Clone BO11011 Report

Search the DGRC for BO11011

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta2-RA
Protein status:BO11011.pep: validated full length
Sequenced Size:850

Clone Sequence Records

BO11011.3prime Sequence

767 bp (625 high quality bases) assembled on 2006-04-19

> BO11011.3prime
ATGGTCTAGAAAGCTTGCAGAAATCTCCATGGGCACCGCCTGGACGCGTT
CGGTGACGAGTAGGTCCTTAATGTTGGTGTGCAGCACGGTTGAGGTTCCG
GTCTTGAAGCGGTAGTCCAACTGGCGCTTGCCCTTCTTGTTAGCCAGCTC
ATAGTTGCGCAGATACTCAACACTGCCCTTGCGGATAACACACAGATCGA
TGTTGGATCCCGAACCCAGATCGTTAAACACTCCGGAGGCGATGGCATCG
CGCACCAGTTTCTTGCCCTCCTCTTCGGACAAGTCAGGTTTCCAGCGACT
TTCGAAAACGGTCATGGCGGCCAGGGAACCCGATCCCATGGTGGCGTACG
GCAGCTTATCCGAACTTCCATGTGGGTGAATGGAATAGATGTGGGGTCCA
GTCTTATCCACTCCACCAAGCACCAGAGCGGCACTGATATGACCCTGGTA
GCGGAAAAGCATCTGCTTCAACATCGTATTGGCGGCCACAACGCGCACCT
CACGATCTGTCTGCAAGCGATGCAGCTCCAGCTGGGAGGAGATGAGATCC
GTAGTCATCTCAGTGTCCGCAGCGGTTCCAGCTCCACAGCAGTATATGTT
TTTGGCCAGGTAATGGATCTTGGCGCAGTTCTTGTCCGAGACAATGGGTC
CCTCGGTGGCTCGCGTATCGGCGCCCAGAATAACACCCTCCTTGTAGATG
ATGCCAACGATTGTGGTTCCCGTCTTGGTGGTGGTCGGTGGCTTGAACCC
TCGATTCAAAAAATTTG

BO11011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3329-PA 819 Prosbeta2-RA 74..816 761..19 3665 99.7 Minus
CG18341-PA 924 CG18341-RA 157..233 705..629 185 89.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-RA 1034 CG3329-RA 191..933 761..19 3685 99.7 Minus
Prosbeta2R1-RA 1077 CG18341-RA 171..363 743..551 335 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15000645..15001218 592..19 2870 100 Minus
3L 28110227 3L 15000211..15000379 761..593 815 98.8 Minus
X 23542271 X 5809181..5809299 743..625 280 82.4 Minus
Blast to na_te.dros performed on 2015-02-10 21:21:23 has no hits.

BO11011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:41 Download gff for BO11011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3329-PA 68..819 15..767 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:09 Download gff for BO11011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3329-PA 68..819 15..767 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:35 Download gff for BO11011.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 185..944 9..767 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:07 Download gff for BO11011.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 185..944 9..767 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:07 Download gff for BO11011.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15000205..15000379 593..767 97 -> Minus
3L 15000645..15001229 9..592 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:35 Download gff for BO11011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14993305..14993479 593..767 97 -> Minus
arm_3L 14993745..14994329 9..592 99   Minus

BO11011.5prime Sequence

750 bp (576 high quality bases) assembled on 2006-04-19

> BO11011.5prime
GAAGTTATCAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCG
CTGGTTTCAATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGA
GGCTTCAAGCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCAT
CATCTACAAGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGG
GACCCATTGTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAA
AACATATACTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTAC
GGATCTCATCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTG
AGGTGCGCGTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGC
TACCAGGGTCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGAC
TGGACCCCACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGC
CGTACGCCACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAA
AGTCGCTGGAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCG
CGATGCCATCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACA
TCGATCTGTGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTAT
GAGCTGGCTAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGAA

BO11011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3329-PA 819 Prosbeta2-RA 1..733 17..749 3665 100 Plus
CG18341-PA 924 CG18341-RA 157..233 146..222 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-RA 1034 CG3329-RA 118..850 17..749 3665 100 Plus
Prosbeta2R1-RA 1077 CG18341-RA 171..363 108..300 335 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15000645..15001135 259..749 2455 100 Plus
3L 28110227 3L 15000199..15000379 78..258 905 100 Plus
3L 28110227 3L 15000068..15000129 17..78 310 100 Plus
X 23542271 X 5809181..5809299 108..226 280 82.4 Plus
Blast to na_te.dros performed on 2015-02-11 10:21:58 has no hits.

BO11011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:42 Download gff for BO11011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3329-PA 1..732 17..748 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:11 Download gff for BO11011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3329-PA 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:31:01 Download gff for BO11011.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..850 17..750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:55 Download gff for BO11011.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..850 17..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:55 Download gff for BO11011.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15000068..15000129 17..78 100 -> Plus
3L 15000200..15000379 79..258 100 -> Plus
3L 15000645..15001135 259..750 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:31:01 Download gff for BO11011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14993168..14993229 17..78 100 -> Plus
arm_3L 14993300..14993479 79..258 100 -> Plus
arm_3L 14993745..14994235 259..750 99   Plus

BO11011.complete Sequence

850 bp assembled on 2007-10-17

GenBank Submission: FJ631955

> BO11011.complete
GAAGTTATCAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCG
CTGGTTTCAATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGA
GGCTTCAAGCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCAT
CATCTACAAGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGG
GACCCATTGTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAA
AACATATACTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTAC
GGATCTCATCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTG
AGGTGCGCGTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGC
TACCAGGGTCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGAC
TGGACCCCACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGC
CGTACGCCACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAA
AGTCGCTGGAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCG
CGATGCCATCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACA
TCGATCTGTGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTAT
GAGCTGGCTAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGAC
CGGAACCTCAACCGTGCTGCACACCAACATTAAGGACCTACTCGTCACCG
AACGCGTCCAGGCGGTGCCCATGGAGATTTCTGCAAGCTTTCTAGACCAT

BO11011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-RA 819 CG3329-PA 1..816 17..832 4080 100 Plus
Prosbeta2R1-RA 924 CG18341-PA 119..311 108..300 335 78.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-RA 1034 CG3329-RA 118..933 17..832 4080 100 Plus
Prosbeta2R1-RA 1077 CG18341-RA 171..363 108..300 335 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15000645..15001218 259..832 2870 100 Plus
3L 28110227 3L 15000199..15000379 78..258 905 100 Plus
3L 28110227 3L 15000068..15000129 17..78 310 100 Plus
X 23542271 X 5809181..5809299 108..226 280 82.4 Plus
Blast to na_te.dros performed on 2014-11-27 15:38:44 has no hits.

BO11011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:05 Download gff for BO11011.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 1..819 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:57 Download gff for BO11011.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 113..939 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:05 Download gff for BO11011.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..933 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:25 Download gff for BO11011.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 113..928 17..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:48 Download gff for BO11011.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..933 17..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:48 Download gff for BO11011.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15000068..15000129 17..78 100 -> Plus
3L 15000200..15000379 79..258 100 -> Plus
3L 15000645..15001218 259..834 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:05 Download gff for BO11011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14993168..14993229 17..78 100 -> Plus
arm_3L 14993300..14993479 79..258 100 -> Plus
arm_3L 14993745..14994318 259..834 99   Plus

BO11011.pep Sequence

Translation from 16 to 850

> BO11011.pep
MDLDNARDLPRAGFNFDNCKRNATLLNRGFKPPTTTKTGTTIVGIIYKDG
VILGADTRATEGPIVSDKNCAKIHYLAKNIYCCGAGTAADTEMTTDLISS
QLELHRLQTDREVRVVAANTMLKQMLFRYQGHISAALVLGGVDKTGPHIY
SIHPHGSSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRDAIAS
GVFNDLGSGSNIDLCVIRKGSVEYLRNYELANKKGKRQLDYRFKTGTSTV
LHTNIKDLLVTERVQAVPMEISASFLDH

BO11011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-PA 272 CG3329-PA 1..272 1..272 1407 100 Plus
Prosbeta2R1-PA 307 CG18341-PA 20..277 11..267 860 64.7 Plus
Prosbeta2R2-PA 322 CG12161-PA 22..279 12..268 533 43.7 Plus
Prosbeta1-PA 224 CG8392-PA 10..217 34..253 260 26.7 Plus
Prosbeta5-PA 282 CG12323-PA 73..254 39..219 237 33 Plus