388 | 24.2 | Plus |
| CG15269-PA | 587 | CG15269-PA | 123..491 | 156..500 | 282 | 23.6 | Plus |
| Kr-h1-PA | 791 | CG45074-PA | 90..347 | 236..521 | 252 | 25.8 | Plus |
| Kr-h1-PB | 845 | CG45074-PB | 144..401 | 236..521 | 252 | 25.8 | Plus |
| CG15269-PA | 587 | CG15269-PA | 377..515 | 293..432 | 243 | 33.6 | Plus |
| CG15269-PA | 587 | CG15269-PA | 293..415 | 381..501 | 175 | 34.7 | Plus |
