Clone BO11010 Report

Search the DGRC for BO11010

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG31549-RA
Protein status:BO11010.pep: validated full length
Sequenced Size:805

Clone Sequence Records

BO11010.3prime Sequence

803 bp (753 high quality bases) assembled on 2006-04-19

> BO11010.3prime
ATGGTCTAGAAAGCTTGCTCGCGGGCACATGGCGTGACGACCTCCATCGA
CGGGCAGACTGATTCCCGTGGTGAAGCTGGCCTGATCGCTGGCCAGGAAG
GCAATGGCGGCAGCCACCTCCTTGACATCGCCAGGACGGCCCAAGGCGTG
GGTTATCTTGCAGTGTTCGAGGAACTTGGCATAGGTCTCCTCGTCCATGC
CGCCACGCTTGTGAATGTCAGTCACAATCACGCCGGGATTCACGGCGTTT
ACGCGGACTCCTTTGGGGGCCAGTTCCAGGGCTATGCAGGCCGTGAACTG
GTCCACCGCTGCCTTAGACACATTGTAGGCCAGGACACCAGGAAAGGCAC
GCAGTCCACAGACACTGGATACGTTTACGATATTGCCCTTGGTCTTGACT
AGCTCTGGAGTGGCCAGCATGGTTAGTTGGTACAGGGAACGCACATTGGT
GTTCATCAGACGATCGAATTGCTCCAGGCTGGTGGCTTCGATGGAGCCTG
TCTCCAGGATGCCCGCATTGTTAACGAGCACATCGATGCGACCGTGCTTG
GCCAGAGTGGCGCCCACAATCTGCTGCACCTCCGCCTCCTTGGTCATGTC
CGCCTGCAGTTCCAATGGCGTTGCTCCTCCGGCCGCCACAATGTTGTCGG
CCGTCTCCTTCAGCTTCTCCTCGTTGCGACCCACGATGACCAGGAGCCCT
CCGAGTTTCGCCAAATGGACGGCGGCACTTGCTCCGATGCCGGAGCTGGC
GCCGGGTACAATAATCACTTTGTCCTTGAAGGATGACATGTCGACTGATA
ACT

BO11010.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-PA 774 CG31549-RA 1..771 789..19 3805 99.7 Minus
CG31548-PA 771 CG31548-RA 610..715 177..72 305 91.5 Minus
CG12171-PA 774 CG12171-RA 658..767 132..23 200 87.2 Minus
CG31548-PA 771 CG31548-RA 367..426 420..361 150 90 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 991 CG31549-RB 66..836 789..19 3825 99.7 Minus
CG31549-RA 1130 CG31549-RA 205..975 789..19 3825 99.7 Minus
CG12171-RA 1014 CG12171-RA 75..832 780..23 955 75.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5632396..5633166 789..19 3825 99.7 Minus
3R 32079331 3R 5633701..5634458 780..23 955 75.1 Minus
3R 32079331 3R 5634825..5635142 73..390 390 74.8 Plus
Blast to na_te.dros performed on 2015-02-12 10:49:22 has no hits.

BO11010.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:39 Download gff for BO11010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 1..774 18..789 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:07 Download gff for BO11010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 1..774 18..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:05:12 Download gff for BO11010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..975 19..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:08 Download gff for BO11010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..975 19..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:08 Download gff for BO11010.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5632387..5633166 19..797 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:05:12 Download gff for BO11010.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1458109..1458888 19..797 99   Minus

BO11010.5prime Sequence

803 bp (721 high quality bases) assembled on 2006-04-19

> BO11010.5prime
GAAGTTATCAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTA
CCGGCGCCAGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAA
CTCGGAGGGCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGA
GACGGCCGACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGC
AGGCGGACATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACT
CTGGCCAAGCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCT
GGAGACAGGCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGA
TGAACACCAATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCA
GAGCTAGTCAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGG
ACTGCGTGCCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGG
TGGACCAGTTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTC
CGCGTAAACGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCG
TGGCGGCATGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGA
TAACCCACGCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCC
ATTGCCTTCCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCT
GCCCGTCGATGGAGGTCGTCACGCCATGTGCCCGCGAGCAAGCTTTCTAG
ACC

BO11010.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-PA 774 CG31549-RA 1..771 17..787 3855 100 Plus
CG31548-PA 771 CG31548-RA 610..715 629..734 305 91.5 Plus
CG12171-PA 774 CG12171-RA 658..767 674..783 200 87.2 Plus
CG31548-PA 771 CG31548-RA 367..426 386..445 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 991 CG31549-RB 66..836 17..787 3855 100 Plus
CG31549-RA 1130 CG31549-RA 205..975 17..787 3855 100 Plus
CG12171-RA 1014 CG12171-RA 75..832 26..783 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5632396..5633166 17..787 3855 100 Plus
3R 32079331 3R 5633701..5634458 26..783 970 75.2 Plus
3R 32079331 3R 5634825..5635142 733..416 390 74.8 Minus
Blast to na_te.dros performed on 2015-02-02 13:14:44 has no hits.

BO11010.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:40 Download gff for BO11010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 1..774 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:08 Download gff for BO11010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 1..774 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:07:58 Download gff for BO11010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..975 9..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:08 Download gff for BO11010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..975 9..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:08 Download gff for BO11010.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5632387..5633166 9..787 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:07:58 Download gff for BO11010.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1458109..1458888 9..787 99   Plus

BO11010.complete Sequence

805 bp (805 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ631954

> BO11010.complete
GAAGTTATCAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTA
CCGGCGCCAGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAA
CTCGGAGGGCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGA
GACGGCCGACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGC
AGGCGGACATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACT
CTGGCCAAGCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCT
GGAGACAGGCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGA
TGAACACCAATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCA
GAGCTAGTCAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGG
ACTGCGTGCCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGG
TGGACCAGTTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTC
CGCGTAAACGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCG
TGGCGGCATGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGA
TAACCCACGCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCC
ATTGCCTTCCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCT
GCCCGTCGATGGAGGTCGTCACGCCATGTGCCCGCGAGCAAGCTTTCTAG
ACCAT

BO11010.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 774 CG31549-PB 1..771 17..787 3855 100 Plus
CG31549-RA 774 CG31549-PA 1..771 17..787 3855 100 Plus
CG12171-RA 774 CG12171-PA 10..767 26..783 970 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 991 CG31549-RB 66..836 17..787 3855 100 Plus
CG31549-RA 1130 CG31549-RA 205..975 17..787 3855 100 Plus
CG12171-RA 1014 CG12171-RA 75..832 26..783 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5632396..5633166 17..787 3855 100 Plus
3R 32079331 3R 5633701..5634458 26..783 970 75.2 Plus
3R 32079331 3R 5634825..5635142 733..416 390 74.8 Minus
Blast to na_te.dros performed on 2014-11-27 16:56:14 has no hits.

BO11010.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:46 Download gff for BO11010.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 1..774 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:43 Download gff for BO11010.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..975 9..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:50 Download gff for BO11010.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 205..975 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:46 Download gff for BO11010.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..975 9..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:29 Download gff for BO11010.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 205..975 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:29 Download gff for BO11010.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5632396..5633166 17..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:50 Download gff for BO11010.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1458118..1458888 17..789 99   Plus

BO11010.pep Sequence

Translation from 16 to 805

> BO11010.pep
MSSFKDKVIIVTGASSGIGASAAVHLAKLGGLLVIVGRNEEKLKETADNI
VAAGGATPLELQADMTKEAEVQQIVGATLAKHGRIDVLVNNAGILETGSI
EATSLEQFDRLMNTNVRSLYQLTMLATPELVKTKGNIVNVSSVCGLRAFP
GVLAYNVSKAAVDQFTACIALELAPKGVRVNAVNPGVIVTDIHKRGGMDE
ETYAKFLEHCKITHALGRPGDVKEVAAAIAFLASDQASFTTGISLPVDGG
RHAMCPRASFLDH

BO11010.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-PB 257 CG31549-PB 1..257 1..257 1281 100 Plus
CG31549-PA 257 CG31549-PA 1..257 1..257 1281 100 Plus
CG12171-PA 257 CG12171-PA 1..257 1..257 1058 80.9 Plus
CG31548-PA 256 CG31548-PA 2..256 3..257 914 69 Plus
CG31546-PA 264 CG31546-PA 11..264 4..257 706 56.5 Plus