Clone BO11027 Report

Search the DGRC for BO11027

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG17724-RA
Protein status:BO11027.pep: validated full length
Sequenced Size:1588

Clone Sequence Records

BO11027.3prime Sequence

914 bp (854 high quality bases) assembled on 2006-04-19

> BO11027.3prime
ATGGTCTAGAAAGCTTGCCGCGGCGAACAACTGAGCAGCAGCAGCAGCGG
CAGCCTGTTGCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGC
TGCTGTTGGGGATTTGTGGCCAGGATGGGAATGGCCGTGCCGTCGGCGGT
CAGGATCAGGGTCTGCGTGGCCTGTGGAGCCGATGTGGCTTGAGACTGCG
ACGCCTGTTCGGTGGCCAGGGCCACGTTGCCCGGCAACGCAATCAGCTGC
TGCTGACCCGCCTTGCTGGGATGCGGCACCTGGGTGGCGGCGATTATGCT
GCCATCGGGCGACTGCAGCAGGATGGTGTTGGCCGGCAGGTTGAAGCAGG
TCACGGTGCCGTTGGAGGCCACAGTCTGCAGCTGAAGCGGAGGCGGTTGT
GGGGCCAGCAGCATGGCGGTGCCAGTCGTTGTGGCAGTCGCATTGTTCGT
GCTGCTCAGATCTAGGCCATTGGCGGTCGTCGTCTCTTGCAACTCCGGCT
GCTCCTGACTGGGCTCCTCGTCGATGATCTCCTCGACCAGGTCGTCCTCG
TTGAGCTCCTCGATGATGTCGTCGTCGTTCTCTATGTAGCCGGAAGCCTC
AACGCCGGAGCTAACCAAATTGACGACACCCGGCGGCGAGGGTGTTGGTG
TCGGCATGGCCAGGTAGTTCTCCCCCGACTTGGCCGTCACGGCCGTCCCC
TTGGGTATGCGGAACTTTCGCAGGATCTGGGCAGTCGAGGAGGAGAGCCC
GGACAGGGCAACTGCATCCTCATCCATGTCCTCGTCGAGCTCATCGTCCT
CGGCCAACATCTCCTCCTCGACCACTGGCTGCTGGTGTTCCACAGGTGTT
GCCTCCGGAGCGACGATTACTTGGCGCTGATTGCGATTGGTTGCATTGAC
GCGCACCAATGTAA

BO11027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17724-PA 1557 CG17724-RA 659..1554 914..19 4455 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
seq-RB 5631 CG32904-RB 3861..4756 914..19 4465 99.9 Minus
Kdm4B-RE 5718 CG33182-RE 3948..4843 914..19 4465 99.9 Minus
CG17724-RE 3779 CG17724-RE 1550..2445 914..19 4465 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13177428..13178323 19..914 4465 99.9 Plus
Blast to na_te.dros performed on 2015-02-09 02:41:27 has no hits.

BO11027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:09 Download gff for BO11027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17724-PA 661..1557 18..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:50 Download gff for BO11027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17724-PA 661..1557 18..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:49:00 Download gff for BO11027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17724-RB 1027..1922 19..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:22:37 Download gff for BO11027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17724-RE 1550..2445 19..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:22:37 Download gff for BO11027.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13177428..13178323 19..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:49:00 Download gff for BO11027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9064933..9065828 19..914 99   Plus

BO11027.5prime Sequence

892 bp (816 high quality bases) assembled on 2006-04-19

> BO11027.5prime
GAAGTTATCAGTCGACATGTTCAAGAGGCCATACAACACCACACCAAGCA
ACAACAACAGAACCCAGAACACCATCACCAATCCAAGTCCGAACTCGAAT
TCGAATCCGAATCAGAATCAGAATCGGATTCAGAGTCAGATCAATAACAC
CACACAAGATGATTCGCAACGCCGGCAAGTGGAAGCGTATCGCATTTACT
ACGAAGAAATCGTCGTCAAGCAGGCTAATGCCCGTGCTCGTCTTGGCGAC
AGCAGCACACGTTGCAGCAACAGCATCACCAGCCGCAATACCAGCAGCAG
TGGCCGCGGCAGCAGTTTCGTCGACAAGTTCGCTGACTTTGTGACCCACT
CGAGCCGAACTTCTCCCATGCCCAATCCCCCTGCCCAGTCCCATGTGCCG
CCAACCACAAGAAATGCGACTAATGCAATCCTTCCTCCCAAAACAAACAG
CAGCAGCAGCAGCAGCGGCGGCAACAGCAGCAGCAGCGGAGCCACTAGCA
ACAATGCATCCACCGTGGTGAGCAGCAGTGCGAGCAATGGCCTCAAGCCG
GCGGCCAAGAAGACACCAGTCATTCTGCTGGCCGCTCGTGGTGCCGCCAA
GCAGCCGCAGCTCAGCATTCTTAATGGCAACACCAAGGCCGGAACCGGAA
ATGCAAGCGGAGGCGGCGGCGGTGTTACATTGGTGCGCGTCAATGCAACC
AATCGCAATCAGCGCCAAGTTATCGTCGCTCCGGAGGCAACACCTGTGGA
ACACCAGCAGCCAGTGGTCGAGGAGGAGATGTTGGCCGAGGACGATGAGC
TCGACGAGGACATGGATGAGGATGCAGTTGCCCTGTCCGGGCTCTCCTCC
TCGACTGCCCAGATCCTGCGAAAGTTCCGCATACCCAAGGGG

BO11027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17724-PA 1557 CG17724-RA 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
seq-RB 5631 CG32904-RB 3203..4078 17..892 4380 100 Plus
Kdm4B-RE 5718 CG33182-RE 3290..4165 17..892 4380 100 Plus
CG17724-RE 3779 CG17724-RE 892..1767 17..892 4380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13178106..13178981 892..17 4380 100 Minus
Blast to na_te.dros performed 2015-02-11 12:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2984 34..636 225 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2560 243..510 175 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6822 246..326 171 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6853 246..315 170 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6844 246..327 167 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1079..1158 247..326 166 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6866 250..316 164 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2439 246..322 160 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6790 250..315 159 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2423 247..327 153 65.4 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3252..3345 218..310 134 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2357..2425 246..314 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1587 247..298 125 71.2 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 514..705 32..224 125 58.2 Plus
roo 9092 roo DM_ROO 9092bp 1109..1163 244..298 122 69.1 Plus
transib2 2844 transib2 TRANSIB2 2844bp 2532..2567 131..96 117 80.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2837 246..315 116 62.9 Plus
gypsy9 5349 gypsy9 GYPSY9 5349bp 551..606 30..85 109 66.1 Plus

BO11027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:10 Download gff for BO11027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17724-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:15:52 Download gff for BO11027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17724-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:29:15 Download gff for BO11027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17724-RB 369..1244 17..892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:55:52 Download gff for BO11027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17724-RE 892..1767 17..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:55:52 Download gff for BO11027.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13178106..13178981 17..892 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:29:15 Download gff for BO11027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9065611..9066486 17..892 100   Minus

BO11027.complete Sequence

1588 bp (1588 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ631963

> BO11027.complete
GAAGTTATCAGTCGACATGTTCAAGAGGCCATACAACACCACACCAAGCA
ACAACAACAGAACCCAGAACACCATCACCAATCCAAGTCCGAACTCGAAT
TCGAATCCGAATCAGAATCAGAATCGGATTCAGAGTCAGATCAATAACAC
CACACAAGATGATTCGCAACGCCGGCAAGTGGAAGCGTATCGCATTTACT
ACGAAGAAATCGTCGTCAAGCAGGCTAATGCCCGTGCTCGTCTTGGCGAC
AGCAGCACACGTTGCAGCAACAGCATCACCAGCCGCAATACCAGCAGCAG
TGGCCGCGGCAGCAGTTTCGTCGACAAGTTCGCTGACTTTGTGACCCACT
CGAGCCGAACTTCTCCCATGCCCAATCCCCCTGCCCAGTCCCATGTGCCG
CCAACCACAAGAAATGCGACTAATGCAATCCTTCCTCCCAAAACAAACAG
CAGCAGCAGCAGCAGCGGCGGCAACAGCAGCAGCAGCGGAGCCACTAGCA
ACAATGCATCCACCGTGGTGAGCAGCAGTGCGAGCAATGGCCTCAAGCCG
GCGGCCAAGAAGACACCAGTCATTCTGCTGGCCGCTCGTGGTGCCGCCAA
GCAGCCGCAGCTCAGCATTCTTAATGGCAACACCAAGGCCGGAACCGGAA
ATGCAAGCGGAGGCGGCGGCGGTGTTACATTGGTGCGCGTCAATGCAACC
AATCGCAATCAGCGCCAAGTTATCGTCGCTCCGGAGGCAACACCTGTGGA
ACACCAGCAGCCAGTGGTCGAGGAGGAGATGTTGGCCGAGGACGATGAGC
TCGACGAGGACATGGATGAGGATGCAGTTGCCCTGTCCGGGCTCTCCTCC
TCGACTGCCCAGATCCTGCGAAAGTTCCGCATACCCAAGGGGACGGCCGT
GACGGCCAAGTCGGGGGAGAACTACCTGGCCATGCCGACACCAACACCCT
CGCCGCCGGGTGTCGTCAATTTGGTTAGCTCCGGCGTTGAGGCTTCCGGC
TACATAGAGAACGACGACGACATCATCGAGGAGCTCAACGAGGACGACCT
GGTCGAGGAGATCATCGACGAGGAGCCCAGTCAGGAGCAGCCGGAGTTGC
AAGAGACGACGACCGCCAATGGCCTAGATCTGAGCAGCACGAACAATGCG
ACTGCCACAACGACTGGCACCGCCATGCTGCTGGCCCCACAACCGCCTCC
GCTTCAGCTGCAGACTGTGGCCTCCAACGGCACCGTGACCTGCTTCAACC
TGCCGGCCAACACCATCCTGCTGCAGTCGCCCGATGGCAGCATAATCGCC
GCCACCCAGGTGCCGCATCCCAGCAAGGCGGGTCAGCAGCAGCTGATTGC
GTTGCCGGGCAACGTGGCCCTGGCCACCGAACAGGCGTCGCAGTCTCAAG
CCACATCGGCTCCACAGGCCACGCAGACCCTGATCCTGACCGCCGACGGC
ACGGCCATTCCCATCCTGGCCACAAATCCCCAACAGCAGCAGCAGCAGCA
GCAGCAACAGCAGCAGCAGCAACAACAGCAACAGGCTGCCGCTGCTGCTG
CTGCTCAGTTGTTCGCCGCGGCAAGCTTTCTAGACCAT

BO11027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17724-RE 1629 CG17724-PE 1..1554 17..1570 7770 100 Plus
CG17724-RD 1557 CG17724-PD 1..1554 17..1570 7770 100 Plus
CG17724-RB 1557 CG17724-PB 1..1554 17..1570 7770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
seq-RB 5631 CG32904-RB 3203..4756 17..1570 7770 100 Plus
Kdm4B-RE 5718 CG33182-RE 3290..4843 17..1570 7770 100 Plus
CG17724-RE 3779 CG17724-RE 892..2445 17..1570 7770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13177428..13178981 1570..17 7770 100 Minus
Blast to na_te.dros performed 2014-11-27 20:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2984 34..636 225 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2560 243..510 175 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6822 246..326 171 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6853 246..315 170 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6844 246..327 167 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1079..1158 247..326 166 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6866 250..316 164 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2439 246..322 160 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6790 250..315 159 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2423 247..327 153 65.4 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3252..3345 218..310 134 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2357..2425 246..314 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1587 247..298 125 71.2 Plus
roo 9092 roo DM_ROO 9092bp 1109..1163 244..298 122 69.1 Plus
transib2 2844 transib2 TRANSIB2 2844bp 2532..2567 131..96 117 80.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2837 246..315 116 62.9 Plus

BO11027.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:48 Download gff for BO11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 1..1557 17..1571 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:45 Download gff for BO11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 984..2537 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:31 Download gff for BO11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RB 374..1922 22..1572 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:48 Download gff for BO11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 984..2537 17..1570 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:48 Download gff for BO11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RE 897..2445 22..1572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:48 Download gff for BO11027.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13177426..13178976 22..1572 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:31 Download gff for BO11027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9064931..9066481 22..1572 99   Minus

BO11027.pep Sequence

Translation from 16 to 1588

> BO11027.pep
MFKRPYNTTPSNNNRTQNTITNPSPNSNSNPNQNQNRIQSQINNTTQDDS
QRRQVEAYRIYYEEIVVKQANARARLGDSSTRCSNSITSRNTSSSGRGSS
FVDKFADFVTHSSRTSPMPNPPAQSHVPPTTRNATNAILPPKTNSSSSSS
GGNSSSSGATSNNASTVVSSSASNGLKPAAKKTPVILLAARGAAKQPQLS
ILNGNTKAGTGNASGGGGGVTLVRVNATNRNQRQVIVAPEATPVEHQQPV
VEEEMLAEDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSG
ENYLAMPTPTPSPPGVVNLVSSGVEASGYIENDDDIIEELNEDDLVEEII
DEEPSQEQPELQETTTANGLDLSSTNNATATTTGTAMLLAPQPPPLQLQT
VASNGTVTCFNLPANTILLQSPDGSIIAATQVPHPSKAGQQQLIALPGNV
ALATEQASQSQATSAPQATQTLILTADGTAIPILATNPQQQQQQQQQQQQ
QQQQQQAAAAAAAQLFAAASFLDH

BO11027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17724-PE 542 CG17724-PE 1..522 1..522 2598 99.2 Plus
CG17724-PD 518 CG17724-PD 1..518 1..518 2597 100 Plus
CG17724-PB 518 CG17724-PB 1..518 1..518 2597 100 Plus
CG17724-PF 518 CG17724-PF 1..518 1..518 2597 100 Plus
CG17724-PA 518 CG17724-PA 1..518 1..518 2597 100 Plus