Clone Sequence Records
BO11026.3prime Sequence
906 bp (754 high quality bases) assembled on 2006-04-19
> BO11026.3prime
ATGGTCTAGAAAGCTTGCCGTCTCTTCGTTGACGGCGCCAGCGCCTACAA
CTTCAATGCCCGCCACTGTTGCTCCTCCTATGTCCTCCTTGCAATCTGTG
ATGCTGGCAATCGCTGCAGCCACGCTCTCCGAAATGCCGTCGCTCTGACC
CTCATCCGTCTCCATGGGCTCTATCAGTTCCAGTTTGCCCTTCTTCAGCA
GCTGCTGTTGCTGTTGCTGCGGCGTGGGCGAGCTGCTCTTGCTGCTGTTC
CCGCTGACGCTGCTCGTGGGACTGATGGGCAGAACGTGGTGTTGCTGCTG
CACCTGCTGCTGCAGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCT
GCTGTACCTGCTGCACCAACTGGGTTGGCTCCTGTAGTAGCAGTATGTTG
GTCTTCTTGGACAACGAGGCCACTAGAGCCTGCTGCTGCTGGGTACTACC
ATTCGTGGTGGTGAAGGTCAGCGTTTGGGTGTTTTTGGTGGGTGAGGTGG
CCGGCGTGAGAATGCCCAAGTTGACCAAATTGGGCAGCGGTTTGCTGCCA
TTGAGCACTGTTTGGCCAGTAGTTGTGGTCTTGTTGTGCTGCTGTTGCTG
CTGCACAATGTCCATAGAGGAGCCACCATTGGCCACATTGGTGGCCAGCT
TGAGTATCTTGCTGGCTGTGGCATTAGCAGCCATCAGATTGCTAACCGAC
TTGGCTGTCGGCGTGTTGTTGGTTTTAATGGATACTAAACCGAGTGTGCT
GCGCATTAAATTGTTGTTGTTGCTGTTACCTGTTGCAGTGTTTTGATGGA
GTTGCTGCTGCTGCTGCTGTTGCNGCTGCGGCTGTTGCTGCTGATGCTGT
TGCGTGGGAAGATTGGTCAGGGTGACACATTCCCGGCACTGAGCTGCTGC
AGGACA
BO11026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12054-PA | 1887 | CG12054-RA | 1027..1884 | 876..19 | 4271 | 99.8 | Minus |
CG12054-PA | 1887 | CG12054-RA | 996..1026 | 906..876 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12054-RA | 3130 | CG12054-RA | 1590..2478 | 906..19 | 4409 | 99.8 | Minus |
CG12054-RF | 2408 | CG12054-RF | 1590..1717 | 906..780 | 604 | 98.4 | Minus |
CG12054-RE | 4280 | CG12054-RE | 1590..1717 | 906..780 | 604 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31226951..31227839 | 906..19 | 4384 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-10 23:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6944 | 409..235 | 264 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2631 | 490..184 | 250 | 58.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..7018 | 409..185 | 242 | 60.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..7064 | 441..181 | 241 | 59.2 | Minus |
BO11026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:07 Download gff for
BO11026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-PA | 997..1887 | 18..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:47 Download gff for
BO11026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-PA | 997..1887 | 18..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:51:05 Download gff for
BO11026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 1591..2482 | 13..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:05 Download gff for
BO11026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 1591..2482 | 13..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:05 Download gff for
BO11026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31226952..31227843 | 13..905 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:51:05 Download gff for
BO11026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27052674..27053565 | 13..905 | 99 | | Minus |
BO11026.5prime Sequence
908 bp (818 high quality bases) assembled on 2006-04-19
> BO11026.5prime
GAAGTTATCAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACA
ATGGCTGCGGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATC
GAGGACACCCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCA
GGCCCAGCCTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCG
AGGAGAACCGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCC
CCACCGACCACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAA
TGTGGAGCTCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAGTATGT
CCTCGTCCAACCGCAGCACCACGCCAACAGGCAGCGAAATGGACGAGGAC
GAAATGGTGGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGA
GGAGTTTAGCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTG
GTGGAAGCAATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTT
CCGGGATGCAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTC
GAAGAACGGTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTC
ACTGCGGCAAGAGTTACAAAACGGCCCAGGGCCTGAAGAACCACGCGCTG
CACACACACAACTCGCAGCCGGATAGTGTGCTGAATGCCCAGCTGGCCAA
TGCGTTGGCCATAGGCGATGGGGCCAGTGCGGCCACGCCTGTGGGCAGCA
GCAACACCTCCTCCAATCCGAACCCGCCGCCCATCATTCAGCGCAGCAAC
TCGCCGTCTCAGTCGCTGGGCTCGTTGAGTCCGTCGAGCATCAGCAACAT
GTCGAGCA
BO11026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12054-PA | 1887 | CG12054-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12054-RF | 2408 | CG12054-RF | 595..1486 | 17..908 | 4460 | 100 | Plus |
CG12054-RE | 4280 | CG12054-RE | 595..1486 | 17..908 | 4460 | 100 | Plus |
CG12054-RA | 3130 | CG12054-RA | 595..1486 | 17..908 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31226565..31226847 | 626..908 | 1415 | 100 | Plus |
3R | 32079331 | 3R | 31225811..31226077 | 115..381 | 1335 | 100 | Plus |
3R | 32079331 | 3R | 31226364..31226503 | 488..627 | 700 | 100 | Plus |
3R | 32079331 | 3R | 31226139..31226250 | 379..490 | 560 | 100 | Plus |
3R | 32079331 | 3R | 31221366..31221465 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:30:23 has no hits.
BO11026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:08 Download gff for
BO11026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:49 Download gff for
BO11026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:33 Download gff for
BO11026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 595..1485 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:14 Download gff for
BO11026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 595..1485 | 17..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:14 Download gff for
BO11026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31221366..31221465 | 17..116 | 100 | -> | Plus |
3R | 31225813..31226076 | 117..380 | 100 | -> | Plus |
3R | 31226141..31226249 | 381..489 | 100 | -> | Plus |
3R | 31226366..31226503 | 490..627 | 100 | -> | Plus |
3R | 31226567..31226846 | 628..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:33 Download gff for
BO11026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27047088..27047187 | 17..116 | 100 | -> | Plus |
arm_3R | 27051535..27051798 | 117..380 | 100 | -> | Plus |
arm_3R | 27051863..27051971 | 381..489 | 100 | -> | Plus |
arm_3R | 27052088..27052225 | 490..627 | 100 | -> | Plus |
arm_3R | 27052289..27052568 | 628..907 | 100 | | Plus |
BO11026.complete Sequence
1918 bp assembled on 2008-01-16
GenBank Submission: FJ631962
> BO11026.complete
GAAGTTATCAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACA
ATGGCTGCGGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATC
GAGGACACCCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCA
GGCCCAGCCTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCG
AGGAGAACCGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCC
CCACCGACCACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAA
TGTGGAGCTCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAGTATGT
CCTCGTCCAACCGCAGCACCACGCCAACAGGCAGCGAAATGGACGAGGAC
GAAATGGTGGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGA
GGAGTTTAGCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTG
GTGGAAGCAATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTT
CCGGGATGCAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTC
GAAGAACGGTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTC
ACTGCGGCAAGAGTTACAAAACGGCCCAGGGCCTGAAGAACCACGCGCTG
CACACACACAACTCGCAGCCGGATAGTGTGCTGAATGCCCAGCTGGCCAA
TGCGTTGGCCATAGGCGATGGGGCCAGTGCGGCCACGCCTGTGGGCAGCA
GCAACACCTCCTCCAATCCGAACCCGCCGCCCATCATTCAGCGCAGCAAC
TCGCCGTCTCAGTCGCTGGGCTCGTTGAGTCCGTCGAGCATCAGCAACAT
GTCGAGCAGCGCCAGCAGTTGCCATGGAGGCAGCGGCAGTCTGTCGAACG
GGAATAATGGCAACAATGGGAGCACTACTAGCAACACTGCCATTCTCACT
AGCAACGGGAATGTCCTGCAGCAGCTCAGTGCCGGGAATGTGGTCACCCT
GACCAATCTTCCCACGCAACAGCATCAGCAGCAACAGCCGCAGCCGCAAC
AGCAGCAGCAGCAGCAACTCCATCAAAACACTGCAACAGGTAACAGCAAC
AACAACAATTTAATGCGCAGCACACTCGGTTTAGTATCCATTAAAACCAA
CAACACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAATGCCA
CAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGGTGGCTCC
TCTATGGACATTGTGCAGCAGCAACAGCAGCACAACAAGACCACAACTAC
TGGCCAAACAGTGCTCAATGGCAGCAAACCGCTGCCCAATTTGGTCAACT
TGGGCATTCTCACGCCGGCCACCTCACCCACCAAAAACACCCAAACGCTG
ACCTTCACCACCACGAATGGTAGTACCCAGCAGCAGCAGGCTCTAGTGGC
CTCGTTGTCCAAGAAGACCAACATACTGCTACTACAGGAGCCAACCCAGT
TGGTGCAGCAGGTACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAG
CAACTGCAGCAGCAGGTGCAGCAGCAACACCACGTTCTGCCCATCAGTCC
CACGAGCAGCGTCAGCGGGAACAGCAGCAAGAGCAGCTCGCCCACGCCGC
AGCAACAGCAACAGCAGCTGCTGAAGAAGGGCAAACTGGAACTGATAGAG
CCCATGGAGACGGATGAGGGTCAGAGCGACGGCATTTCGGAGAGCGTGGC
TGCAGCGATTGCCAGCATCACAGATTGCAAGGAGGACATAGGAGGAGCAA
CAGTGGCGGGCATTGAAGTTGTAGGCGCTGGCGCCGTCAACGAAGAGACG
GCAAGCTTTCTAGACCAT
BO11026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12054-RA | 1887 | CG12054-PA | 1..1884 | 17..1900 | 9420 | 100 | Plus |
CG12054-RF | 1551 | CG12054-PF | 1..1123 | 17..1139 | 5615 | 100 | Plus |
CG12054-RE | 1551 | CG12054-PE | 1..1123 | 17..1139 | 5615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12054-RA | 3130 | CG12054-RA | 595..2478 | 17..1900 | 9420 | 100 | Plus |
CG12054-RF | 2408 | CG12054-RF | 595..1717 | 17..1139 | 5615 | 100 | Plus |
CG12054-RE | 4280 | CG12054-RE | 595..1717 | 17..1139 | 5615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31226565..31227839 | 626..1900 | 6375 | 100 | Plus |
3R | 32079331 | 3R | 31225811..31226077 | 115..381 | 1335 | 100 | Plus |
3R | 32079331 | 3R | 31226364..31226503 | 488..627 | 700 | 100 | Plus |
3R | 32079331 | 3R | 31226139..31226250 | 379..490 | 560 | 100 | Plus |
3R | 32079331 | 3R | 31221366..31221465 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6944 | 1510..1684 | 264 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2631 | 1429..1735 | 250 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..7018 | 1510..1734 | 242 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..7064 | 1478..1738 | 241 | 59.2 | Plus |
BO11026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:14 Download gff for
BO11026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 1..1887 | 17..1901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:22 Download gff for
BO11026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 593..2476 | 17..1902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:54 Download gff for
BO11026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 595..2478 | 17..1902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:14 Download gff for
BO11026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 593..2480 | 17..1906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:42 Download gff for
BO11026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 595..2478 | 17..1902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:42 Download gff for
BO11026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31226141..31226249 | 381..489 | 100 | -> | Plus |
3R | 31226366..31226503 | 490..627 | 100 | -> | Plus |
3R | 31221366..31221465 | 17..116 | 100 | -> | Plus |
3R | 31225813..31226076 | 117..380 | 100 | -> | Plus |
3R | 31226567..31227839 | 628..1902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:54 Download gff for
BO11026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27047088..27047187 | 17..116 | 100 | -> | Plus |
arm_3R | 27051535..27051798 | 117..380 | 100 | -> | Plus |
arm_3R | 27051863..27051971 | 381..489 | 100 | -> | Plus |
arm_3R | 27052088..27052225 | 490..627 | 100 | -> | Plus |
arm_3R | 27052289..27053561 | 628..1902 | 99 | | Plus |
BO11026.pep Sequence
Translation from 16 to 1918
> BO11026.pep
MAVFLINVCKYNGCGITFPSLSDLISHIEDTHIDYDPKVVEQKEQAQPAC
LPLSYVLRFITEENRKEAGSFLASNTTAPPTTNSGSNAAGHGNGNVELKR
KLAIKHHSYSMSSSNRSTTPTGSEMDEDEMVVTESEDSNDSWTTEEFSSE
FIMRYGSRHSGGGSNGTPGNEKPFACPVPGCKKRYKNVNGIKYHSKNGHK
KDGRVRKGYKCHCGKSYKTAQGLKNHALHTHNSQPDSVLNAQLANALAIG
DGASAATPVGSSNTSSNPNPPPIIQRSNSPSQSLGSLSPSSISNMSSSAS
SCHGGSGSLSNGNNGNNGSTTSNTAILTSNGNVLQQLSAGNVVTLTNLPT
QQHQQQQPQPQQQQQQQLHQNTATGNSNNNNLMRSTLGLVSIKTNNTPTA
KSVSNLMAANATASKILKLATNVANGGSSMDIVQQQQQHNKTTTTGQTVL
NGSKPLPNLVNLGILTPATSPTKNTQTLTFTTTNGSTQQQQALVASLSKK
TNILLLQEPTQLVQQVQQQQQQQQQQQQQLQQQVQQQHHVLPISPTSSVS
GNSSKSSSPTPQQQQQQLLKKGKLELIEPMETDEGQSDGISESVAAAIAS
ITDCKEDIGGATVAGIEVVGAGAVNEETASFLDH
BO11026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12054-PA | 628 | CG12054-PA | 1..628 | 1..628 | 3223 | 100 | Plus |
CG12054-PF | 516 | CG12054-PF | 1..418 | 1..413 | 1988 | 92.6 | Plus |
CG12054-PE | 516 | CG12054-PE | 1..418 | 1..413 | 1988 | 92.6 | Plus |
CG12054-PB | 406 | CG12054-PB | 1..308 | 111..413 | 1409 | 89.9 | Plus |
Smr-PF | 3601 | CG4013-PF | 7..269 | 279..558 | 229 | 32.6 | Plus |