Clone Sequence Records
BO11010.3prime Sequence
803 bp (753 high quality bases) assembled on 2006-04-19
> BO11010.3prime
ATGGTCTAGAAAGCTTGCTCGCGGGCACATGGCGTGACGACCTCCATCGA
CGGGCAGACTGATTCCCGTGGTGAAGCTGGCCTGATCGCTGGCCAGGAAG
GCAATGGCGGCAGCCACCTCCTTGACATCGCCAGGACGGCCCAAGGCGTG
GGTTATCTTGCAGTGTTCGAGGAACTTGGCATAGGTCTCCTCGTCCATGC
CGCCACGCTTGTGAATGTCAGTCACAATCACGCCGGGATTCACGGCGTTT
ACGCGGACTCCTTTGGGGGCCAGTTCCAGGGCTATGCAGGCCGTGAACTG
GTCCACCGCTGCCTTAGACACATTGTAGGCCAGGACACCAGGAAAGGCAC
GCAGTCCACAGACACTGGATACGTTTACGATATTGCCCTTGGTCTTGACT
AGCTCTGGAGTGGCCAGCATGGTTAGTTGGTACAGGGAACGCACATTGGT
GTTCATCAGACGATCGAATTGCTCCAGGCTGGTGGCTTCGATGGAGCCTG
TCTCCAGGATGCCCGCATTGTTAACGAGCACATCGATGCGACCGTGCTTG
GCCAGAGTGGCGCCCACAATCTGCTGCACCTCCGCCTCCTTGGTCATGTC
CGCCTGCAGTTCCAATGGCGTTGCTCCTCCGGCCGCCACAATGTTGTCGG
CCGTCTCCTTCAGCTTCTCCTCGTTGCGACCCACGATGACCAGGAGCCCT
CCGAGTTTCGCCAAATGGACGGCGGCACTTGCTCCGATGCCGGAGCTGGC
GCCGGGTACAATAATCACTTTGTCCTTGAAGGATGACATGTCGACTGATA
ACT
BO11010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-PA | 774 | CG31549-RA | 1..771 | 789..19 | 3805 | 99.7 | Minus |
CG31548-PA | 771 | CG31548-RA | 610..715 | 177..72 | 305 | 91.5 | Minus |
CG12171-PA | 774 | CG12171-RA | 658..767 | 132..23 | 200 | 87.2 | Minus |
CG31548-PA | 771 | CG31548-RA | 367..426 | 420..361 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 991 | CG31549-RB | 66..836 | 789..19 | 3825 | 99.7 | Minus |
CG31549-RA | 1130 | CG31549-RA | 205..975 | 789..19 | 3825 | 99.7 | Minus |
CG12171-RA | 1014 | CG12171-RA | 75..832 | 780..23 | 955 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5632396..5633166 | 789..19 | 3825 | 99.7 | Minus |
3R | 32079331 | 3R | 5633701..5634458 | 780..23 | 955 | 75.1 | Minus |
3R | 32079331 | 3R | 5634825..5635142 | 73..390 | 390 | 74.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:49:22 has no hits.
BO11010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:39 Download gff for
BO11010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 1..774 | 18..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:07 Download gff for
BO11010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 1..774 | 18..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:05:12 Download gff for
BO11010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..975 | 19..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:08 Download gff for
BO11010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..975 | 19..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:08 Download gff for
BO11010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5632387..5633166 | 19..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:05:12 Download gff for
BO11010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1458109..1458888 | 19..797 | 99 | | Minus |
BO11010.5prime Sequence
803 bp (721 high quality bases) assembled on 2006-04-19
> BO11010.5prime
GAAGTTATCAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTA
CCGGCGCCAGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAA
CTCGGAGGGCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGA
GACGGCCGACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGC
AGGCGGACATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACT
CTGGCCAAGCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCT
GGAGACAGGCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGA
TGAACACCAATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCA
GAGCTAGTCAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGG
ACTGCGTGCCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGG
TGGACCAGTTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTC
CGCGTAAACGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCG
TGGCGGCATGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGA
TAACCCACGCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCC
ATTGCCTTCCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCT
GCCCGTCGATGGAGGTCGTCACGCCATGTGCCCGCGAGCAAGCTTTCTAG
ACC
BO11010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-PA | 774 | CG31549-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG31548-PA | 771 | CG31548-RA | 610..715 | 629..734 | 305 | 91.5 | Plus |
CG12171-PA | 774 | CG12171-RA | 658..767 | 674..783 | 200 | 87.2 | Plus |
CG31548-PA | 771 | CG31548-RA | 367..426 | 386..445 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 991 | CG31549-RB | 66..836 | 17..787 | 3855 | 100 | Plus |
CG31549-RA | 1130 | CG31549-RA | 205..975 | 17..787 | 3855 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 75..832 | 26..783 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5632396..5633166 | 17..787 | 3855 | 100 | Plus |
3R | 32079331 | 3R | 5633701..5634458 | 26..783 | 970 | 75.2 | Plus |
3R | 32079331 | 3R | 5634825..5635142 | 733..416 | 390 | 74.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:14:44 has no hits.
BO11010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:40 Download gff for
BO11010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:08 Download gff for
BO11010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:07:58 Download gff for
BO11010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..975 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:08 Download gff for
BO11010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..975 | 9..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:08 Download gff for
BO11010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5632387..5633166 | 9..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:07:58 Download gff for
BO11010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1458109..1458888 | 9..787 | 99 | | Plus |
BO11010.complete Sequence
805 bp (805 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631954
> BO11010.complete
GAAGTTATCAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTA
CCGGCGCCAGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAA
CTCGGAGGGCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGA
GACGGCCGACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGC
AGGCGGACATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACT
CTGGCCAAGCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCT
GGAGACAGGCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGA
TGAACACCAATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCA
GAGCTAGTCAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGG
ACTGCGTGCCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGG
TGGACCAGTTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTC
CGCGTAAACGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCG
TGGCGGCATGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGA
TAACCCACGCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCC
ATTGCCTTCCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCT
GCCCGTCGATGGAGGTCGTCACGCCATGTGCCCGCGAGCAAGCTTTCTAG
ACCAT
BO11010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 774 | CG31549-PB | 1..771 | 17..787 | 3855 | 100 | Plus |
CG31549-RA | 774 | CG31549-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG12171-RA | 774 | CG12171-PA | 10..767 | 26..783 | 970 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 991 | CG31549-RB | 66..836 | 17..787 | 3855 | 100 | Plus |
CG31549-RA | 1130 | CG31549-RA | 205..975 | 17..787 | 3855 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 75..832 | 26..783 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5632396..5633166 | 17..787 | 3855 | 100 | Plus |
3R | 32079331 | 3R | 5633701..5634458 | 26..783 | 970 | 75.2 | Plus |
3R | 32079331 | 3R | 5634825..5635142 | 733..416 | 390 | 74.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:56:14 has no hits.
BO11010.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:46 Download gff for
BO11010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:43 Download gff for
BO11010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..975 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:50 Download gff for
BO11010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 205..975 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:46 Download gff for
BO11010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..975 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:29 Download gff for
BO11010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 205..975 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:29 Download gff for
BO11010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5632396..5633166 | 17..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:50 Download gff for
BO11010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1458118..1458888 | 17..789 | 99 | | Plus |
BO11010.pep Sequence
Translation from 16 to 805
> BO11010.pep
MSSFKDKVIIVTGASSGIGASAAVHLAKLGGLLVIVGRNEEKLKETADNI
VAAGGATPLELQADMTKEAEVQQIVGATLAKHGRIDVLVNNAGILETGSI
EATSLEQFDRLMNTNVRSLYQLTMLATPELVKTKGNIVNVSSVCGLRAFP
GVLAYNVSKAAVDQFTACIALELAPKGVRVNAVNPGVIVTDIHKRGGMDE
ETYAKFLEHCKITHALGRPGDVKEVAAAIAFLASDQASFTTGISLPVDGG
RHAMCPRASFLDH
BO11010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-PB | 257 | CG31549-PB | 1..257 | 1..257 | 1281 | 100 | Plus |
CG31549-PA | 257 | CG31549-PA | 1..257 | 1..257 | 1281 | 100 | Plus |
CG12171-PA | 257 | CG12171-PA | 1..257 | 1..257 | 1058 | 80.9 | Plus |
CG31548-PA | 256 | CG31548-PA | 2..256 | 3..257 | 914 | 69 | Plus |
CG31546-PA | 264 | CG31546-PA | 11..264 | 4..257 | 706 | 56.5 | Plus |