Clone BO11035 Report

Search the DGRC for BO11035

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG4839-RA
Protein status:BO11035.pep: validated full length
Sequenced Size:3043

Clone Sequence Records

BO11035.3prime Sequence

892 bp (796 high quality bases) assembled on 2006-04-19

> BO11035.3prime
ATGGTCTAGAAAGCTTGCAAAGTCTTTATCCCATCCGCTCAGTTCCTCCG
GTGGCTCATAGTCGTTCTCAACACCCGAAGGACCAAAATATTGCAAGTCG
GTCCAACTCTTCAATGGTCTTTTGATGGGCGATGGCAATTGCTTCAGTTT
CAGTCTCTGCCAGTCGAGACTTTCGAACCAACTATGCCGCTTAATATCCG
CAATTCCCTTGCGCTGATATCCCAGTCTTTCCGCCGGCAGTTGCTTGCAA
AGATGCCGCACCAGGTGCTGTGCGGATTTGGGAATGCGCGATGGCATGTG
GATGACATCGATGCCGCTAAGGATTTGCTGATAGATCTTGATCTGGTTAA
CGCCCCTGAAGGGTGTTTTGCCAACCAGAAGTTCATATACCAGTATTCCC
AGTGCCCAATAGTCGACGGCACGATCGTGTCCGCGATCCAAGATTATCTC
GGGTGCCACGTACTCCGGTGTGCCAGCAAATGTGTTGGTCTTCTCATTCT
GCCGCACAAATTTGGCAAATCCAAAATCAACCAGTTTGCAATAGCCATCG
GTGCCCAGCATCAGATTCTCTGGCTTCAAGTCCCTGTAGATGAAGTGATG
GGAGTGCAAGTAATCGAATGCCTCGACGACACAGCCCGCTATAAATTTGG
CGGTCTTCTCATCGAAGTACTGCCGCTTTGACATCACCGTCCATACATCA
CCGCCCATGCAGGCCTCCATTAGGAAGTAAACGTATTTGTCATTGCGGTA
CGTGCGATATAGTTGTACTATAAATGGCGATTGGCGGCACTTGATCATAA
CGTTCTTCTCGTTGTAAACGTGCTCTATTTGATCTTGCTTGACCACCTCG
ATTTTCTTGATAATCTTCAAAGCCCACGCCTGCTGGTTGTAG

BO11035.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-PB 3012 CG4839-RB 2136..3009 892..19 4345 99.8 Minus
CG4839-PA 3012 CG4839-RA 2136..3009 892..19 4345 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-RA 6512 CG4839-RA 4445..5318 892..19 4355 99.9 Minus
CG4839-RB 3982 CG4839-RB 2812..3685 892..19 4355 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10154700..10155213 532..19 2570 100 Minus
2L 23513712 2L 10154254..10154487 763..530 1170 100 Minus
2L 23513712 2L 10154054..10154182 892..764 630 99.2 Minus
Blast to na_te.dros performed on 2015-01-31 17:07:54 has no hits.

BO11035.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:24 Download gff for BO11035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-PB 2136..3012 15..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:10 Download gff for BO11035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-PA 2136..3012 15..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:42:29 Download gff for BO11035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 2812..3699 5..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:54:02 Download gff for BO11035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 2812..3699 5..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:02 Download gff for BO11035.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10154054..10154182 764..892 99 -> Minus
2L 10154254..10154485 532..763 100 -> Minus
2L 10154701..10155227 5..531 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:29 Download gff for BO11035.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10154054..10154182 764..892 99 -> Minus
arm_2L 10154254..10154485 532..763 100 -> Minus
arm_2L 10154701..10155227 5..531 99   Minus

BO11035.5prime Sequence

824 bp (778 high quality bases) assembled on 2006-04-19

> BO11035.5prime
GAAGTTATCAGTCGACATGGCCTGCTTTCCACGACTTTTCCACAATCGCA
GCAAAAACAAATTCACGCCCGCCGAAGATGAGAACACCGATACGATACTC
AACACACAAGATAGTAACGTGCAAATTGGCAAGTACATCCGTCGCGAGGA
GAAGCCACTGTACTCGCCCATCGTCACTCCGAGTGCCAGTGAGGCCAAAC
TTCAGCGCCTCAGACAGCAACAGCAGCCGCCCGGCTCACCGCCCGCACCC
GCCAGGTGGACCCTGCACTCGGTTGCCGAAAATGGCAGCGCAAACAATGG
CGTCCAGGAGCGGAAGTTCCGCACCAACAAGGACAAACTGCAGGCGCAGG
ATGCATGCCCATCCGGCGGCAGTGCAATTAATGTCATACGCTCAAGTTCG
AAATTAAAACCAGTCAAAGAGCGACGGCCCACCGCCTTGCCCACCGAAGT
GCCCAGCATCGAGATCGAGGATGTTCGGGATGCAAAGGACACTGGAGATG
GCATGGATTCACTGGGGGAGCGGGTGCAGCCGGGTGCTAATGCACATGTC
GATGTCGTCGATGGCGGCGGCAAGTCAAAACTCAAAGTGAATGTGAATGG
CATAATTGATGAGAGCGTCGCCCACGACGATGACTATGACACACCCTCGA
GCAACTCCATAGCCACAACACCTGTGACCGAGGGTCCTGTAAAGTTTTTC
ATTGGTCACACGCAGGAACTAAGCGCCCAGCAAACGGATGACACCTTGTC
CTGCCAGAGTAGCGATGCCAACAACAACAGTGCCGCCAAACTGACAAATG
GCGTCGTGCCACAGGAGCAACCGG

BO11035.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-PB 3012 CG4839-RB 1..808 17..824 4040 100 Plus
CG4839-PA 3012 CG4839-RA 1..808 17..824 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-RA 6512 CG4839-RA 2310..3117 17..824 4040 100 Plus
CG4839-RB 3982 CG4839-RB 677..1484 17..824 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10150730..10151362 192..824 3165 100 Plus
2L 23513712 2L 10147085..10147189 17..121 525 100 Plus
2L 23513712 2L 10150337..10150410 121..194 370 100 Plus
Blast to na_te.dros performed on 2015-02-02 13:07:55 has no hits.

BO11035.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:25 Download gff for BO11035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-PB 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:11 Download gff for BO11035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:06:49 Download gff for BO11035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 662..1484 4..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:46:21 Download gff for BO11035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 662..1484 4..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:46:21 Download gff for BO11035.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10147070..10147189 4..121 95 -> Plus
2L 10150338..10150409 122..193 100 -> Plus
2L 10150732..10151362 194..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:06:49 Download gff for BO11035.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10147070..10147189 4..121 95 -> Plus
arm_2L 10150338..10150409 122..193 100 -> Plus
arm_2L 10150732..10151362 194..824 100   Plus

BO11035.complete Sequence

3043 bp assembled on 2007-11-02

GenBank Submission: FJ631966

> BO11035.complete
GAAGTTATCAGTCGACATGGCCTGCTTTCCACGACTTTTCCACAATCGCA
GCAAAAACAAATTCACGCCCGCCGAAGATGAGAACACCGATACGATACTC
AACACACAAGATAGTAACGTGCAAATTGGCAAGTACATCCGTCGCGAGGA
GAAGCCACTGTACTCGCCCATCGTCACTCCGAGTGCCAGTGAGGCCAAAC
TTCAGCGCCTCAGACAGCAACAGCAGCCGCCCGGCTCACCGCCCGCACCC
GCCAGGTGGACCCTGCACTCGGTTGCCGAAAATGGCAGCGCAAACAATGG
CGTCCAGGAGCGGAAGTTCCGCACCAACAAGGACAAACTGCAGGCGCAGG
ATGCATGCCCATCCGGCGGCAGTGCAATTAATGTCATACGCTCAAGTTCG
AAATTAAAACCAGTCAAAGAGCGACGGCCCACCGCCTTGCCCACCGAAGT
GCCCAGCATCGAGATCGAGGATGTTCGGGATGCAAAGGACACTGGAGATG
GCATGGATTCACTGGGGGAGCGGGTGCAGCCGGGTGCTAATGCACATGTC
GATGTCGTCGATGGCGGCGGCAAGTCAAAACTCAAAGTGAATGTGAATGG
CATAATTGATGAGAGCGTCGCCCACGACGATGACTATGACACACCCTCGA
GCAACTCCATAGCCACAACACCTGTGACCGAGGGTCCTGTAAAGTTTTTC
ATTGGTCACACGCAGGAACTAAGCGCCCAGCAAACGGATGACACCTTGTC
CTGCCAGAGTAGCGATGCCAACAACAACAGTGCCGCCAAACTGACAAATG
GCGTCGTGCCACAGGAGCAACCGGAACGGGAAATGGGCAAGCAGCAAGCA
CTCCAGGCTCCGCCCCGCGCCAAGAGCTCCAGCAATGTGTCACTCAATTA
TCTGGCCAAGAGCCAGACGGACAGCCAGCGTCGCCGACGTGTGTCCACGA
TGCCCGATATTAACATACCGCCAGCACCGCCGTTGCCGCCGGAACTCCTC
GTCCCCGGAACGCCGCTCCATCTGCGCAAGAAACGGAGCATGGAGCGACA
GCAGCAGCAGAAGCAACAGGAGCAGCAGCAGCAGCAGGAGATCCAGCAGG
ATGCTACGAATAGTCAAGATCAAATGGCAGGAGCTGAGGAGAGTCACAAG
TCCAGCGATTCCTCGACACCGAAAACCCATCGCGTTGAAGGTGGCCTCAT
CTATGTCCGTCCCAATTTTCCCATTCAGAGCGACATTGAAATCGAATCTA
TTGCAAAGGACGAAGGCACACGCAATCTCATACGAACGGCCATTGAGCGC
AATGATTTCCTCAATAATCTAATGGACAAGGAGCGCAAGGAGATGGTTAT
CAATGCAATGGCACCGGCCAGCTACAGGAAGCACAGCCTCATCATTCGTG
AGCACGAGGAGGGTTCCGAGATATATGTCTCCGCCGAGGGACAGTACGAT
GTCATCCGTGGTGGCCAACTGGTGGCCAGCTTTGGACCGGCCACTGTGTT
CGGCGAGCTGGCCATTCTCTACAATGCTCCACGCCAGGCGTCCATAGAGG
CTGCCACCGATGCACGCGTTTGGAAAATCGCACGCGAAACCTTCCGGGCC
ATCATGCAAATCTCGGGGTCCAGGGAGCGCGAGGAGAACCTTCAGTTCCT
GCGCTCCGCTCCATTCCTGCAGGAGTTCGACCAAAGTTTGTTGCTCAAAG
TCGTTGATCTTTTGCAGCGGAAATTCTACGAAACCGACAGCTGTATCGTT
CGCGAAGGTGAGCTGGGCAACGAGTTCTACATCATCCGGTGCGGAACTGT
GACCATAAAGAAGCTGGACGAACAGCAGCAGGAGCAGATTGTGGCGAATC
GAAAGCGAGGTGACTACTTCGGGGAGCAGGCACTGCTCAATGCGGATGTG
CGACAGGCCAGTGTCTATGCGGATGCCCCGGGCACAGAGGTCCTAATGCT
GGACAGAGAAGCCTTCATTAGCTATTTGGGAACCATAAAGCAGCTGCGCG
AGAAGCCCAGTAGTCAGCGCAACGATACGAGTGGTCGTTCCAGCACCAAG
TCTCTGGAGTTCGACAACGAGTACTCCCAGGTGGCCATCTCGGAGCTAAA
GAAGATAGCCACGCTGGGCTGCGGCGCCTTTGGACGTGTGGATCTGGTGG
CCTACAACCAGCAGGCGTTGGCTTTGAAGATTATCAAGAAAATCGAGGTG
GTCAAGCAAGATCAAATAGAGCACGTTTACAACGAGAAGAACGTTATGAT
CAAGTGCCGCCAATCGCCATTTATAGTACAACTATATCGCACGTACCGCA
ATGACAAATACGTTTACTTCCTAATGGAGGCCTGCATGGGCGGTGATGTA
TGGACGGTGATGTCAAAGCGGCAGTACTTCGATGAGAAGACCGCCAAATT
TATAGCGGGCTGTGTCGTCGAGGCATTCGATTACTTGCACTCCCATCACT
TCATCTACAGGGACTTGAAGCCAGAGAATCTGATGCTGGGCACCGATGGC
TATTGCAAACTGGTTGATTTTGGATTTGCCAAATTTGTGCGGCAGAATGA
GAAGACCAACACATTTGCTGGCACACCGGAGTACGTGGCACCCGAGATAA
TCTTGGATCGCGGACACGATCGTGCCGTCGACTATTGGGCACTGGGAATA
CTGGTATATGAACTTCTGGTTGGCAAAACACCCTTCAGGGGCGTTAACCA
GATCAAGATCTATCAGCAAATCCTTAGCGGCATCGATGTCATCCACATGC
CATCGCGCATTCCCAAATCCGCACAGCACCTGGTGCGGCATCTTTGCAAG
CAACTGCCGGCGGAAAGACTGGGATATCAGCGCAAGGGAATTGCGGATAT
TAAGCGGCATAGTTGGTTCGAAAGTCTCGACTGGCAGAGACTGAAACTGA
AGCAATTGCCATCGCCCATCAAAAGACCATTGAAGAGTTGGACCGACTTG
CAATATTTTGGTCCTTCGGGTGTTGAGAACGACTATGAGCCACCGGAGGA
ACTGAGCGGATGGGATAAAGACTTTGCAAGCTTTCTAGACCAT

BO11035.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-RA 3012 CG4839-PA 1..3009 17..3025 15030 100 Plus
CG4839-RB 3012 CG4839-PB 1..3009 17..3025 15030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-RA 6512 CG4839-RA 2310..5318 17..3025 15030 100 Plus
CG4839-RB 3982 CG4839-RB 677..3685 17..3025 15030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10150730..10151656 192..1118 4635 100 Plus
2L 23513712 2L 10154700..10155213 2512..3025 2570 100 Plus
2L 23513712 2L 10153862..10154182 1960..2280 1605 100 Plus
2L 23513712 2L 10152951..10153235 1266..1550 1425 100 Plus
2L 23513712 2L 10153560..10153799 1720..1959 1185 99.6 Plus
2L 23513712 2L 10154254..10154487 2281..2514 1170 100 Plus
2L 23513712 2L 10153322..10153492 1550..1720 855 100 Plus
2L 23513712 2L 10152697..10152845 1118..1266 745 100 Plus
2L 23513712 2L 10147085..10147189 17..121 525 100 Plus
2L 23513712 2L 10150337..10150410 121..194 370 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:31:40 has no hits.

BO11035.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:18 Download gff for BO11035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4839-RA 1..3012 17..3029 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:14 Download gff for BO11035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4839-RA 212..3249 4..3039 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:59 Download gff for BO11035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 677..3685 17..3027 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:13 Download gff for BO11035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4839-RA 227..3235 17..3027 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:33 Download gff for BO11035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 677..3685 17..3027 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:33 Download gff for BO11035.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10150338..10150409 122..193 100 -> Plus
2L 10147085..10147189 17..121 100 -> Plus
2L 10150732..10151655 194..1117 100 -> Plus
2L 10152697..10152845 1118..1266 100 -> Plus
2L 10152952..10153235 1267..1550 100 -> Plus
2L 10153323..10153492 1551..1720 100 -> Plus
2L 10153561..10153799 1721..1959 99 -> Plus
2L 10153862..10154182 1960..2280 100 -> Plus
2L 10154254..10154485 2281..2512 100 -> Plus
2L 10154701..10155213 2513..3027 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:59 Download gff for BO11035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10150338..10150409 122..193 100 -> Plus
arm_2L 10147085..10147189 17..121 100 -> Plus
arm_2L 10150732..10151655 194..1117 100 -> Plus
arm_2L 10152697..10152845 1118..1266 100 -> Plus
arm_2L 10152952..10153235 1267..1550 100 -> Plus
arm_2L 10153323..10153492 1551..1720 100 -> Plus
arm_2L 10153561..10153799 1721..1959 99 -> Plus
arm_2L 10153862..10154182 1960..2280 100 -> Plus
arm_2L 10154254..10154485 2281..2512 100 -> Plus
arm_2L 10154701..10155213 2513..3027 99   Plus

BO11035.pep Sequence

Translation from 16 to 3043

> BO11035.pep
MACFPRLFHNRSKNKFTPAEDENTDTILNTQDSNVQIGKYIRREEKPLYS
PIVTPSASEAKLQRLRQQQQPPGSPPAPARWTLHSVAENGSANNGVQERK
FRTNKDKLQAQDACPSGGSAINVIRSSSKLKPVKERRPTALPTEVPSIEI
EDVRDAKDTGDGMDSLGERVQPGANAHVDVVDGGGKSKLKVNVNGIIDES
VAHDDDYDTPSSNSIATTPVTEGPVKFFIGHTQELSAQQTDDTLSCQSSD
ANNNSAAKLTNGVVPQEQPEREMGKQQALQAPPRAKSSSNVSLNYLAKSQ
TDSQRRRRVSTMPDINIPPAPPLPPELLVPGTPLHLRKKRSMERQQQQKQ
QEQQQQQEIQQDATNSQDQMAGAEESHKSSDSSTPKTHRVEGGLIYVRPN
FPIQSDIEIESIAKDEGTRNLIRTAIERNDFLNNLMDKERKEMVINAMAP
ASYRKHSLIIREHEEGSEIYVSAEGQYDVIRGGQLVASFGPATVFGELAI
LYNAPRQASIEAATDARVWKIARETFRAIMQISGSREREENLQFLRSAPF
LQEFDQSLLLKVVDLLQRKFYETDSCIVREGELGNEFYIIRCGTVTIKKL
DEQQQEQIVANRKRGDYFGEQALLNADVRQASVYADAPGTEVLMLDREAF
ISYLGTIKQLREKPSSQRNDTSGRSSTKSLEFDNEYSQVAISELKKIATL
GCGAFGRVDLVAYNQQALALKIIKKIEVVKQDQIEHVYNEKNVMIKCRQS
PFIVQLYRTYRNDKYVYFLMEACMGGDVWTVMSKRQYFDEKTAKFIAGCV
VEAFDYLHSHHFIYRDLKPENLMLGTDGYCKLVDFGFAKFVRQNEKTNTF
AGTPEYVAPEIILDRGHDRAVDYWALGILVYELLVGKTPFRGVNQIKIYQ
QILSGIDVIHMPSRIPKSAQHLVRHLCKQLPAERLGYQRKGIADIKRHSW
FESLDWQRLKLKQLPSPIKRPLKSWTDLQYFGPSGVENDYEPPEELSGWD
KDFASFLDH

BO11035.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-PA 1003 CG4839-PA 1..1003 1..1003 5191 100 Plus
CG4839-PB 1003 CG4839-PB 1..1003 1..1003 5191 100 Plus
Pkg21D-PA 768 CG3324-PA 161..768 407..1003 1329 44.6 Plus
for-PA 1088 CG10033-PA 503..1088 414..1003 1258 42.2 Plus
for-PI 1088 CG10033-PI 503..1088 414..1003 1258 42.2 Plus