Clone Sequence Records
BO11011.3prime Sequence
767 bp (625 high quality bases) assembled on 2006-04-19
> BO11011.3prime
ATGGTCTAGAAAGCTTGCAGAAATCTCCATGGGCACCGCCTGGACGCGTT
CGGTGACGAGTAGGTCCTTAATGTTGGTGTGCAGCACGGTTGAGGTTCCG
GTCTTGAAGCGGTAGTCCAACTGGCGCTTGCCCTTCTTGTTAGCCAGCTC
ATAGTTGCGCAGATACTCAACACTGCCCTTGCGGATAACACACAGATCGA
TGTTGGATCCCGAACCCAGATCGTTAAACACTCCGGAGGCGATGGCATCG
CGCACCAGTTTCTTGCCCTCCTCTTCGGACAAGTCAGGTTTCCAGCGACT
TTCGAAAACGGTCATGGCGGCCAGGGAACCCGATCCCATGGTGGCGTACG
GCAGCTTATCCGAACTTCCATGTGGGTGAATGGAATAGATGTGGGGTCCA
GTCTTATCCACTCCACCAAGCACCAGAGCGGCACTGATATGACCCTGGTA
GCGGAAAAGCATCTGCTTCAACATCGTATTGGCGGCCACAACGCGCACCT
CACGATCTGTCTGCAAGCGATGCAGCTCCAGCTGGGAGGAGATGAGATCC
GTAGTCATCTCAGTGTCCGCAGCGGTTCCAGCTCCACAGCAGTATATGTT
TTTGGCCAGGTAATGGATCTTGGCGCAGTTCTTGTCCGAGACAATGGGTC
CCTCGGTGGCTCGCGTATCGGCGCCCAGAATAACACCCTCCTTGTAGATG
ATGCCAACGATTGTGGTTCCCGTCTTGGTGGTGGTCGGTGGCTTGAACCC
TCGATTCAAAAAATTTG
BO11011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3329-PA | 819 | Prosbeta2-RA | 74..816 | 761..19 | 3665 | 99.7 | Minus |
CG18341-PA | 924 | CG18341-RA | 157..233 | 705..629 | 185 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-RA | 1034 | CG3329-RA | 191..933 | 761..19 | 3685 | 99.7 | Minus |
Prosbeta2R1-RA | 1077 | CG18341-RA | 171..363 | 743..551 | 335 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15000645..15001218 | 592..19 | 2870 | 100 | Minus |
3L | 28110227 | 3L | 15000211..15000379 | 761..593 | 815 | 98.8 | Minus |
X | 23542271 | X | 5809181..5809299 | 743..625 | 280 | 82.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:21:23 has no hits.
BO11011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:41 Download gff for
BO11011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3329-PA | 68..819 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:09 Download gff for
BO11011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3329-PA | 68..819 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:35 Download gff for
BO11011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 185..944 | 9..767 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:07 Download gff for
BO11011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 185..944 | 9..767 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:07 Download gff for
BO11011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15000205..15000379 | 593..767 | 97 | -> | Minus |
3L | 15000645..15001229 | 9..592 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:35 Download gff for
BO11011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14993305..14993479 | 593..767 | 97 | -> | Minus |
arm_3L | 14993745..14994329 | 9..592 | 99 | | Minus |
BO11011.5prime Sequence
750 bp (576 high quality bases) assembled on 2006-04-19
> BO11011.5prime
GAAGTTATCAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCG
CTGGTTTCAATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGA
GGCTTCAAGCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCAT
CATCTACAAGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGG
GACCCATTGTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAA
AACATATACTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTAC
GGATCTCATCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTG
AGGTGCGCGTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGC
TACCAGGGTCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGAC
TGGACCCCACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGC
CGTACGCCACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAA
AGTCGCTGGAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCG
CGATGCCATCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACA
TCGATCTGTGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTAT
GAGCTGGCTAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGAA
BO11011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3329-PA | 819 | Prosbeta2-RA | 1..733 | 17..749 | 3665 | 100 | Plus |
CG18341-PA | 924 | CG18341-RA | 157..233 | 146..222 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-RA | 1034 | CG3329-RA | 118..850 | 17..749 | 3665 | 100 | Plus |
Prosbeta2R1-RA | 1077 | CG18341-RA | 171..363 | 108..300 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15000645..15001135 | 259..749 | 2455 | 100 | Plus |
3L | 28110227 | 3L | 15000199..15000379 | 78..258 | 905 | 100 | Plus |
3L | 28110227 | 3L | 15000068..15000129 | 17..78 | 310 | 100 | Plus |
X | 23542271 | X | 5809181..5809299 | 108..226 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:21:58 has no hits.
BO11011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:42 Download gff for
BO11011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3329-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:11 Download gff for
BO11011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3329-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:31:01 Download gff for
BO11011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..850 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:55 Download gff for
BO11011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..850 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:55 Download gff for
BO11011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15000068..15000129 | 17..78 | 100 | -> | Plus |
3L | 15000200..15000379 | 79..258 | 100 | -> | Plus |
3L | 15000645..15001135 | 259..750 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:31:01 Download gff for
BO11011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14993168..14993229 | 17..78 | 100 | -> | Plus |
arm_3L | 14993300..14993479 | 79..258 | 100 | -> | Plus |
arm_3L | 14993745..14994235 | 259..750 | 99 | | Plus |
BO11011.complete Sequence
850 bp assembled on 2007-10-17
GenBank Submission: FJ631955
> BO11011.complete
GAAGTTATCAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCG
CTGGTTTCAATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGA
GGCTTCAAGCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCAT
CATCTACAAGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGG
GACCCATTGTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAA
AACATATACTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTAC
GGATCTCATCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTG
AGGTGCGCGTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGC
TACCAGGGTCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGAC
TGGACCCCACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGC
CGTACGCCACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAA
AGTCGCTGGAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCG
CGATGCCATCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACA
TCGATCTGTGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTAT
GAGCTGGCTAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGAC
CGGAACCTCAACCGTGCTGCACACCAACATTAAGGACCTACTCGTCACCG
AACGCGTCCAGGCGGTGCCCATGGAGATTTCTGCAAGCTTTCTAGACCAT
BO11011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-RA | 819 | CG3329-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Prosbeta2R1-RA | 924 | CG18341-PA | 119..311 | 108..300 | 335 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-RA | 1034 | CG3329-RA | 118..933 | 17..832 | 4080 | 100 | Plus |
Prosbeta2R1-RA | 1077 | CG18341-RA | 171..363 | 108..300 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15000645..15001218 | 259..832 | 2870 | 100 | Plus |
3L | 28110227 | 3L | 15000199..15000379 | 78..258 | 905 | 100 | Plus |
3L | 28110227 | 3L | 15000068..15000129 | 17..78 | 310 | 100 | Plus |
X | 23542271 | X | 5809181..5809299 | 108..226 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:38:44 has no hits.
BO11011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:05 Download gff for
BO11011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 1..819 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:57 Download gff for
BO11011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 113..939 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:05 Download gff for
BO11011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..933 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:25 Download gff for
BO11011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 113..928 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:48 Download gff for
BO11011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..933 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:48 Download gff for
BO11011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15000068..15000129 | 17..78 | 100 | -> | Plus |
3L | 15000200..15000379 | 79..258 | 100 | -> | Plus |
3L | 15000645..15001218 | 259..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:05 Download gff for
BO11011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14993168..14993229 | 17..78 | 100 | -> | Plus |
arm_3L | 14993300..14993479 | 79..258 | 100 | -> | Plus |
arm_3L | 14993745..14994318 | 259..834 | 99 | | Plus |
BO11011.pep Sequence
Translation from 16 to 850
> BO11011.pep
MDLDNARDLPRAGFNFDNCKRNATLLNRGFKPPTTTKTGTTIVGIIYKDG
VILGADTRATEGPIVSDKNCAKIHYLAKNIYCCGAGTAADTEMTTDLISS
QLELHRLQTDREVRVVAANTMLKQMLFRYQGHISAALVLGGVDKTGPHIY
SIHPHGSSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRDAIAS
GVFNDLGSGSNIDLCVIRKGSVEYLRNYELANKKGKRQLDYRFKTGTSTV
LHTNIKDLLVTERVQAVPMEISASFLDH
BO11011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-PA | 272 | CG3329-PA | 1..272 | 1..272 | 1407 | 100 | Plus |
Prosbeta2R1-PA | 307 | CG18341-PA | 20..277 | 11..267 | 860 | 64.7 | Plus |
Prosbeta2R2-PA | 322 | CG12161-PA | 22..279 | 12..268 | 533 | 43.7 | Plus |
Prosbeta1-PA | 224 | CG8392-PA | 10..217 | 34..253 | 260 | 26.7 | Plus |
Prosbeta5-PA | 282 | CG12323-PA | 73..254 | 39..219 | 237 | 33 | Plus |