Clone BO11026 Report

Search the DGRC for BO11026

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG12054-RA
Protein status:BO11026.pep:
Sequenced Size:1918

Clone Sequence Records

BO11026.3prime Sequence

906 bp (754 high quality bases) assembled on 2006-04-19

> BO11026.3prime
ATGGTCTAGAAAGCTTGCCGTCTCTTCGTTGACGGCGCCAGCGCCTACAA
CTTCAATGCCCGCCACTGTTGCTCCTCCTATGTCCTCCTTGCAATCTGTG
ATGCTGGCAATCGCTGCAGCCACGCTCTCCGAAATGCCGTCGCTCTGACC
CTCATCCGTCTCCATGGGCTCTATCAGTTCCAGTTTGCCCTTCTTCAGCA
GCTGCTGTTGCTGTTGCTGCGGCGTGGGCGAGCTGCTCTTGCTGCTGTTC
CCGCTGACGCTGCTCGTGGGACTGATGGGCAGAACGTGGTGTTGCTGCTG
CACCTGCTGCTGCAGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCT
GCTGTACCTGCTGCACCAACTGGGTTGGCTCCTGTAGTAGCAGTATGTTG
GTCTTCTTGGACAACGAGGCCACTAGAGCCTGCTGCTGCTGGGTACTACC
ATTCGTGGTGGTGAAGGTCAGCGTTTGGGTGTTTTTGGTGGGTGAGGTGG
CCGGCGTGAGAATGCCCAAGTTGACCAAATTGGGCAGCGGTTTGCTGCCA
TTGAGCACTGTTTGGCCAGTAGTTGTGGTCTTGTTGTGCTGCTGTTGCTG
CTGCACAATGTCCATAGAGGAGCCACCATTGGCCACATTGGTGGCCAGCT
TGAGTATCTTGCTGGCTGTGGCATTAGCAGCCATCAGATTGCTAACCGAC
TTGGCTGTCGGCGTGTTGTTGGTTTTAATGGATACTAAACCGAGTGTGCT
GCGCATTAAATTGTTGTTGTTGCTGTTACCTGTTGCAGTGTTTTGATGGA
GTTGCTGCTGCTGCTGCTGTTGCNGCTGCGGCTGTTGCTGCTGATGCTGT
TGCGTGGGAAGATTGGTCAGGGTGACACATTCCCGGCACTGAGCTGCTGC
AGGACA

BO11026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-PA 1887 CG12054-RA 1027..1884 876..19 4271 99.8 Minus
CG12054-PA 1887 CG12054-RA 996..1026 906..876 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RA 3130 CG12054-RA 1590..2478 906..19 4409 99.8 Minus
CG12054-RF 2408 CG12054-RF 1590..1717 906..780 604 98.4 Minus
CG12054-RE 4280 CG12054-RE 1590..1717 906..780 604 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31226951..31227839 906..19 4384 99.8 Minus
Blast to na_te.dros performed 2015-02-10 23:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6944 409..235 264 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2631 490..184 250 58.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..7018 409..185 242 60.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..7064 441..181 241 59.2 Minus

BO11026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:07 Download gff for BO11026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-PA 997..1887 18..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:47 Download gff for BO11026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-PA 997..1887 18..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:51:05 Download gff for BO11026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 1591..2482 13..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:05 Download gff for BO11026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 1591..2482 13..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:05 Download gff for BO11026.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31226952..31227843 13..905 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:51:05 Download gff for BO11026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27052674..27053565 13..905 99   Minus

BO11026.5prime Sequence

908 bp (818 high quality bases) assembled on 2006-04-19

> BO11026.5prime
GAAGTTATCAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACA
ATGGCTGCGGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATC
GAGGACACCCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCA
GGCCCAGCCTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCG
AGGAGAACCGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCC
CCACCGACCACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAA
TGTGGAGCTCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAGTATGT
CCTCGTCCAACCGCAGCACCACGCCAACAGGCAGCGAAATGGACGAGGAC
GAAATGGTGGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGA
GGAGTTTAGCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTG
GTGGAAGCAATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTT
CCGGGATGCAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTC
GAAGAACGGTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTC
ACTGCGGCAAGAGTTACAAAACGGCCCAGGGCCTGAAGAACCACGCGCTG
CACACACACAACTCGCAGCCGGATAGTGTGCTGAATGCCCAGCTGGCCAA
TGCGTTGGCCATAGGCGATGGGGCCAGTGCGGCCACGCCTGTGGGCAGCA
GCAACACCTCCTCCAATCCGAACCCGCCGCCCATCATTCAGCGCAGCAAC
TCGCCGTCTCAGTCGCTGGGCTCGTTGAGTCCGTCGAGCATCAGCAACAT
GTCGAGCA

BO11026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-PA 1887 CG12054-RA 1..892 17..908 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RF 2408 CG12054-RF 595..1486 17..908 4460 100 Plus
CG12054-RE 4280 CG12054-RE 595..1486 17..908 4460 100 Plus
CG12054-RA 3130 CG12054-RA 595..1486 17..908 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31226565..31226847 626..908 1415 100 Plus
3R 32079331 3R 31225811..31226077 115..381 1335 100 Plus
3R 32079331 3R 31226364..31226503 488..627 700 100 Plus
3R 32079331 3R 31226139..31226250 379..490 560 100 Plus
3R 32079331 3R 31221366..31221465 17..116 500 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:30:23 has no hits.

BO11026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:08 Download gff for BO11026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:49 Download gff for BO11026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:33 Download gff for BO11026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..1485 17..907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:14 Download gff for BO11026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..1485 17..907 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:14 Download gff for BO11026.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31221366..31221465 17..116 100 -> Plus
3R 31225813..31226076 117..380 100 -> Plus
3R 31226141..31226249 381..489 100 -> Plus
3R 31226366..31226503 490..627 100 -> Plus
3R 31226567..31226846 628..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:33 Download gff for BO11026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27047088..27047187 17..116 100 -> Plus
arm_3R 27051535..27051798 117..380 100 -> Plus
arm_3R 27051863..27051971 381..489 100 -> Plus
arm_3R 27052088..27052225 490..627 100 -> Plus
arm_3R 27052289..27052568 628..907 100   Plus

BO11026.complete Sequence

1918 bp assembled on 2008-01-16

GenBank Submission: FJ631962

> BO11026.complete
GAAGTTATCAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACA
ATGGCTGCGGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATC
GAGGACACCCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCA
GGCCCAGCCTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCG
AGGAGAACCGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCC
CCACCGACCACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAA
TGTGGAGCTCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAGTATGT
CCTCGTCCAACCGCAGCACCACGCCAACAGGCAGCGAAATGGACGAGGAC
GAAATGGTGGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGA
GGAGTTTAGCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTG
GTGGAAGCAATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTT
CCGGGATGCAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTC
GAAGAACGGTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTC
ACTGCGGCAAGAGTTACAAAACGGCCCAGGGCCTGAAGAACCACGCGCTG
CACACACACAACTCGCAGCCGGATAGTGTGCTGAATGCCCAGCTGGCCAA
TGCGTTGGCCATAGGCGATGGGGCCAGTGCGGCCACGCCTGTGGGCAGCA
GCAACACCTCCTCCAATCCGAACCCGCCGCCCATCATTCAGCGCAGCAAC
TCGCCGTCTCAGTCGCTGGGCTCGTTGAGTCCGTCGAGCATCAGCAACAT
GTCGAGCAGCGCCAGCAGTTGCCATGGAGGCAGCGGCAGTCTGTCGAACG
GGAATAATGGCAACAATGGGAGCACTACTAGCAACACTGCCATTCTCACT
AGCAACGGGAATGTCCTGCAGCAGCTCAGTGCCGGGAATGTGGTCACCCT
GACCAATCTTCCCACGCAACAGCATCAGCAGCAACAGCCGCAGCCGCAAC
AGCAGCAGCAGCAGCAACTCCATCAAAACACTGCAACAGGTAACAGCAAC
AACAACAATTTAATGCGCAGCACACTCGGTTTAGTATCCATTAAAACCAA
CAACACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAATGCCA
CAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGGTGGCTCC
TCTATGGACATTGTGCAGCAGCAACAGCAGCACAACAAGACCACAACTAC
TGGCCAAACAGTGCTCAATGGCAGCAAACCGCTGCCCAATTTGGTCAACT
TGGGCATTCTCACGCCGGCCACCTCACCCACCAAAAACACCCAAACGCTG
ACCTTCACCACCACGAATGGTAGTACCCAGCAGCAGCAGGCTCTAGTGGC
CTCGTTGTCCAAGAAGACCAACATACTGCTACTACAGGAGCCAACCCAGT
TGGTGCAGCAGGTACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAG
CAACTGCAGCAGCAGGTGCAGCAGCAACACCACGTTCTGCCCATCAGTCC
CACGAGCAGCGTCAGCGGGAACAGCAGCAAGAGCAGCTCGCCCACGCCGC
AGCAACAGCAACAGCAGCTGCTGAAGAAGGGCAAACTGGAACTGATAGAG
CCCATGGAGACGGATGAGGGTCAGAGCGACGGCATTTCGGAGAGCGTGGC
TGCAGCGATTGCCAGCATCACAGATTGCAAGGAGGACATAGGAGGAGCAA
CAGTGGCGGGCATTGAAGTTGTAGGCGCTGGCGCCGTCAACGAAGAGACG
GCAAGCTTTCTAGACCAT

BO11026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RA 1887 CG12054-PA 1..1884 17..1900 9420 100 Plus
CG12054-RF 1551 CG12054-PF 1..1123 17..1139 5615 100 Plus
CG12054-RE 1551 CG12054-PE 1..1123 17..1139 5615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RA 3130 CG12054-RA 595..2478 17..1900 9420 100 Plus
CG12054-RF 2408 CG12054-RF 595..1717 17..1139 5615 100 Plus
CG12054-RE 4280 CG12054-RE 595..1717 17..1139 5615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31226565..31227839 626..1900 6375 100 Plus
3R 32079331 3R 31225811..31226077 115..381 1335 100 Plus
3R 32079331 3R 31226364..31226503 488..627 700 100 Plus
3R 32079331 3R 31226139..31226250 379..490 560 100 Plus
3R 32079331 3R 31221366..31221465 17..116 500 100 Plus
Blast to na_te.dros performed 2014-11-26 14:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6944 1510..1684 264 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2631 1429..1735 250 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..7018 1510..1734 242 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..7064 1478..1738 241 59.2 Plus

BO11026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:14 Download gff for BO11026.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 1..1887 17..1901 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:22 Download gff for BO11026.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 593..2476 17..1902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:54 Download gff for BO11026.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..2478 17..1902 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:14 Download gff for BO11026.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 593..2480 17..1906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:42 Download gff for BO11026.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..2478 17..1902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:42 Download gff for BO11026.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31226141..31226249 381..489 100 -> Plus
3R 31226366..31226503 490..627 100 -> Plus
3R 31221366..31221465 17..116 100 -> Plus
3R 31225813..31226076 117..380 100 -> Plus
3R 31226567..31227839 628..1902 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:54 Download gff for BO11026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27047088..27047187 17..116 100 -> Plus
arm_3R 27051535..27051798 117..380 100 -> Plus
arm_3R 27051863..27051971 381..489 100 -> Plus
arm_3R 27052088..27052225 490..627 100 -> Plus
arm_3R 27052289..27053561 628..1902 99   Plus

BO11026.pep Sequence

Translation from 16 to 1918

> BO11026.pep
MAVFLINVCKYNGCGITFPSLSDLISHIEDTHIDYDPKVVEQKEQAQPAC
LPLSYVLRFITEENRKEAGSFLASNTTAPPTTNSGSNAAGHGNGNVELKR
KLAIKHHSYSMSSSNRSTTPTGSEMDEDEMVVTESEDSNDSWTTEEFSSE
FIMRYGSRHSGGGSNGTPGNEKPFACPVPGCKKRYKNVNGIKYHSKNGHK
KDGRVRKGYKCHCGKSYKTAQGLKNHALHTHNSQPDSVLNAQLANALAIG
DGASAATPVGSSNTSSNPNPPPIIQRSNSPSQSLGSLSPSSISNMSSSAS
SCHGGSGSLSNGNNGNNGSTTSNTAILTSNGNVLQQLSAGNVVTLTNLPT
QQHQQQQPQPQQQQQQQLHQNTATGNSNNNNLMRSTLGLVSIKTNNTPTA
KSVSNLMAANATASKILKLATNVANGGSSMDIVQQQQQHNKTTTTGQTVL
NGSKPLPNLVNLGILTPATSPTKNTQTLTFTTTNGSTQQQQALVASLSKK
TNILLLQEPTQLVQQVQQQQQQQQQQQQQLQQQVQQQHHVLPISPTSSVS
GNSSKSSSPTPQQQQQQLLKKGKLELIEPMETDEGQSDGISESVAAAIAS
ITDCKEDIGGATVAGIEVVGAGAVNEETASFLDH

BO11026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-PA 628 CG12054-PA 1..628 1..628 3223 100 Plus
CG12054-PF 516 CG12054-PF 1..418 1..413 1988 92.6 Plus
CG12054-PE 516 CG12054-PE 1..418 1..413 1988 92.6 Plus
CG12054-PB 406 CG12054-PB 1..308 111..413 1409 89.9 Plus
Smr-PF 3601 CG4013-PF 7..269 279..558 229 32.6 Plus