Clone Sequence Records
BO11025.3prime Sequence
920 bp (893 high quality bases) assembled on 2006-04-19
> BO11025.3prime
ATGGTCTAGAAAGCTTGCGAAGTCCTTGTCCCATCCAGTGACATCATCTG
GCGGCGGACCCTCAGGATCGGGAGGATAGTCATCAAAGTTTGTTGTATCC
ACAACGCTTTTCACGGCGGGCTTAATGGGCGGTTCCAGTGTGCAGTTCTG
CAGGCCCCACCAATAGAAGCCATCGAACCATTTGTGCTTTTGGATCTCGC
TGATTCCCCCACGCTGGTAGCCCAAACGCTCGGCTGGATTGTCGCGACAG
AGCTTCTTGATCAGGTTGCTGGCATTGCGGGTGATATTCCTTGGGAATTC
GATGGCGTCGATGCCCTTAAGTATAATGTTGTAGGTGCGCATGGGATCCG
AGCCCGTGAATGGAGGGGTACCAGTAAGTAACTCGAACATGAGCACTCCC
AGCGACCAGTAATCCGCACTGATGTCGTGGCCCCGGTTGAGAATCACCTC
GGGAGCCACGTACTCTGGAGTGCCGCAGAAAGTCCAGGTCTTCCTGCCCG
TCTGCAGCTTCTTGGCAAAGCCAAAGTCCACCAGCTTCACATATCCTCGT
TCATTGAGCAGCAGGTTCTCCGGCTTAAGATCGCGGTAGATGATGTTACG
CGAGTGCAAGTAATCAAAGGCCTCCACCACACATGCCGTGTAGAAGCGGG
TGGTGCTGTCGTCGAAGTTGCCCTTGTCCCGTAGAATCGTCCAGAGCTCT
CCGCCCAGGCAACTCTCCATCAGCATGTACAGGTACTTCTTGTCCTTGAA
GGTCTTGAACAGCTTCACGATGAACTGGCAATTGGCCTCGCCCATGATCT
CCTTCTCGGACATGATGTGTTGCTGCTGACGCGTCTCCACAATCTGTGAC
TTTTTCATCTGCTTGAGCGCGAAGGACCTGGAGCTATCTCCATTATTTTG
GACCAGCTCTACGCGACCGA
BO11025.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10033-PE | 2805 | for-RE | 1901..2802 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PC | 2685 | for-RC | 1781..2682 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PJ | 2805 | for-RJ | 1901..2802 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PH | 3267 | for-RH | 2363..3264 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PD | 2685 | for-RD | 1781..2682 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PG | 2685 | for-RG | 1781..2682 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PF | 2685 | for-RF | 1781..2682 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PI | 3267 | for-RI | 2363..3264 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PA | 3267 | for-RA | 2363..3264 | 920..19 | 4485 | 99.8 | Minus |
| CG10033-PB | 2229 | for-RB | 1325..2226 | 920..19 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| for-RK | 3223 | CG10033-RK | 2158..3059 | 920..19 | 4495 | 99.9 | Minus |
| for-RA | 4595 | CG10033-RA | 2987..3888 | 920..19 | 4495 | 99.9 | Minus |
| for-RI | 4581 | CG10033-RI | 2973..3874 | 920..19 | 4495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3623260..3623810 | 370..920 | 2740 | 99.8 | Plus |
| 2L | 23513712 | 2L | 3623006..3623196 | 182..372 | 955 | 100 | Plus |
| 2L | 23513712 | 2L | 3622781..3622949 | 19..187 | 830 | 99.4 | Plus |
| 2L | 23513712 | 2L | 786790..787109 | 425..744 | 340 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:46:11 has no hits.
BO11025.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:05 Download gff for
BO11025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-PG | 1782..2685 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:44 Download gff for
BO11025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10033-PB | 1326..2229 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:04:22 Download gff for
BO11025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RI | 2974..3874 | 19..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:58 Download gff for
BO11025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RI | 2974..3874 | 19..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:58 Download gff for
BO11025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3622785..3622943 | 23..181 | 100 | <- | Plus |
| 2L | 3623006..3623195 | 182..371 | 100 | <- | Plus |
| 2L | 3623262..3623809 | 372..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:04:22 Download gff for
BO11025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3623006..3623195 | 182..371 | 100 | <- | Plus |
| arm_2L | 3622785..3622943 | 23..181 | 100 | <- | Plus |
| arm_2L | 3623262..3623809 | 372..919 | 99 | | Plus |
BO11025.5prime Sequence
905 bp (882 high quality bases) assembled on 2006-04-19
> BO11025.5prime
GAAGTTATCAGTCGACATGCGTTTCTGCTTTGATCGGCTGTGCTTCGCAA
CCAAGCGGCCAGCCCAAAACTCCAACAGCAATGCACCACACAGCAGCACC
ACAGTAGATGCACCACCACGTCCAGCGGATGTAGATGTAGCCACTGTACC
AGTAGCAACACCAGCACCACCACCACAACAGCCAGTTAGTAATCTGTTCT
ATGCCGACTACCAGAAGCTGCAGCCGGCGATAATCGATCGGGACTGGGAG
CGGGACAGAGATACAGATACAGATACCAGGAGCGAGGCCAAGCCACCGGA
CATTGTGGAGCACATAGAACCCGTAGAGGAGCAGAGACAGATACACACAC
AGATACAGTCGCCGGCAGAGATACAGATACAGATACCCCCGACGCCCCCT
GCCCCATCGATACAGATACAGATACAGCAGCGCTATCGCCGGCACAGCAG
TGCCGAAGATCGCAATCTGAACACGAGGCGAAACGATTCGAATATTACGG
AGGCGTTACGAAAAGCAGCCAGTATGCAGCAGGAGCCGAACGCCAACTAT
CAGTTCCCAACCGACTTGGGTCTGGTGAGCATCGTCAACAATAATAATAA
CACAAACACCCATCCGAGTGGATCCAATAGCGGCAGCAACAACAACAGCA
ATATCAACAATAATCTGGTGGGTGGCATTGTGACCTTGCCGGCGGCTGGT
GGTCTCATAGGTCTGGAGCATACGGCGTCGGGTCTGCGACTGATACCAGC
ACCGCCTACCCACTCGGATGTGCTGACCCACACGCTGATCTATGGCACAC
CGCCCTCGGGCGCCCAGCAATTGAACCAGGATCCCCGAAGCCTTCTGCAC
CAACAGGAGCTGCAGCTACAGCAGCGCTATCAGCAAATGCAGCAGCTTCA
GGCGC
BO11025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10033-PH | 3267 | for-RH | 1..889 | 17..905 | 4420 | 99.8 | Plus |
| CG10033-PI | 3267 | for-RI | 1..889 | 17..905 | 4420 | 99.8 | Plus |
| CG10033-PA | 3267 | for-RA | 1..889 | 17..905 | 4420 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| for-RA | 4595 | CG10033-RA | 625..1513 | 17..905 | 4430 | 99.9 | Plus |
| for-RI | 4581 | CG10033-RI | 611..1499 | 17..905 | 4430 | 99.9 | Plus |
| for-RH | 4316 | CG10033-RH | 346..1234 | 17..905 | 4430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3639567..3640455 | 905..17 | 4430 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-13 00:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6886 | 54..184 | 179 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1139 | 98..182 | 154 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2667 | 550..661 | 148 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2440 | 578..659 | 140 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6861 | 578..659 | 140 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2413 | 578..659 | 138 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2870 | 823..901 | 133 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2410..2492 | 578..663 | 125 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6909 | 577..659 | 120 | 62.7 | Plus |
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1218..1259 | 143..184 | 120 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2429 | 625..663 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6754 | 627..663 | 113 | 78.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1068..1147 | 578..663 | 110 | 62.8 | Plus |
BO11025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:06 Download gff for
BO11025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-PH | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:45 Download gff for
BO11025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10033-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:37 Download gff for
BO11025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RH | 346..1234 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:35 Download gff for
BO11025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RH | 346..1234 | 17..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:35 Download gff for
BO11025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3639567..3640455 | 17..905 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:37 Download gff for
BO11025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3639567..3640455 | 17..905 | 99 | <- | Minus |
BO11025.complete Sequence
3298 bp assembled on 2008-01-16
GenBank Submission: FJ631961
> BO11025.complete
GAAGTTATCAGTCGACATGCGTTTCTGCTTTGATCGGCTGTGCTTCGCAA
CCAAGCGGCCAGCCCAAAACTCCAACAGCAATGCACCACACAGCAGCACC
ACAGTAGATGCACCACCACGTCCAGCGGATGTAGATGTAGCCACTGTACC
AGTAGCAACACCAGCACCACCACCACAACAGCCAGTTAGTAATCTGTTCT
ATGCCGACTACCAGAAGCTGCAGCCGGCGATAATCGATCGGGACTGGGAG
CGGGACAGAGATACAGATACAGATACCAGGAGCGAGGCCAAGCCACCGGA
CATTGTGGAGCACATAGAACCCGTAGAGGAGCAGAGACAGATACACACAC
AGATACAGTCGCCGGCAGAGATACAGATACAGATACCCCCGACGCCCCCT
GCCCCATCGATACAGATACAGATACAGCAGCGCTATCGCCGGCACAGCAG
TGCCGAAGATCGCAATCTGAACACGAGGCGAAACGATTCGAATATTACGG
AGGCGTTACGAAAAGCAGCCAGTATGCAGCAGGAGCCGAACGCCAACTAT
CAGTTCCCAACCGACTTGGGTCTGGTGAGCATCGTCAACAATAATAATAA
CACAAACACCCATCCGAGTGGATCCAATAGCGGCAGCAACAACAACAGCA
ATATCAACAATAATCTGGTGGGTGGCATTGTGACCTTGCCGGCGGCTGGT
GGTCTCATAGGTCTGGAGCATACGGCGTCGGGTCTGCGACTGATACCAGC
ACCGCCTACCCACTCGGATGTGCTGACCCACACGCTGATCTATGGCACAC
CGCCCTCGGGCGCCCAGCAATTGAACCAGGATCCCCGAAGCCTTCTGCAC
CAACAGGAGCTGCAGCTACAGCAGCGCTATCAGCAATTGCAGCAGCTTCA
GGCGCAGACGCAGGGCCTGTACACCAGCCAAGGAAGTCCGGTGCTGTATC
ACCAACCCAGTCCGGGATCGAGTCAACCGGTGGCCATACCCGGAGCCACT
TGCCATTCGCCCACGCAACTGCAGCCGCCCAACACGCTGAACCTGCAGCA
GCAGATGCAGAGTCTGCGGATCTCGGGATGCACGCCCAGCGGTACGGGTG
GCTCGGCCACGCCCTCGCCGGTGGGCCTGGTGGATCCGAATTTCATAGTC
AGCAACTATGTGGCCGCCTCGCCGCAGGAGGAGCGCTTCATTCAGATCAT
TCAGGCCAAGGAGCTCAAGATACAGGAAATGCAAAGGGCCCTCCAGTTCA
AGGACAACGAAATAGCCGAGCTAAAGTCGCACTTGGACAAATTCCAGAGT
GTCTTTCCCTTCAGCCGTGGCAGTGCGGCCGGTTGTGCGGGCACGGGCGG
AGCGTCGGGATCTGGAGCTGGCGGAAGTGGTGGCAGTGGTCCCGGCACCG
CCACAGGTGCCACACGCAAGTCGGGTCAGAATTTCCAGAGGCAGAGGGCA
TTGGGTATCTCCGCCGAGCCACAGAGCGAGTCCTCGCTGCTCCTCGAGCA
CGTCAGCTTTCCCAAATACGACAAGGATGAGCGCTCCCGTGAACTTATCA
AGGCTGCCATATTGGATAATGATTTCATGAAGAATCTGGATCTGACGCAG
ATCCGCGAGATCGTTGACTGCATGTATCCGGTTAAGTATCCAGCCAAGAA
TCTGATCATCAAGGAGGGAGATGTCGGAAGCATCGTTTATGTCATGGAAG
ATGGACGCGTGGAGGTTTCCCGCGAGGGCAAGTACCTCTCCACATTGTCG
GGAGCGAAGGTCCTTGGCGAATTGGCGATCCTGTACAACTGCCAGCGGAC
GGCGACCATCACCGCGATCACCGAGTGCAACCTGTGGGCCATCGAGCGCC
AGTGCTTTCAGACCATCATGATGCGAACGGGCCTGATCCGGCAGGCGGAG
TACAGCGATTTCCTCAAGAGTGTGCCCATCTTCAAAGACCTGGCGGAAGA
CACGCTCATCAAAATCTCCGATGTTTTGGAGGAGACGCACTACCAGCGTG
GCGACTACATAGTGCGCCAAGGCGCCCGAGGCGATACCTTCTTCATCATA
TCCAAGGGAAAAGTGCGAGTGACGATCAAGCAGCAGGACACGCAGGAGGA
GAAGTTCATTCGCATGCTGGGCAAAGGGGATTTCTTTGGAGAGAAGGCTC
TCCAGGGCGATGATCTGCGCACGGCGAATATTATTTGCGAGTCCGCCGAT
GGCGTCAGTTGTCTGGTCATCGATCGCGAGACCTTCAATCAGCTAATTTC
CAATCTAGACGAGATCAAGCATCGCTACGACGACGAGGGCGCCATGGAAC
GCAGAAAGATCAACGAGGAATTCCGGGACATTAACCTCACAGATCTGCGC
GTCATCGCAACCCTTGGAGTTGGAGGCTTCGGTCGCGTAGAGCTGGTCCA
AACTAATGGAGATAGCTCCAGGTCCTTCGCGCTCAAGCAGATGAAAAAGT
CACAGATTGTGGAGACGCGTCAGCAGCAACACATCATGTCCGAGAAGGAG
ATCATGGGCGAGGCCAATTGCCAGTTCATCGTGAAGCTGTTCAAGACCTT
CAAGGACAAGAAGTACCTGTACATGCTGATGGAGAGTTGCCTGGGCGGAG
AGCTCTGGACGATTCTACGGGACAAGGGCAACTTCGACGACAGCACCACC
CGCTTCTACACGGCATGTGTGGTGGAGGCCTTTGATTACTTGCACTCGCG
TAACATCATCTACCGCGATCTTAAGCCGGAGAACCTGCTGCTCAATGAAC
GAGGATATGTGAAGCTGGTGGACTTTGGCTTTGCCAAGAAGCTGCAGACG
GGCAGGAAGACCTGGACTTTCTGCGGCACTCCAGAGTACGTGGCTCCCGA
GGTGATTCTCAACCGGGGCCACGACATCAGTGCGGATTACTGGTCGCTGG
GAGTGCTCATGTTCGAGTTACTTACTGGTACCCCTCCATTCACGGGCTCG
GATCCCATGCGCACCTACAACATTATACTTAAGGGCATCGACGCCATCGA
ATTCCCAAGGAATATCACCCGCAATGCCAGCAACCTGATCAAGAAGCTCT
GTCGCGACAATCCAGCCGAGCGTTTGGGCTACCAGCGTGGGGGAATCAGC
GAGATCCAAAAGCACAAATGGTTCGATGGCTTCTATTGGTGGGGCCTGCA
GAACTGCACACTGGAACCGCCCATTAAGCCCGCCGTGAAAAGCGTTGTGG
ATACAACAAACTTTGATGACTATCCTCCCGATCCTGAGGGTCCGCCGCCA
GATGATGTCACTGGATGGGACAAGGACTTCGCAAGCTTTCTAGACCAT
BO11025.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| for-RA | 3267 | CG10033-PA | 1..3264 | 17..3280 | 16320 | 100 | Plus |
| for-RI | 3267 | CG10033-PI | 1..3264 | 17..3280 | 16320 | 100 | Plus |
| for-RH | 3267 | CG10033-PH | 1..3264 | 17..3280 | 16320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| for-RA | 4595 | CG10033-RA | 625..3888 | 17..3280 | 16320 | 100 | Plus |
| for-RI | 4581 | CG10033-RI | 611..3874 | 17..3280 | 16320 | 100 | Plus |
| for-RH | 4316 | CG10033-RH | 346..3609 | 17..3280 | 16320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3638939..3640455 | 1533..17 | 7585 | 100 | Minus |
| 2L | 23513712 | 2L | 3623260..3623881 | 2929..2308 | 3110 | 100 | Minus |
| 2L | 23513712 | 2L | 3624440..3624678 | 2157..1919 | 1195 | 100 | Minus |
| 2L | 23513712 | 2L | 3625997..3626218 | 1920..1699 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 3623006..3623196 | 3117..2927 | 955 | 100 | Minus |
| 2L | 23513712 | 2L | 3634239..3634406 | 1700..1533 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 3622781..3622949 | 3280..3112 | 830 | 99.4 | Minus |
| 2L | 23513712 | 2L | 3624223..3624374 | 2308..2157 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 786790..787109 | 2874..2555 | 340 | 73.8 | Minus |
Blast to na_te.dros performed 2014-11-28 07:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2832 | 816..1058 | 191 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6886 | 54..184 | 179 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1139 | 98..182 | 154 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2667 | 550..661 | 148 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2881 | 823..912 | 143 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6861 | 578..659 | 140 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2413 | 578..659 | 138 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6909 | 577..659 | 120 | 62.7 | Plus |
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1218..1259 | 143..184 | 120 | 76.2 | Plus |
BO11025.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:13 Download gff for
BO11025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RA | 1..3267 | 17..3283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:36:28 Download gff for
BO11025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RA | 623..3886 | 17..3282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:47 Download gff for
BO11025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RH | 346..3609 | 17..3282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:13 Download gff for
BO11025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RA | 623..3886 | 17..3280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:00 Download gff for
BO11025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RH | 346..3609 | 17..3282 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:00 Download gff for
BO11025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3624440..3624676 | 1921..2157 | 100 | <- | Minus |
| 2L | 3622778..3622943 | 3118..3282 | 98 | <- | Minus |
| 2L | 3623006..3623195 | 2928..3117 | 100 | <- | Minus |
| 2L | 3623262..3623881 | 2308..2927 | 100 | <- | Minus |
| 2L | 3624224..3624373 | 2158..2307 | 100 | <- | Minus |
| 2L | 3625997..3626216 | 1701..1920 | 100 | <- | Minus |
| 2L | 3634239..3634405 | 1534..1700 | 100 | <- | Minus |
| 2L | 3638939..3640455 | 17..1533 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:47 Download gff for
BO11025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3634239..3634405 | 1534..1700 | 100 | <- | Minus |
| arm_2L | 3622778..3622943 | 3118..3282 | 98 | <- | Minus |
| arm_2L | 3623006..3623195 | 2928..3117 | 100 | <- | Minus |
| arm_2L | 3623262..3623881 | 2308..2927 | 100 | <- | Minus |
| arm_2L | 3624224..3624373 | 2158..2307 | 100 | <- | Minus |
| arm_2L | 3624440..3624676 | 1921..2157 | 100 | <- | Minus |
| arm_2L | 3625997..3626216 | 1701..1920 | 100 | <- | Minus |
| arm_2L | 3638939..3640455 | 17..1533 | 100 | | Minus |
BO11025.pep Sequence
Translation from 16 to 3298
> BO11025.pep
MRFCFDRLCFATKRPAQNSNSNAPHSSTTVDAPPRPADVDVATVPVATPA
PPPQQPVSNLFYADYQKLQPAIIDRDWERDRDTDTDTRSEAKPPDIVEHI
EPVEEQRQIHTQIQSPAEIQIQIPPTPPAPSIQIQIQQRYRRHSSAEDRN
LNTRRNDSNITEALRKAASMQQEPNANYQFPTDLGLVSIVNNNNNTNTHP
SGSNSGSNNNSNINNNLVGGIVTLPAAGGLIGLEHTASGLRLIPAPPTHS
DVLTHTLIYGTPPSGAQQLNQDPRSLLHQQELQLQQRYQQLQQLQAQTQG
LYTSQGSPVLYHQPSPGSSQPVAIPGATCHSPTQLQPPNTLNLQQQMQSL
RISGCTPSGTGGSATPSPVGLVDPNFIVSNYVAASPQEERFIQIIQAKEL
KIQEMQRALQFKDNEIAELKSHLDKFQSVFPFSRGSAAGCAGTGGASGSG
AGGSGGSGPGTATGATRKSGQNFQRQRALGISAEPQSESSLLLEHVSFPK
YDKDERSRELIKAAILDNDFMKNLDLTQIREIVDCMYPVKYPAKNLIIKE
GDVGSIVYVMEDGRVEVSREGKYLSTLSGAKVLGELAILYNCQRTATITA
ITECNLWAIERQCFQTIMMRTGLIRQAEYSDFLKSVPIFKDLAEDTLIKI
SDVLEETHYQRGDYIVRQGARGDTFFIISKGKVRVTIKQQDTQEEKFIRM
LGKGDFFGEKALQGDDLRTANIICESADGVSCLVIDRETFNQLISNLDEI
KHRYDDEGAMERRKINEEFRDINLTDLRVIATLGVGGFGRVELVQTNGDS
SRSFALKQMKKSQIVETRQQQHIMSEKEIMGEANCQFIVKLFKTFKDKKY
LYMLMESCLGGELWTILRDKGNFDDSTTRFYTACVVEAFDYLHSRNIIYR
DLKPENLLLNERGYVKLVDFGFAKKLQTGRKTWTFCGTPEYVAPEVILNR
GHDISADYWSLGVLMFELLTGTPPFTGSDPMRTYNIILKGIDAIEFPRNI
TRNASNLIKKLCRDNPAERLGYQRGGISEIQKHKWFDGFYWWGLQNCTLE
PPIKPAVKSVVDTTNFDDYPPDPEGPPPDDVTGWDKDFASFLDH
BO11025.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| for-PA | 1088 | CG10033-PA | 1..1088 | 1..1088 | 5700 | 100 | Plus |
| for-PI | 1088 | CG10033-PI | 1..1088 | 1..1088 | 5700 | 100 | Plus |
| for-PH | 1088 | CG10033-PH | 1..1088 | 1..1088 | 5700 | 100 | Plus |
| for-PK | 894 | CG10033-PK | 367..894 | 561..1088 | 2786 | 99.8 | Plus |
| for-PG | 894 | CG10033-PG | 367..894 | 561..1088 | 2786 | 99.8 | Plus |
