Clone BO11013 Report

Search the DGRC for BO11013

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptinaE-RA
Protein status:BO11013.pep:
Sequenced Size:1966

Clone Sequence Records

BO11013.3prime Sequence

888 bp (822 high quality bases) assembled on 2006-04-19

> BO11013.3prime
ATGGTCTAGAAAGCTTGCCCTCCAACCACTGTCGTATTTTTGCTCGTCGG
GCTTGGGATGATGTCGCACTATGTGAATGATGCGACCGGGCGGATATAAG
GGCTGGTGCAGAGTTAAAGCTATCGAGCTGTCCGTCGGATGAGCGCTGGT
CGAACGGGCAGTGCCACGCTCCTCCTGGTACTGATTGATGTGCGTGTCCT
GGCCGGACATGTTGACCACGGAAGTGGGTTCGGGTCCACAGCCACAGCAG
ATGACCGAGCAGGAAATGGTCTTCCACTTGGGATCCACGCTGCGCTGAAT
GGCATTGATAAGGTCCGCTCGCAGGGCCTCCATTTGATTGAGACCGATGC
GCGGCACTACATCCTTGCCCAGCACCACCGAGGTGATGAACGACTTTGAG
TACTCCACGGCTGGCATACTGAGCAGACCTCCTGGCGGAGAGTAACTGAA
GCACTGGAGCGTTGGATGCTCGGGCTTAAGGAGAATGGCGAGTATGGCCG
CTGTTCCGGCGCCCAGCGAATGGCCCACCAGCACCAGATCAAAGGTGTGC
GTCTGACGGTCCGGATTCCGTTGCAGTGCCCTCTCGATGAGATTCTCCTC
CTGCAGCTTGTTGCGTATGTAGATCGCCGCTTGCACCATTCCCTTGTGGC
CCAGCCAATCGTCACGCGGCGGCTGCAGCGGCAGAACTTCGCCCTCGGCG
TTCAGATCCGTAAGTATGTCCTTCATGCTAAGGGTACCACGTATGCTGAT
CACAACCGCCCGATGTGTATAGTCGATGGCCACAAAGAAGGGCGTCTCGC
CCACATCCACGTGATAGGTGGCGTAAACGATATCGATGTCGCCCAGCTGG
AGCGTCTTCTTCAGCGCTGCATAGTTGCACAGGCAGCA

BO11013.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33174-PA 1935 CG33174-RA 1063..1932 888..19 4350 100 Minus
CG33174-PD 2214 CG33174-RD 1063..1931 888..20 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-RA 4004 CG33174-RA 1872..2741 888..19 4350 100 Minus
inaE-RF 5698 CG33174-RF 1872..2740 888..20 4345 100 Minus
inaE-RE 5086 CG33174-RE 1872..2740 888..20 4345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13803381..13803850 888..419 2350 100 Minus
X 23542271 X 13803905..13804050 422..277 730 100 Minus
X 23542271 X 13804292..13804422 173..43 655 100 Minus
X 23542271 X 13804121..13804228 278..171 540 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:31:11 has no hits.

BO11013.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:45 Download gff for BO11013.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33174-PA 1064..1935 18..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:16 Download gff for BO11013.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33174-PA 1064..1935 18..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:57:26 Download gff for BO11013.3prime
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 1873..2746 13..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:37 Download gff for BO11013.3prime
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 1873..2746 13..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:37 Download gff for BO11013.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13803382..13803850 419..887 100 -> Minus
X 13803909..13804050 277..418 100 -> Minus
X 13804123..13804227 172..276 100 -> Minus
X 13804294..13804421 44..171 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:57:26 Download gff for BO11013.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13697415..13697883 419..887 100 -> Minus
arm_X 13697942..13698083 277..418 100 -> Minus
arm_X 13698156..13698260 172..276 100 -> Minus
arm_X 13698327..13698454 44..171 100 -> Minus

BO11013.5prime Sequence

824 bp (780 high quality bases) assembled on 2006-04-19

> BO11013.5prime
GAAGTTATCAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGT
CTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATT
CATTTTATATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTA
TAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCT
ACTTGTTGATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTG
ATCTCGATGCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAA
CATTTGGATATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGC
TGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATC
GATGATCCCAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCT
GGTGGTGATCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAA
GATCCTGGGTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAG
TCTCGGTTTAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACA
AAGGAAAGTGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCC
TGCTATTCTGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACG
GACATCGCCCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCC
GTCGGATGTGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCG
AACGCGAGGCCATTGTGAGGCAGC

BO11013.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33174-PD 2214 CG33174-RD 1..808 17..824 4040 100 Plus
CG33174-PA 1935 CG33174-RA 1..808 17..824 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-RF 5698 CG33174-RF 810..1617 17..824 4040 100 Plus
inaE-RE 5086 CG33174-RE 810..1617 17..824 4040 100 Plus
inaE-RA 4004 CG33174-RA 810..1617 17..824 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13802846..13803068 602..824 1115 100 Plus
X 23542271 X 13802590..13802770 424..604 905 100 Plus
X 23542271 X 13801901..13802008 111..218 540 100 Plus
X 23542271 X 13802067..13802171 219..323 525 100 Plus
X 23542271 X 13802237..13802338 324..425 510 100 Plus
X 23542271 X 13801679..13801773 17..111 475 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:43:18 has no hits.

BO11013.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:55:45 Download gff for BO11013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33174-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:17 Download gff for BO11013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33174-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:01 Download gff for BO11013.5prime
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 808..1617 13..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:12 Download gff for BO11013.5prime
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 808..1617 13..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:12 Download gff for BO11013.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13802848..13803068 604..824 100   Plus
X 13801675..13801773 12..111 98 -> Plus
X 13801902..13802008 112..218 100 -> Plus
X 13802067..13802171 219..323 100 -> Plus
X 13802237..13802338 324..425 100 -> Plus
X 13802592..13802769 426..603 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:01 Download gff for BO11013.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13695708..13695806 12..111 98 -> Plus
arm_X 13695935..13696041 112..218 100 -> Plus
arm_X 13696100..13696204 219..323 100 -> Plus
arm_X 13696270..13696371 324..425 100 -> Plus
arm_X 13696625..13696802 426..603 100 -> Plus
arm_X 13696881..13697101 604..824 100   Plus

BO11013.complete Sequence

1966 bp assembled on 2008-01-16

GenBank Submission: FJ631957

> BO11013.complete
GAAGTTATCAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGT
CTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATT
CATTTTATATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTA
TAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCT
ACTTGTTGATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTG
ATCTCGATGCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAA
CATTTGGATATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGC
TGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATC
GATGATCCCAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCT
GGTGGTGATCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAA
GATCCTGGGTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAG
TCTCGGTTTAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACA
AAGGAAAGTGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCC
TGCTATTCTGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACG
GACATCGCCCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCC
GTCGGATGTGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCG
AACGCGAGGCCATTGTGAGGCAGCGCAAAAATGGCACCTATGAGTTCCTC
AGCGGCGTACCGATTACGGAGCGAACCCAGTTCCTAGCACTCAACGATGC
CAAAAACTATGACTTCTTTCAAACGGTCATCCACTATATGTACTTTGCCC
AGGGAGCCTACGGTTGGCCCATGTACGTCATCATCAATCGCAGCAAGATG
TGGCATTTGGTGCCGGAACTGAAATGCTTTGGCTGCTGTTGCGGTACAAG
TGATGATACAGAGGTTATCCAGGACAATTGCTGCCTGTGCAACTATGCAG
CGCTGAAGAAGACGCTCCAGCTGGGCGACATCGATATCGTTTACGCCACC
TATCACGTGGATGTGGGCGAGACGCCCTTCTTTGTGGCCATCGACTATAC
ACATCGGGCGGTTGTGATCAGCATACGTGGTACCCTTAGCATGAAGGACA
TACTTACGGATCTGAACGCCGAGGGCGAAGTTCTGCCGCTGCAGCCGCCG
CGTGACGATTGGCTGGGCCACAAGGGAATGGTGCAAGCGGCGATCTACAT
ACGCAACAAGCTGCAGGAGGAGAATCTCATCGAGAGGGCACTGCAACGGA
ATCCGGACCGTCAGACGCACACCTTTGATCTGGTGCTGGTGGGCCATTCG
CTGGGCGCCGGAACAGCGGCCATACTCGCCATTCTCCTTAAGCCCGAGCA
TCCAACGCTCCAGTGCTTCAGTTACTCTCCGCCAGGAGGTCTGCTCAGTA
TGCCAGCCGTGGAGTACTCAAAGTCGTTCATCACCTCGGTGGTGCTGGGC
AAGGATGTAGTGCCGCGCATCGGTCTCAATCAAATGGAGGCCCTGCGAGC
GGACCTTATCAATGCCATTCAGCGCAGCGTGGATCCCAAGTGGAAGACCA
TTTCCTGCTCGGTCATCTGCTGTGGCTGTGGACCCGAACCCACTTCCGTG
GTCAACATGTCCGGCCAGGACACGCACATCAATCAGTACCAGGAGGAGCG
TGGCACTGCCCGTTCGACCAGCGCTCATCCGACGGACAGCTCGATAGCTT
TAACTCTGCACCAGCCCTTATATCCGCCCGGTCGCATCATTCACATAGTG
CGACATCATCCCAAGCCCGACGAGCAAAAATACGACAGTGGTTGGAGGGC
AAGCTTTCTAGACCAT

BO11013.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-RA 1935 CG33174-PA 1..1932 17..1948 9660 100 Plus
inaE-RF 2448 CG33174-PF 1..1931 17..1947 9655 100 Plus
inaE-RE 3957 CG33174-PE 1..1931 17..1947 9655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-RA 4004 CG33174-RA 810..2741 17..1948 9660 100 Plus
inaE-RF 5698 CG33174-RF 810..2740 17..1947 9655 100 Plus
inaE-RE 5086 CG33174-RE 810..2740 17..1947 9655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13803326..13803850 1024..1548 2625 100 Plus
X 23542271 X 13802846..13803267 602..1023 2110 100 Plus
X 23542271 X 13802590..13802770 424..604 905 100 Plus
X 23542271 X 13803905..13804050 1545..1690 730 100 Plus
X 23542271 X 13804292..13804422 1794..1924 655 100 Plus
X 23542271 X 13804121..13804228 1689..1796 540 100 Plus
X 23542271 X 13801901..13802008 111..218 540 100 Plus
X 23542271 X 13802067..13802171 219..323 525 100 Plus
X 23542271 X 13802237..13802338 324..425 510 100 Plus
X 23542271 X 13801679..13801773 17..111 475 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:44:01 has no hits.

BO11013.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:09 Download gff for BO11013.complete
Subject Subject Range Query Range Percent Splice Strand
CG33174-RA 1..1935 17..1949 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:12 Download gff for BO11013.complete
Subject Subject Range Query Range Percent Splice Strand
CG33174-RA 688..2619 17..1950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:26 Download gff for BO11013.complete
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 810..2741 17..1950 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:09 Download gff for BO11013.complete
Subject Subject Range Query Range Percent Splice Strand
CG33174-RA 686..2624 13..1954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:09 Download gff for BO11013.complete
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 810..2741 17..1950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:09 Download gff for BO11013.complete
Subject Subject Range Query Range Percent Splice Strand
X 13801679..13801773 17..111 100 -> Plus
X 13801902..13802008 112..218 100 -> Plus
X 13802067..13802171 219..323 100 -> Plus
X 13802237..13802338 324..425 100 -> Plus
X 13802592..13802769 426..603 100 -> Plus
X 13802848..13803267 604..1023 100 -> Plus
X 13803326..13803850 1024..1548 100 -> Plus
X 13803909..13804050 1549..1690 100 -> Plus
X 13804123..13804227 1691..1795 100 -> Plus
X 13804294..13804421 1796..1923 100 -> Plus
X 13805452..13805476 1924..1950 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:26 Download gff for BO11013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13695712..13695806 17..111 100 -> Plus
arm_X 13695935..13696041 112..218 100 -> Plus
arm_X 13696100..13696204 219..323 100 -> Plus
arm_X 13696270..13696371 324..425 100 -> Plus
arm_X 13696625..13696802 426..603 100 -> Plus
arm_X 13696881..13697300 604..1023 100 -> Plus
arm_X 13697359..13697883 1024..1548 100 -> Plus
arm_X 13697942..13698083 1549..1690 100 -> Plus
arm_X 13698156..13698260 1691..1795 100 -> Plus
arm_X 13698327..13698454 1796..1923 100 -> Plus
arm_X 13699485..13699509 1924..1950 92   Plus

BO11013.pep Sequence

Translation from 16 to 1966

> BO11013.pep
MPGLVVFRRRWSVGSDDLVVPGAFLLTIHFICFVIVSVSLVIFEYNTRIL
SVKLLFYHLIGYLLILFFSICVEIGICVISMRGSILDAEARTSINIWIYL
KSLVILFDIAWLAVGSVWLGHYYTTAPIDDPKKVYIAIIICNWALVVITL
ITIWCTFDAAGRSWVKMKKYQRSMRETESRFNYKRSNSMNRNWRQRKVMR
AYQDSWDHRCRLLFCCMGSSERNRNSFTDIARLLSDFFRELDVVPSDVVA
GLVLLRKFQRLEREAIVRQRKNGTYEFLSGVPITERTQFLALNDAKNYDF
FQTVIHYMYFAQGAYGWPMYVIINRSKMWHLVPELKCFGCCCGTSDDTEV
IQDNCCLCNYAALKKTLQLGDIDIVYATYHVDVGETPFFVAIDYTHRAVV
ISIRGTLSMKDILTDLNAEGEVLPLQPPRDDWLGHKGMVQAAIYIRNKLQ
EENLIERALQRNPDRQTHTFDLVLVGHSLGAGTAAILAILLKPEHPTLQC
FSYSPPGGLLSMPAVEYSKSFITSVVLGKDVVPRIGLNQMEALRADLINA
IQRSVDPKWKTISCSVICCGCGPEPTSVVNMSGQDTHINQYQEERGTARS
TSAHPTDSSIALTLHQPLYPPGRIIHIVRHHPKPDEQKYDSGWRASFLDH

BO11013.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-PF 815 CG33174-PF 1..644 1..644 3417 100 Plus
inaE-PE 1318 CG33174-PE 1..644 1..644 3417 100 Plus
inaE-PA 644 CG33174-PA 1..644 1..644 3417 100 Plus
inaE-PD 737 CG33174-PD 1..644 1..644 3417 100 Plus
inaE-PH 729 CG33174-PH 1..636 1..636 3368 100 Plus