Clone Sequence Records
BO11031.3prime Sequence
829 bp (778 high quality bases) assembled on 2006-04-19
> BO11031.3prime
ATGGTCTAGAAAGCTTGCTTTGAGCGTATTGTAAATGTTATCCTCTCCGG
CCAATTCAACGGTGGTGATGTGGGCAGCGTGCCTCTCGCCCAGCGGTTCC
TCGCCCAGGTACACAGTATGGTAGCTGATTGCGCTGCTCTTCACCGCCGC
CGTAGCTCCATTCACCTCAATCCGACTGACCGACTGTGGTCCATTGACCG
AATACTTGAGCGATGCATAATCTCCATCATCGTCGGGCACATGAGTGAAC
TGAGTGGCGCCCGAAAAGGTGTCCACTGTGTGCGAGGGACAGATTTCGGC
GTATATATTCTCCTTGGTATAGTCCACAGCGGGAACTGGTCTACTGGCGG
ACTCCGATCGCAGGCAGTCCCCGCCGGAAATCACAAGCGAATCGCGCACA
CTGGAGTAGGGCAAGTCGTCTTCCACCAGCGATGCGGGCGATATCGCCAG
TTGGTTGAGTCCTCCTCCCAACAGAGAAACTCCACCGGCTGCCCTTCTTC
CAGTGACCGGTTCCTTGGTCAGCGCCTGTTGCTGCGCCTTTAGCAACATC
AGATGTCGCTTCTCCTTTTCAGCCTCGTGAAGTTGCAACTTTTGCGGCAA
GCTAAACAGAGGTAACTGGTGCAAACTGGACGATGACTTGCTATACTGCC
TGGTCTTCACGTGAAACTCGTTGTACAGCTTCTCCGTGATGAAGGACTGT
GGAGGTGGGGTCTGATTCTCCACATCTTCCAGCTCGGTACCTGCCTCACT
GATGGCGTCATTGTGATTGTGGCTGGCCAGCAAATCAGGTCGTTGCTTGC
ATTGACCATTGAGAAGCTCAATATCCTGC
BO11031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9239-PA | 3324 | B4-RA | 2511..3321 | 829..19 | 4055 | 100 | Minus |
| CG9239-PB | 3324 | B4-RB | 2511..3321 | 829..19 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B4-RC | 8094 | CG9239-RC | 3401..4211 | 829..19 | 4055 | 100 | Minus |
| B4-RB | 5743 | CG9239-RB | 3082..3892 | 829..19 | 4055 | 100 | Minus |
| B4-RA | 5920 | CG9239-RA | 3259..4069 | 829..19 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13504507..13505317 | 19..829 | 4055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:46:18 has no hits.
BO11031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:56:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:01 Download gff for
BO11031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9239-PB | 2511..3324 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:04:23 Download gff for
BO11031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 3259..4069 | 19..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:10 Download gff for
BO11031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 3259..4069 | 19..829 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:10 Download gff for
BO11031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13504507..13505317 | 19..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:04:23 Download gff for
BO11031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13504507..13505317 | 19..829 | 100 | | Plus |
BO11031.5prime Sequence
936 bp (835 high quality bases) assembled on 2006-04-19
> BO11031.5prime
GAAGTTATCAGTCGACATGAACGAGACCTTAAAGCTGTCCGGACTCGGAA
TGCAGCGCACCAATATCGAGCTCGAGCGGCAGAGGCACCTGGCCAACTGG
CTGATGAACAGTAGACCGCACATGCCCGGCGGACCAGCAGCAGCAACAAC
AACATCAGCGGCAGCAGCAACAACACCCACTGCATCAGCCACAAAGGGCG
CAACAACAACAACAGCTACAACTACAAATCCTGGCTCCACAGTGGGTGGA
GCAGGCGCTGGCCCAGTGGGCGGCAACGGGGTCGCAACAGCAGCAGCAGC
GGGCGCACCCAGCAACAGCGTCGCAGCTGCAGCAGCAGCTGCATGTAACG
GTGGAGCAGCCGTTGGCGCCCATCACGGCCACCATTCGGCGGCTGGGGCG
CGCAAGCCCAAACTGCGGCGCTTCAACTCCCACGACACCAGTTCGAATAT
GTTCTCGGTGGCCGATTTCGAGAACGCCCGCCTAGCTCGCCGCAACGAGA
TCGAGCTGAACCAGCGGAGGGCACGACGCGTGCGCGGCAGTGCCAACAAC
AGCACCTACGGCCTGGGATCGGGCTCAGGATTGCTGGGAGGTGCCCATTC
TGGATACTGTGACGCACTCAATGGCAGCGGCGATTACTCCACCGGGGACA
GCAAGGCCTCCAAGGGCAGCAGCGAAGGTGCGCTGACAGCCATTGAGTTC
CTTGAGCGGAATTCCCTGCCACGAGTCGTCCGCATTCTGCATGCGAGCAA
GAGCTCAAACGAAACGCTGCAGTCCAGCTCATCGCATGGCTCCTCCACGG
CGGCATCGAGCAGCTCCTCGACGGGAGCGAATCCGTTTGGGTCTGGTGGC
AGTGGTGGTGGAAACATTTCCAGTGGCAACATTGACACCGGCACCCATTC
ATCGTCCAGCGAAAGCAGCGCCACCGGAACGGAACT
BO11031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9239-PA | 3324 | B4-RA | 1..913 | 17..929 | 4490 | 99.6 | Plus |
| CG9239-PB | 3324 | B4-RB | 1..913 | 17..929 | 4490 | 99.6 | Plus |
| CG11172-PA | 4260 | NFAT-RA | 589..629 | 135..175 | 155 | 95.1 | Plus |
| CG4722-PA | 2091 | bib-RA | 1978..2015 | 138..175 | 140 | 94.7 | Plus |
| CG31868-PA | 2907 | Samuel-RA | 1146..1173 | 150..177 | 140 | 100 | Plus |
| CG3327-PC | 3054 | E23-RC | 293..334 | 135..176 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B4-RC | 8094 | CG9239-RC | 891..1811 | 17..936 | 4535 | 99.6 | Plus |
| B4-RB | 5743 | CG9239-RB | 572..1492 | 17..936 | 4535 | 99.6 | Plus |
| B4-RA | 5920 | CG9239-RA | 749..1669 | 17..936 | 4535 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13512958..13513293 | 352..17 | 1680 | 100 | Minus |
| 2L | 23513712 | 2L | 13509466..13509793 | 677..350 | 1640 | 100 | Minus |
| 2L | 23513712 | 2L | 13508852..13509104 | 929..677 | 1220 | 98.8 | Minus |
| X | 23542271 | X | 13649985..13650039 | 135..189 | 185 | 89.1 | Plus |
Blast to na_te.dros performed 2015-02-11 09:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6944 | 133..339 | 321 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6945 | 136..361 | 320 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2516 | 135..347 | 283 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2673 | 136..357 | 277 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2554 | 57..348 | 264 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2539 | 133..343 | 259 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6917 | 133..300 | 256 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6917 | 162..360 | 250 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 131..226 | 246 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2494 | 53..226 | 238 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2476..2661 | 133..319 | 229 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2954 | 69..242 | 226 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6895 | 53..227 | 224 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6861 | 133..226 | 223 | 73.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6937 | 136..242 | 220 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 141..228 | 219 | 75.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2476 | 133..226 | 218 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2474 | 131..227 | 215 | 69.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1174 | 131..230 | 212 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1613 | 138..214 | 200 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2971 | 133..334 | 195 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2608..2849 | 133..362 | 184 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..6923 | 133..210 | 183 | 70.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1163 | 131..186 | 172 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2982 | 135..319 | 170 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2910..2997 | 135..222 | 162 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1135 | 139..227 | 161 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2500..2546 | 133..179 | 154 | 80.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 117..156 | 133..172 | 146 | 85 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11295..11334 | 133..172 | 146 | 85 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1600 | 133..180 | 145 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6877..6923 | 131..177 | 145 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2836 | 137..226 | 144 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2853 | 133..360 | 142 | 55.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6050..6094 | 129..172 | 141 | 82.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 50..213 | 35..193 | 139 | 60.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9080..9243 | 35..193 | 139 | 60.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..8018 | 140..213 | 135 | 66.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7505..7546 | 129..169 | 135 | 83.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9386..9462 | 140..213 | 135 | 66.2 | Plus |
| BS | 5142 | BS BS 5142bp | 2015..2091 | 162..239 | 135 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2879..2966 | 143..233 | 132 | 63.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1022 | 139..191 | 130 | 71.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 910..942 | 138..170 | 129 | 87.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12088..12120 | 138..170 | 129 | 87.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7384..7458 | 117..189 | 127 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5619..5681 | 168..233 | 125 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6905..6999 | 135..226 | 125 | 62.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 994..1163 | 2..162 | 123 | 58.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..196 | 139..215 | 123 | 65.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9226 | 139..215 | 123 | 65.4 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..586 | 142..241 | 121 | 59.2 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 145..222 | 120 | 61.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6598..6671 | 133..209 | 116 | 68.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8054..8127 | 133..209 | 116 | 68.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8870..8910 | 149..189 | 115 | 75.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7959..8020 | 133..191 | 114 | 67.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9403..9464 | 133..191 | 114 | 67.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 530..575 | 131..176 | 113 | 71.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8621..8681 | 131..189 | 112 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2478 | 133..156 | 111 | 95.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 976..1030 | 133..189 | 109 | 68.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3588..3625 | 192..229 | 109 | 76.3 | Plus |
BO11031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:56:17 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:02 Download gff for
BO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9239-PB | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:03 Download gff for
BO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 744..1669 | 13..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:48 Download gff for
BO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 744..1669 | 13..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:48 Download gff for
BO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13509467..13509792 | 351..676 | 100 | <- | Minus |
| 2L | 13512960..13513298 | 13..350 | 99 | | Minus |
| 2L | 13508844..13509104 | 677..936 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:03 Download gff for
BO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13508844..13509104 | 677..936 | 98 | <- | Minus |
| arm_2L | 13509467..13509792 | 351..676 | 100 | <- | Minus |
| arm_2L | 13512960..13513298 | 13..350 | 99 | | Minus |
BO11031.complete Sequence
3355 bp assembled on 2008-01-16
GenBank Submission: FJ631965
> BO11031.complete
GAAGTTATCAGTCGACATGAACGAGACCTTAAAGCTGTCCGGACTCGGAA
TGCAGCGCACCAATATCGAGCTCGAGCGGCAGAGGCACCTGGCCAACTGG
CTGATGAACAGTAGACCGCACATGCCCGGCGGACCAGCAGCAGCAACAAC
AACATCAGCGGCAGCAGCAACAACACCCACTGCATCAGCCACAAAGGGCG
CAACAACAACAACAGCTACAACTACAAATCCTGGCTCCACAGTGGGTGGA
GCAGGCGCTGGCCCAGTGGGCGGCAACGGGGTCGCAACAGCAGCAGCAGC
GGGCGCACCCAGCAACAGCGTCGCAGCTGCAGCAGCAGCTGCATGTAACG
GTGGAGCAGCCGTTGGCGCCCATCACGGCCACCATTCGGCGGCTGGGGCG
CGCAAGCCCAAACTGCGGCGCTTCAACTCCCACGACACCAGTTCGAATAT
GTTCTCGGTGGCCGATTTCGAGAACGCCCGCCTAGCTCGCCGCAACGAGA
TCGAGCTGAACCAGCGGAGGGCACGACGCGTGCGCGGCAGTGCCAACAAC
AGCACCTACGGCCTGGGATCGGGCTCAGGATTGCTGGGAGGTGCCCATTC
TGGATACTGTGACGCACTCAATGGCAGCGGCGATTACTCCACCGGGGACA
GCAAGGCCTCCAAGGGCAGCAGCGAAGGTGCGCTGACAGCCATTGAGTTC
CTTGAGCGGAATTCCCTGCCACGAGTCGTCCGCATTCTGCATGCGAGCAA
GAGCTCAAACGAAACGCTGCAGTCCAGCTCATCGCATGGCTCCTCCACGG
CGGCATCGAGCAGCTCCTCGACGGGAGCGAATCCGTTTGGTTCTGGTGGC
AGTGGTGGTGGAAACATTTCCAGTGGCAACATTGACACCGGCACCCATTC
ATCGTCCAGCGGAGGCAGCGCCACCGGAAACGGAACTGGCTCTGGTCCTG
GTCTTAGTTCGGGCTCGGGTTCTGGTTCTGGTTCTGGTCACCAGAACAAC
AACGGTCGCCACAGCAGCAACGGTGGCACTCCACCCGGCCACGATGAGCT
TTTTCTGCTCTACAGGCTGGTGCGACAGCGCAACATCTACCACGGACACA
ACGCCAAGACTCAGGCATCGCAGCGCAAGAAGACTCTGCTCATTCCACAG
GAGTTTCCGGGTTACTTTTCGATGCTAAGCGAGAAGGGTCTCCCCACGGC
CACACAATACGGATCTCTGATACAGCTGGTTCGGGAACGGGTTTACAAGT
TTGTCTCAGTGGACAACATGCCGGCGTTTACGGAATCCTCGCCCAACAGT
ACGAGCAGTCCAACGCACGAGGGATGCCTGCCCATAAACAAGGGACGACC
ACAGTACGTGAAAACGACGGCAAGGGGCGGGCAGGTATTCCGTCTGTTGG
CCGTCTTCGAGGATGGCAAACAGGATCAGGTCAATATGTCGCAACATGGC
AACGGCAATGCGACCAGGTCCCATGGCAGTGGGTACATGGGAAGGGAGAA
GGAAAAGAACCGGTATGCCCAGCTGCTTAATGAAAACCGGCAGGTGTTGT
ACGTCCCACTGTCCACCAAGGGCAAGTTCTACGAGATTGAACCGGGAATT
CCTCAGCTGCTTCAGAAACTGGGCGATGCGCAGCGCAAGCTGAATCCGGA
GTGCGTGCATCGTTTGAGTGCTTTGGTGACGGCGGCCAAGCAGTTACCGC
TAACACTGCGCTATATCTCCGGTCCAGGCGGACCCGACATTCCCGAGCAG
CTATGTATTAGTCAAGTGAGCAAGGAGGATGTGGTTGTTGGCTGTTCCAT
TGAGGACGTCGATACCCAGACGCCCTTGCAGCTGAGGAAGTTCTATCCCA
GTCGAGATATTCAGCTGGTAAAAAGTTATTTAGGATTTGACTCCGAACAA
CGGATGCTCGCTAACACGAATGTGCAGAATATGCTAAAGTTTTGTCAATT
TAATTGCGATCCATTCCTGAAGCTCGTGGAGATTGAGTTAATTCAGCGCT
CGGAACGTTCGGGAAGCAAGAATCGAGAGGGGCTACGAATCTTGAAGCCA
CTGCATTTTCCAAAGATCCTGAGACGCGAGAAGAGCTCCATGGCAGCAGC
GCACGAAAAGGAGGATTCCATTATTTTCCTCAGCAAATCGGATCTGGAGA
ATCTGGAAGCCAAGGAAGCGGCAGCTTCTGCTGCAGCTCACTCGGAATCC
AGTTTGAATCGCATCTCTGAGCGCATGCGTGTATTCCAGTCTACCAAGAA
GAAGTGGTTCGGAAAGCATCATCCGCAGCAACAGCAACCACAAATAGAGA
AACATCAATCTGACTTAGATCTCGATGAGCAGGCCAAGCGAATGAGCATG
GAGCGCTATACGGATATGTCTAAGCTTCTGCAGGAGCGTTTTGGCTCGAA
TCCCGAACAGCCAGAGCAAGATGCTATCTCCCTAAACAGCACAGCAGCGT
CCGACACCGAAACAACGATGCTGACTACCATGGAGCCGAGGTCTCTGGAC
ACAATGATGCAAAAGTCCATGTCCCTGCAGGATATTGAGCTTCTCAATGG
TCAATGCAAGCAACGACCTGATTTGCTGGCCAGCCACAATCACAATGACG
CCATCAGTGAGGCAGGTACCGAGCTGGAAGATGTGGAGAATCAGACCCCA
CCTCCACAGTCCTTCATCACGGAGAAGCTGTACAACGAGTTTCACGTGAA
GACCAGGCAGTATAGCAAGTCATCGTCCAGTTTGCACCAGTTACCTCTGT
TTAGCTTGCCGCAAAAGTTGCAACTTCACGAGGCTGAAAAGGAGAAGCGA
CATCTGATGTTGCTAAAGGCGCAGCAACAGGCGCTGACCAAGGAACCGGT
CACTGGAAGAAGGGCAGCCGGTGGAGTTTCTCTGTTGGGAGGAGGACTCA
ACCAACTGGCGATATCGCCCGCATCGCTGGTGGAAGACGACTTGCCCTAC
TCCAGTGTGCGCGATTCGCTTGTGATTTCCGGCGGGGACTGCCTGCGATC
GGAGTCCGCCAGTAGACCAGTTCCCGCTGTGGACTATACCAAGGAGAATA
TATACGCCGAAATCTGTCCCTCGCACACAGTGGACACCTTTTCGGGCGCC
ACTCAGTTCACTCATGTGCCCGACGATGATGGAGATTATGCATCGCTCAA
GTATTCGGTCAATGGACCACAGTCGGTCAGTCGGATTGAGGTGAATGGAG
CTACGGCGGCGGTGAAGAGCAGCGCAATCAGCTACCATACTGTGTACCTG
GGCGAGGAACCGCTGGGCGAGAGGCACGCTGCCCACATCACCACCGTTGA
ATTGGCCGGAGAGGATAACATTTACAATACGCTCAAAGCAAGCTTTCTAG
ACCAT
BO11031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B4-RC | 3324 | CG9239-PC | 1..3321 | 17..3337 | 16605 | 100 | Plus |
| B4-RB | 3324 | CG9239-PB | 1..3321 | 17..3337 | 16605 | 100 | Plus |
| B4-RA | 3324 | CG9239-PA | 1..3321 | 17..3337 | 16605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B4-RC | 8094 | CG9239-RC | 891..4211 | 17..3337 | 16605 | 100 | Plus |
| B4-RB | 5743 | CG9239-RB | 572..3892 | 17..3337 | 16605 | 100 | Plus |
| B4-RA | 5920 | CG9239-RA | 749..4069 | 17..3337 | 16605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13504507..13506684 | 3337..1160 | 10890 | 100 | Minus |
| 2L | 23513712 | 2L | 13508619..13509104 | 1162..677 | 2430 | 100 | Minus |
| 2L | 23513712 | 2L | 13512958..13513293 | 352..17 | 1680 | 100 | Minus |
| 2L | 23513712 | 2L | 13509466..13509793 | 677..350 | 1640 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6944 | 133..339 | 321 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6945 | 136..361 | 320 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2516 | 135..347 | 283 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2673 | 136..357 | 277 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2554 | 57..348 | 264 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2539 | 133..343 | 259 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6917 | 133..300 | 256 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6917 | 162..360 | 250 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 131..226 | 246 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2494 | 53..226 | 238 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2476..2661 | 133..319 | 229 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2954 | 69..242 | 226 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6895 | 53..227 | 224 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6861 | 133..226 | 223 | 73.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6937 | 136..242 | 220 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 141..228 | 219 | 75.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2476 | 133..226 | 218 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2474 | 131..227 | 215 | 69.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1174 | 131..230 | 212 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1613 | 138..214 | 200 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2971 | 133..334 | 195 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2608..2849 | 133..362 | 184 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..6923 | 133..210 | 183 | 70.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1163 | 131..186 | 172 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2982 | 135..319 | 170 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2910..2997 | 135..222 | 162 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1135 | 139..227 | 161 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2500..2546 | 133..179 | 154 | 80.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 117..156 | 133..172 | 146 | 85 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11295..11334 | 133..172 | 146 | 85 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1600 | 133..180 | 145 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6877..6923 | 131..177 | 145 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2836 | 137..226 | 144 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2853 | 133..360 | 142 | 55.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6050..6094 | 129..172 | 141 | 82.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 50..213 | 35..193 | 139 | 60.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9080..9243 | 35..193 | 139 | 60.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..8018 | 140..213 | 135 | 66.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7505..7546 | 129..169 | 135 | 83.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9386..9462 | 140..213 | 135 | 66.2 | Plus |
| BS | 5142 | BS BS 5142bp | 2015..2091 | 162..239 | 135 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2879..2966 | 143..233 | 132 | 63.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1022 | 139..191 | 130 | 71.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 910..942 | 138..170 | 129 | 87.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12088..12120 | 138..170 | 129 | 87.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7384..7458 | 117..189 | 127 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5619..5681 | 168..233 | 125 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6905..6999 | 135..226 | 125 | 62.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 994..1163 | 2..162 | 123 | 58.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..196 | 139..215 | 123 | 65.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9226 | 139..215 | 123 | 65.4 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 145..222 | 120 | 61.5 | Plus |
BO11031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:16 Download gff for
BO11031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RB | 1..3324 | 17..3340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:53 Download gff for
BO11031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RB | 572..3892 | 17..3339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:35 Download gff for
BO11031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 749..4069 | 17..3339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:17 Download gff for
BO11031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RB | 567..3892 | 13..3337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:54 Download gff for
BO11031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 749..4069 | 17..3339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:54 Download gff for
BO11031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13504504..13506683 | 1161..3339 | 99 | <- | Minus |
| 2L | 13508621..13509104 | 677..1160 | 100 | <- | Minus |
| 2L | 13509467..13509792 | 351..676 | 100 | <- | Minus |
| 2L | 13512960..13513293 | 17..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:35 Download gff for
BO11031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13504504..13506683 | 1161..3339 | 99 | <- | Minus |
| arm_2L | 13508621..13509104 | 677..1160 | 100 | <- | Minus |
| arm_2L | 13509467..13509792 | 351..676 | 100 | <- | Minus |
| arm_2L | 13512960..13513293 | 17..350 | 100 | | Minus |
BO11031.pep Sequence
Translation from 16 to 3355
> BO11031.pep
MNETLKLSGLGMQRTNIELERQRHLANWLMNSRPHMPGGPAAATTTSAAA
ATTPTASATKGATTTTATTTNPGSTVGGAGAGPVGGNGVATAAAAGAPSN
SVAAAAAAACNGGAAVGAHHGHHSAAGARKPKLRRFNSHDTSSNMFSVAD
FENARLARRNEIELNQRRARRVRGSANNSTYGLGSGSGLLGGAHSGYCDA
LNGSGDYSTGDSKASKGSSEGALTAIEFLERNSLPRVVRILHASKSSNET
LQSSSSHGSSTAASSSSSTGANPFGSGGSGGGNISSGNIDTGTHSSSSGG
SATGNGTGSGPGLSSGSGSGSGSGHQNNNGRHSSNGGTPPGHDELFLLYR
LVRQRNIYHGHNAKTQASQRKKTLLIPQEFPGYFSMLSEKGLPTATQYGS
LIQLVRERVYKFVSVDNMPAFTESSPNSTSSPTHEGCLPINKGRPQYVKT
TARGGQVFRLLAVFEDGKQDQVNMSQHGNGNATRSHGSGYMGREKEKNRY
AQLLNENRQVLYVPLSTKGKFYEIEPGIPQLLQKLGDAQRKLNPECVHRL
SALVTAAKQLPLTLRYISGPGGPDIPEQLCISQVSKEDVVVGCSIEDVDT
QTPLQLRKFYPSRDIQLVKSYLGFDSEQRMLANTNVQNMLKFCQFNCDPF
LKLVEIELIQRSERSGSKNREGLRILKPLHFPKILRREKSSMAAAHEKED
SIIFLSKSDLENLEAKEAAASAAAHSESSLNRISERMRVFQSTKKKWFGK
HHPQQQQPQIEKHQSDLDLDEQAKRMSMERYTDMSKLLQERFGSNPEQPE
QDAISLNSTAASDTETTMLTTMEPRSLDTMMQKSMSLQDIELLNGQCKQR
PDLLASHNHNDAISEAGTELEDVENQTPPPQSFITEKLYNEFHVKTRQYS
KSSSSLHQLPLFSLPQKLQLHEAEKEKRHLMLLKAQQQALTKEPVTGRRA
AGGVSLLGGGLNQLAISPASLVEDDLPYSSVRDSLVISGGDCLRSESASR
PVPAVDYTKENIYAEICPSHTVDTFSGATQFTHVPDDDGDYASLKYSVNG
PQSVSRIEVNGATAAVKSSAISYHTVYLGEEPLGERHAAHITTVELAGED
NIYNTLKASFLDH
BO11031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B4-PC | 1107 | CG9239-PC | 1..1107 | 1..1107 | 5681 | 100 | Plus |
| B4-PB | 1107 | CG9239-PB | 1..1107 | 1..1107 | 5681 | 100 | Plus |
| B4-PA | 1107 | CG9239-PA | 1..1107 | 1..1107 | 5681 | 100 | Plus |
| sbb-PE | 929 | CG5580-PE | 279..577 | 43..338 | 201 | 25.5 | Plus |
| sbb-PC | 929 | CG5580-PC | 279..577 | 43..338 | 201 | 25.5 | Plus |
| sbb-PE | 929 | CG5580-PE | 156..436 | 8..336 | 175 | 26 | Plus |
