Clone Sequence Records
BO11007.3prime Sequence
956 bp (831 high quality bases) assembled on 2006-04-19
> BO11007.3prime
ATGGTCTAGAAAGCTTGCTTTGAGCAGGGCATCCACATCGCTCTTGGGGT
CGGGTGCCAGTGAGCTCCAGGGCGCATCGCTGCACAGCGGCAGGGAAACC
TCGCTGTCCGCCTCCACCACGCAGCTCTCACGCAGTTGAAAGAATTGGCC
CACCAATCCGTCAATCCAGCTGTGCAGCTCCTGTCCCAGCATTTTCCCTT
TGGCCAGGGACTCCTCGCGCATGGTGAACTGCTCGTCGTCGGTTTGAAGG
TGCTGCTGCCACTCCACGGGCATCTCAAAATCTTCAGGCAGAGCTACAGT
CAAGCCGGCGTTTAGCGCCTCAGCATCTGAGGACTTTGCTAGCGGATAGC
CCTTGTAGTAGGCCAGTGGAGCTATTAGGAATTTCAACTGCGCATAGATC
GAATTGCGGCCTATTAACTTGGCTGTCCAGATGCCCGGTGTGATCGGGTG
TTTGAGCAGGGTTTTCGAGTGGTTTATCACATCGCTGGTGGAATCCTCAA
CATGCAATTCATTAAAATCTTGCAATCGGCCCAGCGGATCTATCCACAGC
AGGGTGAGGTTGTACGAATGGGAAGCGGCGCCCGAATCTGCGTTTGCTTG
GAGTGTGTAGCTCAAAAGCAAGTCACTTTGGGGACCCAAGAGCTTTCCAA
AGTTGCGGGCAATCTGCTCCTTTTGATCGAAATCTGTAGAGACCTCAAAG
TTGCGTAATCGCTTGCTGAAGCGAGCATTCCTCGCCAGCTTTCCTTGCTG
CGTCGGTCGCACTCTCGTCTCCAAGTGCAGCGGCTTTCCAGTAGATCCTC
TGGCTCTGTAGCGCACCAGGAACCCCTTGTACTGGTCCCGGTGGAGGTAG
TGAGTGAGTTCAATCAACTCCAGGGGATACAATTTCGCTTGACGCGCAGA
CAGACGCATTACGCTATCTCCAATGCTTCTGGGCAAGTCGTCTCCTGATC
CATGGA
BO11007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32300-PB | 2631 | oxt-RB | 1691..2628 | 956..19 | 4665 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 1950..2887 | 956..19 | 4675 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2259332..2260269 | 19..956 | 4675 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:30:37 has no hits.
BO11007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:35 Download gff for
BO11007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-PB | 1692..2631 | 16..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:02 Download gff for
BO11007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32300-PB | 1692..2631 | 16..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:57:20 Download gff for
BO11007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 1951..2892 | 13..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:21:03 Download gff for
BO11007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 1951..2892 | 13..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:21:03 Download gff for
BO11007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2259327..2260268 | 13..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:57:20 Download gff for
BO11007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2259327..2260268 | 13..955 | 99 | | Plus |
BO11007.5prime Sequence
898 bp (789 high quality bases) assembled on 2006-04-19
> BO11007.5prime
GAAGTTATCAGTCGACATGGAGCAGTCTGTGTCCGCCCGCTGGCTGAAGC
GCTATCGCGCATTCTTCCTCATCCTGCTGCTTATCGTGGCCATCCAGTTG
TTCCTGGCCTACAAGTCCCTGGACATCGTAGGCGGCGGTTCCGGTTCCGG
ATTTGATGCGGCTGAAGCGCCTGCCAGTCCTCCGCCTCCGCATGCTCAGG
CACGGGTCCAACCGCCCGCCAGGACCAAGCTTACTGCCCAGCAACTGGGC
TTCCAGCCAGAGTGCGACATTCTCGCCAGAGAGGCCATCTCCGCCCTGCA
GCGCGCCAAAACGAAAGACTGTCGAGAACATATCGCGCAGATCGCCTGCG
CAATCCAAGCCGGACGCTTCTATGCGCCGCAGCTCCGGAGCAGCTGTCCA
GCTGGTAATCACACGGCGAACGTTTCTTTGGGATGCTTCAAGGATGAGAA
AGATCGCCGCCTTCTGGCCGGCTACTACAGCAGCTCCAAGACCTCCAATT
CTCCGGCCAAATGCGTGGAGCTATGTCTGCAAAGCGGTTACCCGTACGCA
GGGGTGCAGTACGGTCGCGAGTGCTTCTGCGGTTACGACCCGCCTCCTAA
AGCGTCGAAGCTGCCGGACTCCAGTTGCAACACCAAGTGCCTGGGCAACG
CCAAGGAAATCTGCGGCGGATTCTATGCCATGAACATATACGAGACCGGA
ATAGCCAAGTTCACCGCTCAACTGGCGGCCACCACTCCTTCGGAGGAAAC
GAAGCGCGTGCGGATCGCATTTCTGCTGACGCTCAACGGAAGAGCGCTGC
GTCAGGTGCACCGACTTCTGAGGGCGCTCTATGCACCGGAGCACGTTTAC
TACATCCATGTGGACGAGCGCCAAGATTACCTGTACCGAAAGCTGCTG
BO11007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32300-PB | 2631 | oxt-RB | 1..882 | 17..898 | 4385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 259..1141 | 16..898 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2261715..2262406 | 707..16 | 3460 | 100 | Minus |
| 3L | 28110227 | 3L | 2261453..2261613 | 868..708 | 790 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:30:15 has no hits.
BO11007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:36 Download gff for
BO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-PB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:03 Download gff for
BO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32300-PB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:30 Download gff for
BO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 259..1141 | 16..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:12 Download gff for
BO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 259..1141 | 16..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:12 Download gff for
BO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2261078..2261107 | 869..898 | 100 | <- | Minus |
| 3L | 2261453..2261613 | 708..868 | 99 | <- | Minus |
| 3L | 2261715..2262406 | 16..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:30 Download gff for
BO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2261078..2261107 | 869..898 | 100 | <- | Minus |
| arm_3L | 2261453..2261613 | 708..868 | 99 | <- | Minus |
| arm_3L | 2261715..2262406 | 16..707 | 100 | | Minus |
BO11007.complete Sequence
2662 bp (2662 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631952
> BO11007.complete
GAAGTTATCAGTCGACATGGAGCAGTCTGTGTCCGCCCGCTGGCTGAAGC
GCTATCGCGCATTCTTCCTCATCCTGCTGCTTATCGTGGCCATCCAGTTG
TTCCTGGCCTACAAGTCCCTGGACATCGTAGGCGGCGGTTCCGGTTCCGG
ATTTGATGCGGCTGAAGCGCCTGCCAGTCCTCCGCCTCCGCATGCTCAGG
CACGGGTCCAACCGCCCGCCAGGACCAAGCTTACTGCCCAGCAACTGGGC
TTCCAGCCAGAGTGCGACATTCTCGCCAGAGAGGCCATCTCCGCCCTGCA
GCGCGCCAAAACGAAAGACTGTCGAGAACATATCGCGCAGATCGCCTGCG
CAATCCAAGCCGGACGCTTCTATGCGCCGCAGCTCCGGAGCAGCTGTCCA
GCTGGTAATCACACGGCGAACGTTTCTTTGGGATGCTTCAAGGATGAGAA
AGATCGCCGCCTTCTGGCCGGCTACTACAGCAGCTCCAAGACCTCCAATT
CTCCGGCCAAATGCGTGGAGCTATGTCTGCAAAGCGGTTACCCGTACGCA
GGGGTGCAGTACGGTCGCGAGTGCTTCTGCGGTTACGACCCGCCTCCTAA
AGCGTCGAAGCTGCCGGACTCCAGTTGCAACACCAAGTGCCTGGGCAACG
CCAAGGAAATCTGCGGCGGATTCTATGCCATGAACATATACGAGACCGGA
ATAGCCAAGTTCACCGCTCAACTGGCGGCCACCACTCCTTCGGAGGAAAC
GAAGCGCGTGCGGATCGCATTTCTGCTGACGCTCAACGGAAGAGCGCTGC
GTCAGGTGCACCGACTTCTGAAGGCGCTCTATGCACCGGAGCACGTTTAC
TACATCCATGTGGACGAGCGCCAAGATTACCTGTACCGAAAGCTGCTGGA
GTTGGAGTCAAAGTTCCCCAACATACGTTTGGCTCGGAAGCGATTCTCCA
CCATATGGGGTGGAGCCTCTCTCCTGACCATGCTGCTCCAGTGCATGGAG
GACCTACTGCAGTCCAACTGGCACTGGGACTTTGTGATCAACCTTAGCGA
AAGTGATTTTCCAGTGAAGACCCTCGACAAGTTGGTGGATTTCTTGAGCG
CCAATCCTGGCAGGAACTTTGTTAAGGGCCACGGCCGGGAGACACAGAAG
TTCATCCAGAAGCAGGGCTTGGACAAGACGTTCGTCGAGTGCGACACGCA
CATGTGGAGAATAGGAGATCGGAAGTTGCCAGCTGGCATTCAAGTGGACG
GAGGCAGTGACTGGGTGGCGCTATCACGACCTTTTGTGGGCTATGTTACT
CATCCCAGGGAAGACGATGAGTTGTTGCAGGCTCTTCTAAAGCTCTTCCG
ACACACGCTCCTGCCGGCGGAATCGTTTTTCCACACGGTCCTCAGGAATA
CCAAGCATTGCACGAGCTATGTGGACAACAACCTGCACGTCACCAACTGG
AAGCGGAAGCAGGGTTGCAAATGCCAGTACAAGCATGTGGTGGATTGGTG
CGGATGCAGTCCAAACGACTTTAAGCCAGAAGATTGGCCCAGGCTGCAGG
CCACGGAGCAGAAATCACTGTTCTTCGCCCGCAAGTTTGAGCCCGTTATC
AACCAGGCGGTGCTGCTCCAGCTGGAGGAGTGGCTCTACGGGCCATACAC
CAGCGAATACGCCAATCTGCACGGCTACTGGCAGTCGCTGTATCACCACG
AGGATGTCCATGGATCAGGAGACGACTTGGCCAGAAGCATTGGAGATAGC
GTAATGCGTCTGTCTGCGCGTCAAGCGAAATTGTATCCCCTGGAGTTGAT
TGAACTCACTCACTACCTCCACCGGGACCAGTACAAGGGGTTCCTGGTGC
GCTACAGAGCCAGAGGATCTACTGGAAAGCCGCTGCACTTGGAGACGAGA
GTGCGACCGACGCAGCAAGGAAAGCTGGCGAGGAATGCTCGCTTCAGCAA
GCGATTACGCAACTTTGAGGTCTCTACAGATTTCGATCAAAAGGAGCAGA
TTGCCCGCAACTTTGGAAAGCTCTTGGGTCCCCAAAGTGACTTGCTTTTG
AGCTACACACTCCAAGCAAACGCAGATTCGGGCGCCGCTTCCCATTCGTA
CAACCTCACCCTGCTGTGGATAGATCCGCTGGGCCGATTGCAAGATTTTA
ATGAATTGCATGTTGAGGATTCCACCAGCGATGTGATAAACCACTCGAAA
ACCCTGCTCAAACACCCGATCACACCGGGCATCTGGACAGCCAAGTTAAT
AGGCCGCAATTCGATCTATGCGCAGTTGAAATTCCTAATAGCTCCACTGG
CCTACTACAAGGGCTATCCGCTAGCAAAGTCCTCAGATGCTGAGGCGCTA
AACGCCGGCTTGACTGTAGCTCTGCCTGAAGATTTTGAGATGCCCGTGGA
GTGGCAGCAGCACCTTCAAACCGACGACGAGCAGTTCACCATGCGCGAGG
AGTCCCTGGCCAAAGGGAAAATGCTGGGACAGGAGCTGCACAGCTGGATT
GACGGATTGGTGGGCCAATTCTTTCAACTGCGTGAGAGCTGCGTGGTGGA
GGCGGACAGCGAGGTTTCCCTGCCGCTGTGCAGCGATGCGCCCTGGAGCT
CACTGGCACCCGACCCCAAGAGCGATGTGGATGCCCTGCTCAAAGCAAGC
TTTCTAGACCAT
BO11007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 2631 | CG32300-PB | 1..2628 | 17..2644 | 13140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 259..2887 | 16..2644 | 13145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2259332..2261109 | 2644..867 | 8890 | 100 | Minus |
| 3L | 28110227 | 3L | 2261715..2262406 | 707..16 | 3460 | 100 | Minus |
| 3L | 28110227 | 3L | 2261453..2261613 | 868..708 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:28:34 has no hits.
BO11007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:45 Download gff for
BO11007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 1..2631 | 17..2647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:37 Download gff for
BO11007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 256..2889 | 16..2650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:43 Download gff for
BO11007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 260..2887 | 17..2646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:45 Download gff for
BO11007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 256..2889 | 16..2650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:40 Download gff for
BO11007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 260..2887 | 17..2646 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:40 Download gff for
BO11007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2259329..2261107 | 869..2646 | 99 | <- | Minus |
| 3L | 2261453..2261613 | 708..868 | 100 | <- | Minus |
| 3L | 2261715..2262405 | 17..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:43 Download gff for
BO11007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2259329..2261107 | 869..2646 | 99 | <- | Minus |
| arm_3L | 2261453..2261613 | 708..868 | 100 | <- | Minus |
| arm_3L | 2261715..2262405 | 17..707 | 100 | | Minus |
BO11007.pep Sequence
Translation from 16 to 2662
> BO11007.pep
MEQSVSARWLKRYRAFFLILLLIVAIQLFLAYKSLDIVGGGSGSGFDAAE
APASPPPPHAQARVQPPARTKLTAQQLGFQPECDILAREAISALQRAKTK
DCREHIAQIACAIQAGRFYAPQLRSSCPAGNHTANVSLGCFKDEKDRRLL
AGYYSSSKTSNSPAKCVELCLQSGYPYAGVQYGRECFCGYDPPPKASKLP
DSSCNTKCLGNAKEICGGFYAMNIYETGIAKFTAQLAATTPSEETKRVRI
AFLLTLNGRALRQVHRLLKALYAPEHVYYIHVDERQDYLYRKLLELESKF
PNIRLARKRFSTIWGGASLLTMLLQCMEDLLQSNWHWDFVINLSESDFPV
KTLDKLVDFLSANPGRNFVKGHGRETQKFIQKQGLDKTFVECDTHMWRIG
DRKLPAGIQVDGGSDWVALSRPFVGYVTHPREDDELLQALLKLFRHTLLP
AESFFHTVLRNTKHCTSYVDNNLHVTNWKRKQGCKCQYKHVVDWCGCSPN
DFKPEDWPRLQATEQKSLFFARKFEPVINQAVLLQLEEWLYGPYTSEYAN
LHGYWQSLYHHEDVHGSGDDLARSIGDSVMRLSARQAKLYPLELIELTHY
LHRDQYKGFLVRYRARGSTGKPLHLETRVRPTQQGKLARNARFSKRLRNF
EVSTDFDQKEQIARNFGKLLGPQSDLLLSYTLQANADSGAASHSYNLTLL
WIDPLGRLQDFNELHVEDSTSDVINHSKTLLKHPITPGIWTAKLIGRNSI
YAQLKFLIAPLAYYKGYPLAKSSDAEALNAGLTVALPEDFEMPVEWQQHL
QTDDEQFTMREESLAKGKMLGQELHSWIDGLVGQFFQLRESCVVEADSEV
SLPLCSDAPWSSLAPDPKSDVDALLKASFLDH
BO11007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-PB | 876 | CG32300-PB | 1..876 | 1..876 | 4654 | 100 | Plus |
