Clone BO11009 Report

Search the DGRC for BO11009

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:9
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)05822-RA
Protein status:BO11009.pep:
Sequenced Size:1834

Clone Sequence Records

BO11009.3prime Sequence

952 bp (820 high quality bases) assembled on 2006-04-19

> BO11009.3prime
ATGGTCTAGAAAGCTTGCCAACGTAGGCAGATTGGCGGGCACCTGGTCCA
GGAAGTTGGCCGGAAACTGTCCCTGACGACCCGCCACCTCGCCGTACAGC
CAATCCTCGTTAATCCTATAAAGCACTGTAACCAATTCGTTCTCCTGCAA
GGCGAGATCTCCTTCGACTTCGCCCGGGAAGTGATACAAACAAAGCGCCG
TCGGCAGTTGCTGTTGTGACGGACTGGGTGACGGTGCTGCAGCACTAGCG
GTTGGAGCTGCAGCAGCGCCACCAGTGGCCCCCAATGGCACCTTGATGTC
CACGTAGTTAATTGGAAAAATGCCCTCACATCCGGAACGCGTGCGTCCGC
GCAACCACTCCGGCGTGGGATGGTCCAACAGATAGATTTTCTCGCCTTCT
CTAAAACTAAGATCGCCCGGCTCGATGCCATCGAAATCGTAAAGCGCAAC
GGCGTAAGGAACCACTTCCTCCTCCATGTAGCCCTGGCATCCGTTGCTGA
GCGCTAGCGCATCCACTTTCCCGTTGATCACGTCCAGCAGTGAGATTCCT
CCGCTAGATGCCGGCGGCGGCGGTGGTGGTGGTCCTTTGGGCATCGGCGG
CGATGGTGGTGTCTCCGATCCTGCGTAACCTGATGGTATGCTATAACCTG
GCGGCAAATGGCCCCCAATAAATGGCGGTGGTTTCGGAGCCTTTGGCTTT
TGCGATATCTTGGGCTTGATGATGGTGGGCATGGTAAGCGATTGAGTGGG
CGGCAACAGACTCTTGCCATTGCACAGCGGATTGTCCGAGCCGCGCGACT
GCACTTGGTACGTCTGACGCACTGGGGCGGAGCCAAAGCTATCGACTCCC
CCGAGTCAAACGCTATCCACCGCCTCCCACGGATCCAGCGGACTCTGTGT
GGAGGGTCGTGATCGATGATAATCGTCCTCGAATCCGCTCTCCGGCTGCG
AA

BO11009.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7129-PA 1803 l(3)05822-RA 867..1800 952..19 4645 99.8 Minus
CG7129-PB 1803 l(3)05822-RB 867..1800 952..19 4645 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-RD 2580 CG7129-RD 931..1864 952..19 4655 99.9 Minus
l(3)05822-RC 2603 CG7129-RC 954..1887 952..19 4655 99.9 Minus
l(3)05822-RB 2634 CG7129-RB 985..1918 952..19 4655 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18290079..18290632 399..952 2755 99.8 Plus
3R 32079331 3R 18289765..18290020 144..399 1280 100 Plus
3R 32079331 3R 18289582..18289709 19..146 640 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:54:04 has no hits.

BO11009.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:37 Download gff for BO11009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7129-PA 869..1803 15..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:04 Download gff for BO11009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7129-PB 869..1803 15..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:30:49 Download gff for BO11009.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 985..1921 15..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:15:24 Download gff for BO11009.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 985..1921 15..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:15:24 Download gff for BO11009.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18289579..18289707 15..144 98 <- Plus
3R 18289766..18290020 145..399 100 <- Plus
3R 18290080..18290632 400..952 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:30:49 Download gff for BO11009.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14115301..14115429 15..144 98 <- Plus
arm_3R 14115488..14115742 145..399 100 <- Plus
arm_3R 14115802..14116354 400..952 99   Plus

BO11009.5prime Sequence

948 bp (799 high quality bases) assembled on 2006-04-19

> BO11009.5prime
GAAGTTATCAGTCGACATGACCATTCCATCGAGACCGGCGCCCGCACCGC
CCGGATCACGTGGCCAGAGCGCAGCGGCTGGGGCAAATGCCAGCCTGGAA
CAGCTGCGTCTCCAGCTGCAGCAGCAGCACCTGCAGCAACAGCAAGGCGC
CGGCGGTGGACTCCAAAAGCTGACCATCAAGCTGCCGCCACCGCCCAAGG
GACCGCTGCAGTCGCAGCACAAACGTACCACCGTCAGCAACAATAACAAC
GGCAGCCTCTTCGACGAGCCAACGGGTGGCACGAGCATTACGCGGAAGTT
TCCACAGGCACGCTACACGCCGGCCACCAACTGGGACGACGATCCATTTG
GAGGCGGGAGCAACGGAAATGATCGCTTCAAGAAGATGCCACCGCCGCGA
CCGCCGCCGCCCAAGGTGCTGGTCAATGGGCAGAACATGACCAAGTCCAA
CTCCTCGATGGCATCGGCGGTCACTGGCGGCACGGGCAGACTCATGTCGA
ACATTTTCCATCGCAAGAAGTCGACGTCCACGGCATCCGCCGCTGCTTCC
AAGGCTGCAGCGGAAAATCGTGTCTACGGCCTGAGCAGCGGCAATGCCGG
TGCAACACCAAGTAACAACAGCAGCAGCAGTGCATCGTCGGCGGCCTTTA
GCAATGTGGATTGGAATGCAGCGTGGAACACGGCCACCACTACCACAACC
ACCACCTCGAGCAGCAGCCACAGCTCCCATTATGCCTCGCAGCAGACGGC
CGATGCGCAGCTCATCAGCTTCGATTCGCCCCCTTCGTCGCCAACCTTTA
CCCAGAAGTCCAATAGCGACTGCGTCAGCGTGGACAGCTTCAGTTCGGAC
AGCAACTTTAGTTCGCCCAACAATGGCAGCGTTTCGCAGCCGGAGAGCGG
ATTCGAGGACGAATAACATCGATCACGACCCTCCACACAGAGTCCGCT

BO11009.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7129-PA 1803 l(3)05822-RA 1..932 17..948 4610 99.7 Plus
CG7129-PB 1803 l(3)05822-RB 1..932 17..948 4610 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-RD 2580 CG7129-RD 64..996 16..948 4635 99.8 Plus
l(3)05822-RC 2603 CG7129-RC 87..1019 16..948 4635 99.8 Plus
l(3)05822-RB 2634 CG7129-RB 118..1050 16..948 4635 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18290567..18291499 948..16 4635 99.8 Minus
Blast to na_te.dros performed 2015-02-12 19:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6887 94..265 183 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6885 114..287 174 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6900 113..254 173 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2484 99..256 172 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2502 99..256 163 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2471 113..267 162 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6923 63..253 149 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1530..1582 91..144 132 74.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3240..3311 75..145 132 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6828..6939 99..210 128 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6962 13..266 120 54.9 Plus
roo 9092 roo DM_ROO 9092bp 1066..1140 71..144 120 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7379..7447 101..170 113 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1062..1107 99..144 113 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6805..6892 63..145 112 63.6 Plus

BO11009.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:38 Download gff for BO11009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7129-PA 1..932 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:06 Download gff for BO11009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7129-PB 1..932 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:25 Download gff for BO11009.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 109..1050 5..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:54:51 Download gff for BO11009.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 109..1050 5..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:54:51 Download gff for BO11009.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18290567..18291509 5..948 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:25 Download gff for BO11009.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14116289..14117231 5..948 99   Minus

BO11009.complete Sequence

1834 bp assembled on 2008-01-16

GenBank Submission: FJ631953

> BO11009.complete
GAAGTTATCAGTCGACATGACCATTCCATCGAGACCGGCGCCCGCACCGC
CCGGATCACGTGGCCAGAGCGCAGCGGCTGGGGCAAATGCCAGCCTGGAA
CAGCTGCGTCTCCAGCTGCAGCAGCAGCACCTGCAGCAACAGCAAGGCGC
CGGCGGTGGACTCCAAAAGCTGACCATCAAGCTGCCGCCACCGCCCAAGG
GACCGCTGCAGTCGCAGCACAAACGTACCACCGTCAGCAACAATAACAAC
GGCAGCCTCTTCGACGAGCCAACGGGTGGCACGAGCATTACGCGGAAGTT
TCCACAGGCACGCTACACGCCGGCCACCAACTGGGACGACGATCCATTTG
GAGGCGGGAGCAACGGAAATGATCGCTTCAAGAAGATGCCACCGCCGCGA
CCGCCGCCGCCCAAGGTGCTGGTCAATGGGCAGAACATGACCAAGTCCAA
CTCCTCGATGGCATCGGCGGTCACTGGCGGCACGGGCAGACTCATGTCGA
ACATTTTCCATCGCAAGAAGTCGACGTCCACGGCATCCGCCGCTGCTTCC
AAGGCTGCAGCGGAAAATCGTGTCTACGGCCTGAGCAGCGGCAATGCCGG
TGCAACACCAAGTAACAACAGCAGCAGCAGTGCATCGTCGGCGGCCTTTA
GCAATGTGGATTGGAATGCAGCGTGGAACACGGCCACCACTACCACAACC
ACCACCTCGAGCAGCAGCCACAGCTCCCATTATGCCTCGCAGCAGACGGC
CGATGCGCAGCTCATCAGCTTCGATTCGCCCCCTTCGTCGCCAACCTTTA
CCCAGAAGTCCAATAGCGACTGCGTCAGCGTGGACAGCTTCAGTTCGGAC
AGCAACTTTAGTTCGCCCAACAATGGCAGCGTTTCGCAGCCGGAGAGCGG
ATTCGAGGACGATTATCATCGATCACGACCCTCCACACAGAGTCCGCTGG
ATCCGTGGGAGGCGGTGGATAGCGTTGGACTCGGGGGAGTCGATAGCTTT
GGCTCCGCCCCAGTGCGTCAGACGTACCAAGTGCAGTCGCGCGGCTCGGA
CAATCCGCTGTGCAATGGCAAGAGTCTGTTGCCGCCCACTCAATCGCTTA
CCATGCCCACCATCATCAAGCCCAAGATATCGCAAAAGCCAAAGGCTCCG
AAACCACCGCCATTTATTGGGGGCCATTTGCCGCCAGGTTATAGCATACC
ATCAGGTTACGCAGGATCGGAGACACCACCATCGCCGCCGATGCCCAAAG
GACCACCACCACCGCCGCCGCCGGCATCTAGCGGAGGAATCTCACTGCTG
GACGTGATCAACGGGAAAGTGGATGCGCTAGCGCTCAGCAACGGATGCCA
GGGCTACATGGAGGAGGAAGTGGTTCCTTACGCCGTTGCGCTTTACGATT
TCGATGGCATCGAGCCGGGCGATCTTAGTTTTAGAGAAGGCGAGAAAATC
TATCTGTTGGACCATCCCACGCCGGAGTGGTTGCGCGGACGCACGCGTTC
CGGATGTGAGGGCATTTTTCCAATTAACTACGTGGACATCAAGGTGCCAT
TGGGGGCCACTGGTGGCGCTGCTGCAGCTCCAACCGCTAGTGCTGCAGCA
CCGTCACCCAGTCCGTCACAACAGCAACTGCCGACGGCGCTTTGTTTGTA
TCACTTCCCGGGCGAAGTCGAAGGAGATCTCGCCTTGCAGGAGAACGAAT
TGGTTACAGTGCTTTATAGGATTAACGAGGATTGGCTGTACGGCGAGGTG
GCGGGTCGTCAGGGACAGTTTCCGGCCAACTTCCTGGACCAGGTGCCCGC
CAATCTGCCTACGTTGGCAAGCTTTCTAGACCAT

BO11009.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-RD 1803 CG7129-PD 1..1800 17..1816 9000 100 Plus
l(3)05822-RC 1803 CG7129-PC 1..1800 17..1816 9000 100 Plus
l(3)05822-RB 1803 CG7129-PB 1..1800 17..1816 9000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-RD 2580 CG7129-RD 64..1864 16..1816 9005 100 Plus
l(3)05822-RC 2603 CG7129-RC 87..1887 16..1816 9005 100 Plus
l(3)05822-RB 2634 CG7129-RB 118..1918 16..1816 9005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18290079..18291499 1436..16 7105 100 Minus
3R 32079331 3R 18289765..18290020 1691..1436 1280 100 Minus
3R 32079331 3R 18289582..18289709 1816..1689 640 100 Minus
Blast to na_te.dros performed 2014-11-27 20:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6887 94..265 183 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6885 114..287 174 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6900 113..254 173 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2484 99..256 172 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2502 99..256 163 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2471 113..267 162 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6923 63..253 149 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1530..1582 91..144 132 74.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3240..3311 75..145 132 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6828..6939 99..210 128 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6962 13..266 120 54.9 Plus
roo 9092 roo DM_ROO 9092bp 1066..1140 71..144 120 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7379..7447 101..170 113 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1062..1107 99..144 113 71.7 Plus

BO11009.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:01 Download gff for BO11009.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 1..1803 17..1820 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:37 Download gff for BO11009.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 119..1918 17..1818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:57 Download gff for BO11009.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 119..1918 17..1818 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:01 Download gff for BO11009.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 109..1921 5..1820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:13 Download gff for BO11009.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 119..1918 17..1818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:13 Download gff for BO11009.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18289580..18289707 1691..1818 98 <- Minus
3R 18289766..18290020 1436..1690 100 <- Minus
3R 18290080..18291498 17..1435 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:57 Download gff for BO11009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14115302..14115429 1691..1818 98 <- Minus
arm_3R 14115488..14115742 1436..1690 100 <- Minus
arm_3R 14115802..14117220 17..1435 100   Minus

BO11009.pep Sequence

Translation from 16 to 1834

> BO11009.pep
MTIPSRPAPAPPGSRGQSAAAGANASLEQLRLQLQQQHLQQQQGAGGGLQ
KLTIKLPPPPKGPLQSQHKRTTVSNNNNGSLFDEPTGGTSITRKFPQARY
TPATNWDDDPFGGGSNGNDRFKKMPPPRPPPPKVLVNGQNMTKSNSSMAS
AVTGGTGRLMSNIFHRKKSTSTASAAASKAAAENRVYGLSSGNAGATPSN
NSSSSASSAAFSNVDWNAAWNTATTTTTTTSSSSHSSHYASQQTADAQLI
SFDSPPSSPTFTQKSNSDCVSVDSFSSDSNFSSPNNGSVSQPESGFEDDY
HRSRPSTQSPLDPWEAVDSVGLGGVDSFGSAPVRQTYQVQSRGSDNPLCN
GKSLLPPTQSLTMPTIIKPKISQKPKAPKPPPFIGGHLPPGYSIPSGYAG
SETPPSPPMPKGPPPPPPPASSGGISLLDVINGKVDALALSNGCQGYMEE
EVVPYAVALYDFDGIEPGDLSFREGEKIYLLDHPTPEWLRGRTRSGCEGI
FPINYVDIKVPLGATGGAAAAPTASAAAPSPSPSQQQLPTALCLYHFPGE
VEGDLALQENELVTVLYRINEDWLYGEVAGRQGQFPANFLDQVPANLPTL
ASFLDH

BO11009.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-PD 600 CG7129-PD 1..600 1..600 3173 100 Plus
l(3)05822-PC 600 CG7129-PC 1..600 1..600 3173 100 Plus
l(3)05822-PB 600 CG7129-PB 1..600 1..600 3173 100 Plus
l(3)05822-PA 600 CG7129-PA 1..600 1..600 3173 100 Plus
CAP-PN 313 CG18408-PN 61..180 456..591 166 31.6 Plus