Clone Sequence Records
BO11013.3prime Sequence
888 bp (822 high quality bases) assembled on 2006-04-19
> BO11013.3prime
ATGGTCTAGAAAGCTTGCCCTCCAACCACTGTCGTATTTTTGCTCGTCGG
GCTTGGGATGATGTCGCACTATGTGAATGATGCGACCGGGCGGATATAAG
GGCTGGTGCAGAGTTAAAGCTATCGAGCTGTCCGTCGGATGAGCGCTGGT
CGAACGGGCAGTGCCACGCTCCTCCTGGTACTGATTGATGTGCGTGTCCT
GGCCGGACATGTTGACCACGGAAGTGGGTTCGGGTCCACAGCCACAGCAG
ATGACCGAGCAGGAAATGGTCTTCCACTTGGGATCCACGCTGCGCTGAAT
GGCATTGATAAGGTCCGCTCGCAGGGCCTCCATTTGATTGAGACCGATGC
GCGGCACTACATCCTTGCCCAGCACCACCGAGGTGATGAACGACTTTGAG
TACTCCACGGCTGGCATACTGAGCAGACCTCCTGGCGGAGAGTAACTGAA
GCACTGGAGCGTTGGATGCTCGGGCTTAAGGAGAATGGCGAGTATGGCCG
CTGTTCCGGCGCCCAGCGAATGGCCCACCAGCACCAGATCAAAGGTGTGC
GTCTGACGGTCCGGATTCCGTTGCAGTGCCCTCTCGATGAGATTCTCCTC
CTGCAGCTTGTTGCGTATGTAGATCGCCGCTTGCACCATTCCCTTGTGGC
CCAGCCAATCGTCACGCGGCGGCTGCAGCGGCAGAACTTCGCCCTCGGCG
TTCAGATCCGTAAGTATGTCCTTCATGCTAAGGGTACCACGTATGCTGAT
CACAACCGCCCGATGTGTATAGTCGATGGCCACAAAGAAGGGCGTCTCGC
CCACATCCACGTGATAGGTGGCGTAAACGATATCGATGTCGCCCAGCTGG
AGCGTCTTCTTCAGCGCTGCATAGTTGCACAGGCAGCA
BO11013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33174-PA | 1935 | CG33174-RA | 1063..1932 | 888..19 | 4350 | 100 | Minus |
CG33174-PD | 2214 | CG33174-RD | 1063..1931 | 888..20 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-RA | 4004 | CG33174-RA | 1872..2741 | 888..19 | 4350 | 100 | Minus |
inaE-RF | 5698 | CG33174-RF | 1872..2740 | 888..20 | 4345 | 100 | Minus |
inaE-RE | 5086 | CG33174-RE | 1872..2740 | 888..20 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13803381..13803850 | 888..419 | 2350 | 100 | Minus |
X | 23542271 | X | 13803905..13804050 | 422..277 | 730 | 100 | Minus |
X | 23542271 | X | 13804292..13804422 | 173..43 | 655 | 100 | Minus |
X | 23542271 | X | 13804121..13804228 | 278..171 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:31:11 has no hits.
BO11013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:45 Download gff for
BO11013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-PA | 1064..1935 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:16 Download gff for
BO11013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-PA | 1064..1935 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:57:26 Download gff for
BO11013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 1873..2746 | 13..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:37 Download gff for
BO11013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 1873..2746 | 13..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:37 Download gff for
BO11013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13803382..13803850 | 419..887 | 100 | -> | Minus |
X | 13803909..13804050 | 277..418 | 100 | -> | Minus |
X | 13804123..13804227 | 172..276 | 100 | -> | Minus |
X | 13804294..13804421 | 44..171 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:57:26 Download gff for
BO11013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13697415..13697883 | 419..887 | 100 | -> | Minus |
arm_X | 13697942..13698083 | 277..418 | 100 | -> | Minus |
arm_X | 13698156..13698260 | 172..276 | 100 | -> | Minus |
arm_X | 13698327..13698454 | 44..171 | 100 | -> | Minus |
BO11013.5prime Sequence
824 bp (780 high quality bases) assembled on 2006-04-19
> BO11013.5prime
GAAGTTATCAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGT
CTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATT
CATTTTATATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTA
TAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCT
ACTTGTTGATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTG
ATCTCGATGCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAA
CATTTGGATATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGC
TGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATC
GATGATCCCAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCT
GGTGGTGATCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAA
GATCCTGGGTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAG
TCTCGGTTTAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACA
AAGGAAAGTGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCC
TGCTATTCTGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACG
GACATCGCCCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCC
GTCGGATGTGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCG
AACGCGAGGCCATTGTGAGGCAGC
BO11013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33174-PD | 2214 | CG33174-RD | 1..808 | 17..824 | 4040 | 100 | Plus |
CG33174-PA | 1935 | CG33174-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-RF | 5698 | CG33174-RF | 810..1617 | 17..824 | 4040 | 100 | Plus |
inaE-RE | 5086 | CG33174-RE | 810..1617 | 17..824 | 4040 | 100 | Plus |
inaE-RA | 4004 | CG33174-RA | 810..1617 | 17..824 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13802846..13803068 | 602..824 | 1115 | 100 | Plus |
X | 23542271 | X | 13802590..13802770 | 424..604 | 905 | 100 | Plus |
X | 23542271 | X | 13801901..13802008 | 111..218 | 540 | 100 | Plus |
X | 23542271 | X | 13802067..13802171 | 219..323 | 525 | 100 | Plus |
X | 23542271 | X | 13802237..13802338 | 324..425 | 510 | 100 | Plus |
X | 23542271 | X | 13801679..13801773 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:43:18 has no hits.
BO11013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:45 Download gff for
BO11013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:17 Download gff for
BO11013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:01 Download gff for
BO11013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 808..1617 | 13..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:12 Download gff for
BO11013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 808..1617 | 13..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:12 Download gff for
BO11013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13802848..13803068 | 604..824 | 100 | | Plus |
X | 13801675..13801773 | 12..111 | 98 | -> | Plus |
X | 13801902..13802008 | 112..218 | 100 | -> | Plus |
X | 13802067..13802171 | 219..323 | 100 | -> | Plus |
X | 13802237..13802338 | 324..425 | 100 | -> | Plus |
X | 13802592..13802769 | 426..603 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:01 Download gff for
BO11013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13695708..13695806 | 12..111 | 98 | -> | Plus |
arm_X | 13695935..13696041 | 112..218 | 100 | -> | Plus |
arm_X | 13696100..13696204 | 219..323 | 100 | -> | Plus |
arm_X | 13696270..13696371 | 324..425 | 100 | -> | Plus |
arm_X | 13696625..13696802 | 426..603 | 100 | -> | Plus |
arm_X | 13696881..13697101 | 604..824 | 100 | | Plus |
BO11013.complete Sequence
1966 bp assembled on 2008-01-16
GenBank Submission: FJ631957
> BO11013.complete
GAAGTTATCAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGT
CTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATT
CATTTTATATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTA
TAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCT
ACTTGTTGATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTG
ATCTCGATGCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAA
CATTTGGATATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGC
TGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATC
GATGATCCCAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCT
GGTGGTGATCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAA
GATCCTGGGTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAG
TCTCGGTTTAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACA
AAGGAAAGTGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCC
TGCTATTCTGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACG
GACATCGCCCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCC
GTCGGATGTGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCG
AACGCGAGGCCATTGTGAGGCAGCGCAAAAATGGCACCTATGAGTTCCTC
AGCGGCGTACCGATTACGGAGCGAACCCAGTTCCTAGCACTCAACGATGC
CAAAAACTATGACTTCTTTCAAACGGTCATCCACTATATGTACTTTGCCC
AGGGAGCCTACGGTTGGCCCATGTACGTCATCATCAATCGCAGCAAGATG
TGGCATTTGGTGCCGGAACTGAAATGCTTTGGCTGCTGTTGCGGTACAAG
TGATGATACAGAGGTTATCCAGGACAATTGCTGCCTGTGCAACTATGCAG
CGCTGAAGAAGACGCTCCAGCTGGGCGACATCGATATCGTTTACGCCACC
TATCACGTGGATGTGGGCGAGACGCCCTTCTTTGTGGCCATCGACTATAC
ACATCGGGCGGTTGTGATCAGCATACGTGGTACCCTTAGCATGAAGGACA
TACTTACGGATCTGAACGCCGAGGGCGAAGTTCTGCCGCTGCAGCCGCCG
CGTGACGATTGGCTGGGCCACAAGGGAATGGTGCAAGCGGCGATCTACAT
ACGCAACAAGCTGCAGGAGGAGAATCTCATCGAGAGGGCACTGCAACGGA
ATCCGGACCGTCAGACGCACACCTTTGATCTGGTGCTGGTGGGCCATTCG
CTGGGCGCCGGAACAGCGGCCATACTCGCCATTCTCCTTAAGCCCGAGCA
TCCAACGCTCCAGTGCTTCAGTTACTCTCCGCCAGGAGGTCTGCTCAGTA
TGCCAGCCGTGGAGTACTCAAAGTCGTTCATCACCTCGGTGGTGCTGGGC
AAGGATGTAGTGCCGCGCATCGGTCTCAATCAAATGGAGGCCCTGCGAGC
GGACCTTATCAATGCCATTCAGCGCAGCGTGGATCCCAAGTGGAAGACCA
TTTCCTGCTCGGTCATCTGCTGTGGCTGTGGACCCGAACCCACTTCCGTG
GTCAACATGTCCGGCCAGGACACGCACATCAATCAGTACCAGGAGGAGCG
TGGCACTGCCCGTTCGACCAGCGCTCATCCGACGGACAGCTCGATAGCTT
TAACTCTGCACCAGCCCTTATATCCGCCCGGTCGCATCATTCACATAGTG
CGACATCATCCCAAGCCCGACGAGCAAAAATACGACAGTGGTTGGAGGGC
AAGCTTTCTAGACCAT
BO11013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-RA | 1935 | CG33174-PA | 1..1932 | 17..1948 | 9660 | 100 | Plus |
inaE-RF | 2448 | CG33174-PF | 1..1931 | 17..1947 | 9655 | 100 | Plus |
inaE-RE | 3957 | CG33174-PE | 1..1931 | 17..1947 | 9655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-RA | 4004 | CG33174-RA | 810..2741 | 17..1948 | 9660 | 100 | Plus |
inaE-RF | 5698 | CG33174-RF | 810..2740 | 17..1947 | 9655 | 100 | Plus |
inaE-RE | 5086 | CG33174-RE | 810..2740 | 17..1947 | 9655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13803326..13803850 | 1024..1548 | 2625 | 100 | Plus |
X | 23542271 | X | 13802846..13803267 | 602..1023 | 2110 | 100 | Plus |
X | 23542271 | X | 13802590..13802770 | 424..604 | 905 | 100 | Plus |
X | 23542271 | X | 13803905..13804050 | 1545..1690 | 730 | 100 | Plus |
X | 23542271 | X | 13804292..13804422 | 1794..1924 | 655 | 100 | Plus |
X | 23542271 | X | 13804121..13804228 | 1689..1796 | 540 | 100 | Plus |
X | 23542271 | X | 13801901..13802008 | 111..218 | 540 | 100 | Plus |
X | 23542271 | X | 13802067..13802171 | 219..323 | 525 | 100 | Plus |
X | 23542271 | X | 13802237..13802338 | 324..425 | 510 | 100 | Plus |
X | 23542271 | X | 13801679..13801773 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:44:01 has no hits.
BO11013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:09 Download gff for
BO11013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-RA | 1..1935 | 17..1949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:12 Download gff for
BO11013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-RA | 688..2619 | 17..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:26 Download gff for
BO11013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 810..2741 | 17..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:09 Download gff for
BO11013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-RA | 686..2624 | 13..1954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:09 Download gff for
BO11013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 810..2741 | 17..1950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:09 Download gff for
BO11013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13801679..13801773 | 17..111 | 100 | -> | Plus |
X | 13801902..13802008 | 112..218 | 100 | -> | Plus |
X | 13802067..13802171 | 219..323 | 100 | -> | Plus |
X | 13802237..13802338 | 324..425 | 100 | -> | Plus |
X | 13802592..13802769 | 426..603 | 100 | -> | Plus |
X | 13802848..13803267 | 604..1023 | 100 | -> | Plus |
X | 13803326..13803850 | 1024..1548 | 100 | -> | Plus |
X | 13803909..13804050 | 1549..1690 | 100 | -> | Plus |
X | 13804123..13804227 | 1691..1795 | 100 | -> | Plus |
X | 13804294..13804421 | 1796..1923 | 100 | -> | Plus |
X | 13805452..13805476 | 1924..1950 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:26 Download gff for
BO11013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13695712..13695806 | 17..111 | 100 | -> | Plus |
arm_X | 13695935..13696041 | 112..218 | 100 | -> | Plus |
arm_X | 13696100..13696204 | 219..323 | 100 | -> | Plus |
arm_X | 13696270..13696371 | 324..425 | 100 | -> | Plus |
arm_X | 13696625..13696802 | 426..603 | 100 | -> | Plus |
arm_X | 13696881..13697300 | 604..1023 | 100 | -> | Plus |
arm_X | 13697359..13697883 | 1024..1548 | 100 | -> | Plus |
arm_X | 13697942..13698083 | 1549..1690 | 100 | -> | Plus |
arm_X | 13698156..13698260 | 1691..1795 | 100 | -> | Plus |
arm_X | 13698327..13698454 | 1796..1923 | 100 | -> | Plus |
arm_X | 13699485..13699509 | 1924..1950 | 92 | | Plus |
BO11013.pep Sequence
Translation from 16 to 1966
> BO11013.pep
MPGLVVFRRRWSVGSDDLVVPGAFLLTIHFICFVIVSVSLVIFEYNTRIL
SVKLLFYHLIGYLLILFFSICVEIGICVISMRGSILDAEARTSINIWIYL
KSLVILFDIAWLAVGSVWLGHYYTTAPIDDPKKVYIAIIICNWALVVITL
ITIWCTFDAAGRSWVKMKKYQRSMRETESRFNYKRSNSMNRNWRQRKVMR
AYQDSWDHRCRLLFCCMGSSERNRNSFTDIARLLSDFFRELDVVPSDVVA
GLVLLRKFQRLEREAIVRQRKNGTYEFLSGVPITERTQFLALNDAKNYDF
FQTVIHYMYFAQGAYGWPMYVIINRSKMWHLVPELKCFGCCCGTSDDTEV
IQDNCCLCNYAALKKTLQLGDIDIVYATYHVDVGETPFFVAIDYTHRAVV
ISIRGTLSMKDILTDLNAEGEVLPLQPPRDDWLGHKGMVQAAIYIRNKLQ
EENLIERALQRNPDRQTHTFDLVLVGHSLGAGTAAILAILLKPEHPTLQC
FSYSPPGGLLSMPAVEYSKSFITSVVLGKDVVPRIGLNQMEALRADLINA
IQRSVDPKWKTISCSVICCGCGPEPTSVVNMSGQDTHINQYQEERGTARS
TSAHPTDSSIALTLHQPLYPPGRIIHIVRHHPKPDEQKYDSGWRASFLDH
BO11013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-PF | 815 | CG33174-PF | 1..644 | 1..644 | 3417 | 100 | Plus |
inaE-PE | 1318 | CG33174-PE | 1..644 | 1..644 | 3417 | 100 | Plus |
inaE-PA | 644 | CG33174-PA | 1..644 | 1..644 | 3417 | 100 | Plus |
inaE-PD | 737 | CG33174-PD | 1..644 | 1..644 | 3417 | 100 | Plus |
inaE-PH | 729 | CG33174-PH | 1..636 | 1..636 | 3368 | 100 | Plus |