Clone Sequence Records
BO11012.3prime Sequence
901 bp (880 high quality bases) assembled on 2006-04-19
> BO11012.3prime
ATGGTCTAGAAAGCTTGCCATGTGTGCCAGCGGCGCCATCGCCCTCAGCG
ATTGCTGATGCTGCAGGTGGTGTTGCTGCTGCTGCTGCTGCATGGTATGG
TGTTGCTGCGGGATCTGTTGGTGCTGCTGCGAAAGGTGTTGCTGCGGGAG
GTGCTGCTGCTGCTGTTGCATCGACTGGTGCTGCTGCTGCAGATCGGGCG
AGTCAGTCTGATAGTGCAGCAGGTGGCGCTGCTCATCCGGCAGATGGTAC
ATATTCATCAGGTGATTCAGCTCGCCGCCGCCGGCGGCTGCTGCCGCTGC
TGCTGCTGCTGCTGCCGCCGCTGCAGAGCTGTATTCCCGCTTCATGATGT
GATTGTTGTTGATGTTGTTGTTGTTGTTGAGCGCTATGGCACTGGGACTG
GGCGACACCGGTTCGGACTTGATGCTCGAGTCGCTGGGGCTGTGGCTCTG
GCAGGAAACCTGACCGCCACCGCCTCCACCTCCGCCGTACGGAGTCGGAC
TGCCGGGCTGCTGCTGCAAGCTACTGCCGCCATACGGCGACGGTGATCCG
GGCTGCTGGAGACTGCTGCCGTACGGCGATGTCTGTCCGCCGGACACCGT
CTGGTACATCGCATACCCGTTGTTGTACATGTGTCCCATGTCGTACCGCT
GCGCCGCGTAGTGCTGGCCCATGTAGGAGGTCTGATAGGCTGCCGCTCCG
GCCGGATCTGCGTGCATCATGTAGCCATTGGGCATGTATCCATTGGGCGC
GTTCATCTGGTACATATCCTGGCGCGCCTGTTGCGCTGCCGCTGCTGCCG
CCGCCGCTGCCGCTGCTGCACTGCCTCCACTACCGTTTAGCGACTGGTTC
TGGCCAGGCTGACCTTGCACCCGCGTGGGCGTCACCGGCTCACCCGGTGC
T
BO11012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18024-PA | 1719 | SoxN-RA | 834..1716 | 901..19 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SoxN-RB | 4026 | CG18024-RB | 1683..2565 | 901..19 | 4415 | 100 | Minus |
| SoxN-RA | 4026 | CG18024-RA | 1683..2565 | 901..19 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8827327..8828209 | 901..19 | 4415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:53:09 has no hits.
BO11012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:43 Download gff for
BO11012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-PA | 834..1719 | 16..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:12 Download gff for
BO11012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18024-PA | 834..1719 | 16..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:37:44 Download gff for
BO11012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 1683..2565 | 19..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:58:51 Download gff for
BO11012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 1683..2565 | 19..901 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:58:51 Download gff for
BO11012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8827327..8828209 | 19..901 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:37:44 Download gff for
BO11012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8827327..8828209 | 19..901 | 100 | | Minus |
BO11012.5prime Sequence
898 bp (736 high quality bases) assembled on 2006-04-19
> BO11012.5prime
GAAGTTATCAGTCGACATGCTGACCATGGAATCGGATATGAAAGGCAGCC
TGCTGCATGCCACCATGCCGCCGCATCACACAAGTGCCGCGTTGCACGGA
CATGCGGCATCGCCGTACTCCGCCCTAGCTCCCCTTATGAACCTGGGCCA
GTCGCACCTGACCCACTCGCAGCTGAGCCATCACAACCACCATCATCACC
ACATGAGCGCCCATATCGCGGCCAGCCAGAGTCCCAATCCGCTGAGCTCG
CTGCAGTCCTCGATGGCGAACACCCTCAATGGCAGCCAGGTGGGGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGAGCTCCCCGCTGCACAGCTCCAGCG
AATTGAGTCCCACCCAGAGCAGCATCGGAAGCCATCACATGACATCGCCG
GTCAGCCACCAGCAGCACACGCAACAGCAGCAGCACGGGCAGCAGCAGCA
TCTGGGCGCGGGATCTGCATTGAGCAGCCTAACTGGAGGATCCAGCAACA
ACAACAACAACAGCGCCACGGCCAACAAGAACCAACAGCACGCGGATCGT
GTGAAGCGGCCTATGAATGCGTTCATGGTTTGGTCACGGGGCCAGCGGAG
GAAGATGGCCTCGGACAACCCCAAGATGCACAACTCGGAGATCTCGAAGC
GACTGGGCGCCCAGTGGAAGGACCTCTCGGAATCGGAGAAGCGACCGTTC
ATCGACGAGGCCAAGCGCCTGAGGGCGGTGCACATGAAGGAGCATCCGGA
CTACAAGTACCGGCCGCGCCGCAAGACTAAAACGCTGACAAAGACCAAGG
AGAAGTACCCAATGGGCGGCCTGATGCCCGGACAGACGGTGGGCGGCGGA
GCACCGGGTGAGCCGGTGACGCCCACGCGGGGTGCAGGTCAGCCTGGC
BO11012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18024-PA | 1719 | SoxN-RA | 1..865 | 17..881 | 4300 | 99.8 | Plus |
| CG5893-PA | 1149 | D-RA | 556..648 | 683..775 | 265 | 91.3 | Plus |
| CG5893-PA | 1149 | D-RA | 490..543 | 617..670 | 145 | 90.7 | Plus |
| CG15552-PA | 1590 | Sox100B-RA | 416..454 | 738..776 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SoxN-RB | 4026 | CG18024-RB | 850..1731 | 17..898 | 4350 | 99.7 | Plus |
| SoxN-RA | 4026 | CG18024-RA | 850..1731 | 17..898 | 4350 | 99.7 | Plus |
| D-RD | 2619 | CG5893-RD | 1633..1854 | 554..775 | 555 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8826494..8827375 | 17..898 | 4335 | 99.4 | Plus |
| 3L | 28110227 | 3L | 14176691..14176912 | 775..554 | 555 | 83.3 | Minus |
| 3L | 28110227 | 3L | 14106554..14106711 | 711..554 | 250 | 77.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:40:14 has no hits.
BO11012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:44 Download gff for
BO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:14 Download gff for
BO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18024-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:46 Download gff for
BO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 850..1731 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:25 Download gff for
BO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 850..1731 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:25 Download gff for
BO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8826494..8827375 | 17..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:46 Download gff for
BO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8826494..8827375 | 17..898 | 99 | | Plus |
BO11012.complete Sequence
1750 bp assembled on 2007-11-02
GenBank Submission: FJ631956
> BO11012.complete
GAAGTTATCAGTCGACATGCTGACCATGGAATCGGATATGAAAGGCAGCC
TGCTGCATGCCACCATGCCGCCGCATCACACAAGTGCCGCGTTGCACGGA
CATGCGGCATCGCCGTACTCCGCCCTAGCTCCCCTTATGAACCTGGGCCA
GTCGCACCTGACCCACTCGCAGCTGAGCCATCACAACCACCATCATCACC
ACATGAGCGCCCATATCGCGGCCAGCCAGAGTCCCAATCCGCTGAGCTCG
CTGCAGTCCTCGATGGCGAACACCCTCAATGGCAGCCAGGTGGGGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGAGCTCCCCGCTGCACAGCTCCAGCG
AATTGAGTCCCACCCAGAGCAGCATCGGAAGCCATCACATGACATCGCCG
GTCAGCCACCAGCAGCACACGCAACAGCAGCAGCACGGGCAGCAGCAGCA
TCTGGGCGCGGGATCTGCATTGAGCAGCCTAACTGGAGGATCCAGCAACA
ACAACAACAACAGCGCCACGGCCAACAAGAACCAACAGCACGCGGATCGT
GTGAAGCGGCCTATGAATGCGTTCATGGTTTGGTCACGGGGCCAGCGGAG
GAAGATGGCCTCGGACAACCCCAAGATGCACAACTCGGAGATCTCGAAGC
GACTGGGCGCCCAGTGGAAGGACCTCTCGGAATCGGAGAAGCGACCGTTC
ATCGACGAGGCCAAGCGCCTGAGGGCGGTGCACATGAAGGAGCATCCGGA
CTACAAGTACCGGCCGCGCCGCAAGACTAAAACGCTGACCAAGACCAAGG
AGAAGTACCCAATGGGCGGCCTGATGCCCGGACAGACGGTGGGCGGCGGA
GCACCGGGTGAGCCGGTGACGCCCACGCGGGTGCAAGGTCAGCCTGGCCA
GAACCAGTCGCTAAACGGTAGTGGAGGCAGTGCAGCAGCGGCAGCGGCGG
CGGCAGCAGCGGCAGCGCAACAGGCGCGCCAGGATATGTACCAGATGAAC
GCGCCCAATGGATACATGCCCAATGGCTACATGATGCACGCAGATCCGGC
CGGAGCGGCAGCCTATCAGACCTCCTACATGGGCCAGCACTACGCGGCGC
AGCGGTACGACATGGGACACATGTACAACAACGGGTATGCGATGTACCAG
ACGGTGTCCGGCGGACAGACATCGCCGTACGGCAGCAGTCTCCAGCAGCC
CGGATCACCGTCGCCGTATGGCGGCAGTAGCTTGCAGCAGCAGCCCGGCA
GTCCGACTCCGTACGGCGGAGGTGGAGGCGGTGGCGGTCAGGTTTCCTGC
CAGAGCCACAGCCCCAGCGACTCGAGCATCAAGTCCGAACCGGTGTCGCC
CAGTCCCAGTGCCATAGCGCTCAACAACAACAACAACATCAACAACAATC
ACATCATGAAGCGGGAATACAGCTCTGCAGCGGCGGCAGCAGCAGCAGCA
GCAGCGGCAGCAGCCGCCGGCGGCGGCGAGCTGAATCACCTGATGAATAT
GTACCATCTGCCGGATGAGCAGCGCCACCTGCTGCACTATCAGACTGACT
CGCCCGATCTGCAGCAGCAGCACCAGTCGATGCAACAGCAGCAGCAGCAC
CTCCCGCAGCAACACCTTTCGCAGCAGCACCAACAGATCCCGCAGCAACA
CCATACCATGCAGCAGCAGCAGCAGCAACACCACCTGCAGCATCAGCAAT
CGCTGAGGGCGATGGCGCCGCTGGCACACATGGCAAGCTTTCTAGACCAT
BO11012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SoxN-RB | 2286 | CG18024-PB | 1..1716 | 17..1732 | 8580 | 100 | Plus |
| SoxN-RA | 1719 | CG18024-PA | 1..1716 | 17..1732 | 8580 | 100 | Plus |
| D-RD | 1149 | CG5893-PD | 427..648 | 554..775 | 555 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SoxN-RB | 4026 | CG18024-RB | 850..2565 | 17..1732 | 8580 | 100 | Plus |
| SoxN-RA | 4026 | CG18024-RA | 850..2565 | 17..1732 | 8580 | 100 | Plus |
| D-RD | 2619 | CG5893-RD | 1633..1854 | 554..775 | 555 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8826494..8828209 | 17..1732 | 8580 | 100 | Plus |
| 3L | 28110227 | 3L | 14176691..14176912 | 775..554 | 555 | 83.3 | Minus |
| 3L | 28110227 | 3L | 14106554..14106711 | 711..554 | 250 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:39:22 has no hits.
BO11012.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:06 Download gff for
BO11012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 1..1719 | 17..1735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:58 Download gff for
BO11012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 870..2585 | 17..1732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:04 Download gff for
BO11012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 850..2565 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:57 Download gff for
BO11012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 870..2585 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:46 Download gff for
BO11012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 850..2565 | 17..1734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:46 Download gff for
BO11012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8826494..8828209 | 17..1734 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:04 Download gff for
BO11012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8826494..8828209 | 17..1734 | 99 | | Plus |
BO11012.pep Sequence
Translation from 16 to 1750
> BO11012.pep
MLTMESDMKGSLLHATMPPHHTSAALHGHAASPYSALAPLMNLGQSHLTH
SQLSHHNHHHHHMSAHIAASQSPNPLSSLQSSMANTLNGSQVGQQQQQQQ
QQQSSPLHSSSELSPTQSSIGSHHMTSPVSHQQHTQQQQHGQQQHLGAGS
ALSSLTGGSSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASD
NPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRP
RRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLN
GSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAY
QTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSP
YGGSSLQQQPGSPTPYGGGGGGGGQVSCQSHSPSDSSIKSEPVSPSPSAI
ALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLPD
EQRHLLHYQTDSPDLQQQHQSMQQQQQHLPQQHLSQQHQQIPQQHHTMQQ
QQQQHHLQHQQSLRAMAPLAHMASFLDH
BO11012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SoxN-PB | 761 | CG18024-PB | 1..572 | 1..572 | 3037 | 100 | Plus |
| SoxN-PA | 572 | CG18024-PA | 1..572 | 1..572 | 3037 | 100 | Plus |
| Sox21b-PB | 571 | CG32139-PB | 70..554 | 45..487 | 519 | 32.3 | Plus |
| Sox21b-PA | 571 | CG32139-PA | 70..554 | 45..487 | 519 | 32.3 | Plus |
| Sox21b-PC | 587 | CG32139-PC | 70..554 | 45..487 | 519 | 32.3 | Plus |
| SoxN-PB | 761 | CG18024-PB | 441..760 | 282..574 | 191 | 27.2 | Plus |
