Clone Sequence Records
BO11037.3prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-19
> BO11037.3prime
ATGGTCTAGAAAGCTTGCACAATTGCAGTTGGCATTAGGCGTGCCCTGCG
GCTGATCCGTCAACCTCTGGCCCTTCTGGCCACCGCCTACTAACGTCGGA
TCCGCGTCCAGGCTCTCGGACATCTTATCGCAGATGATGTCCACCAAACG
CTCGAAAACAGCCTTGACGTTGACGTTCTCCTTGGCAGAGGTCTCGAAGA
ACTCAACACCCAATTGATCGGCCAACTGGCGACCACGTTCGAAGCTGATT
ACCCGCTGGTCCTCCATGTCGCACTTGTTGCCCACCAGGATCACCTGGGC
ATTGTCCCACGAATACGTTTTGATCTGTGTCACCCAATCCTGAACCGAGT
TAAAACTGTCCTCATTAGTGACATCGTACATTAGGATGAAACCCATCGCT
CCTCGGTAGTAGGCTGTGGTGATAGTTCTGTACCGCTCCTGTCCAGCAGT
GTCCCAGATCTGGAGTTTCACGCGCTTATCGTGCCGAAATACGGTCTTCA
CCTTAAAGTCAATGCCCACCGTGGAGACGAAGGCGGATGTGAAGCTATCG
TCGGCGTAGCGGAAGAGGAAGCTGGTCTTGCCCACGCTGGAGTTGCCAAT
GATGAGCAGCTTGAACATGTAGTCAAAGTTCTGGTCGGCGGCATCCTTCT
GCCACTTGGGGTCTCCGCCACTCGCCATGTCGACTGATAACT
BO11037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7576-PA | 663 | Rab3-RA | 1..660 | 678..19 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-RA | 3757 | CG7576-RA | 620..1279 | 678..19 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10724805..10725030 | 453..678 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 10724013..10724186 | 162..335 | 870 | 100 | Plus |
2R | 25286936 | 2R | 10723813..10723958 | 19..164 | 730 | 100 | Plus |
2R | 25286936 | 2R | 10724248..10724368 | 334..454 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:54:14 has no hits.
BO11037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:27 Download gff for
BO11037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-PA | 1..663 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:15 Download gff for
BO11037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7576-PA | 1..663 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:30:51 Download gff for
BO11037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1287 | 11..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:05 Download gff for
BO11037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1287 | 11..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:05 Download gff for
BO11037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10724249..10724367 | 335..453 | 100 | <- | Plus |
2R | 10723805..10723956 | 11..162 | 97 | <- | Plus |
2R | 10724014..10724185 | 163..334 | 100 | <- | Plus |
2R | 10724806..10725030 | 454..678 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:30:51 Download gff for
BO11037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6611310..6611461 | 11..162 | 97 | <- | Plus |
arm_2R | 6611519..6611690 | 163..334 | 100 | <- | Plus |
arm_2R | 6611754..6611872 | 335..453 | 100 | <- | Plus |
arm_2R | 6612311..6612535 | 454..678 | 100 | | Plus |
BO11037.5prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-19
> BO11037.5prime
GAAGTTATCAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGG
ATGCCGCCGACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGC
AACTCCAGCGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAG
CTTCACATCCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGA
CCGTATTTCGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCT
GGACAGGAGCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGAT
GGGTTTCATCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGG
TTCAGGATTGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAG
GTGATCCTGGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAG
CTTCGAACGTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCG
AGACCTCTGCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTG
GTGGACATCATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGAC
GTTAGTAGGCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGG
GCACGCCTAATGCCAACTGCAATTGTGCAAGCTTTCTAGACC
BO11037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7576-PA | 663 | Rab3-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-RA | 3757 | CG7576-RA | 620..1279 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10724805..10725030 | 242..17 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 10724013..10724186 | 533..360 | 870 | 100 | Minus |
2R | 25286936 | 2R | 10723813..10723958 | 676..531 | 730 | 100 | Minus |
2R | 25286936 | 2R | 10724248..10724368 | 361..241 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:21:52 has no hits.
BO11037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:28 Download gff for
BO11037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-PA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:16 Download gff for
BO11037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7576-PA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:29 Download gff for
BO11037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1287 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:58 Download gff for
BO11037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1287 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:58 Download gff for
BO11037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10723805..10723956 | 533..684 | 97 | <- | Minus |
2R | 10724014..10724185 | 361..532 | 100 | <- | Minus |
2R | 10724249..10724367 | 242..360 | 100 | <- | Minus |
2R | 10724806..10725030 | 17..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:29 Download gff for
BO11037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6611310..6611461 | 533..684 | 97 | <- | Minus |
arm_2R | 6611519..6611690 | 361..532 | 100 | <- | Minus |
arm_2R | 6611754..6611872 | 242..360 | 100 | <- | Minus |
arm_2R | 6612311..6612535 | 17..241 | 100 | | Minus |
BO11037.complete Sequence
694 bp assembled on 2007-10-17
GenBank Submission: FJ631967
> BO11037.complete
GAAGTTATCAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGG
ATGCCGCCGACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGC
AACTCCAGCGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAG
CTTCACATCCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGA
CCGTATTTCGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCT
GGACAGGAGCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGAT
GGGTTTCATCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGG
TTCAGGATTGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAG
GTGATCCTGGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAG
CTTCGAACGTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCG
AGACCTCTGCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTG
GTGGACATCATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGAC
GTTAGTAGGCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGG
GCACGCCTAATGCCAACTGCAATTGTGCAAGCTTTCTAGACCAT
BO11037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-RA | 663 | CG7576-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-RA | 3757 | CG7576-RA | 620..1279 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10724805..10725030 | 242..17 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 10724013..10724186 | 533..360 | 870 | 100 | Minus |
2R | 25286936 | 2R | 10723813..10723958 | 676..531 | 730 | 100 | Minus |
2R | 25286936 | 2R | 10724248..10724368 | 361..241 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:32:35 has no hits.
BO11037.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:19 Download gff for
BO11037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:15 Download gff for
BO11037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 607..1274 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:56 Download gff for
BO11037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1279 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:28 Download gff for
BO11037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 607..1266 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:23 Download gff for
BO11037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1279 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:23 Download gff for
BO11037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10723811..10723956 | 533..678 | 98 | <- | Minus |
2R | 10724014..10724185 | 361..532 | 100 | <- | Minus |
2R | 10724249..10724367 | 242..360 | 100 | <- | Minus |
2R | 10724806..10725030 | 17..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:56 Download gff for
BO11037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6611316..6611461 | 533..678 | 98 | <- | Minus |
arm_2R | 6611519..6611690 | 361..532 | 100 | <- | Minus |
arm_2R | 6611754..6611872 | 242..360 | 100 | <- | Minus |
arm_2R | 6612311..6612535 | 17..241 | 100 | | Minus |
BO11037.pep Sequence
Translation from 16 to 694
> BO11037.pep
MASGGDPKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF
VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM
YDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGR
QLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGG
QKGQRLTDQPQGTPNANCNCASFLDH
BO11037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-PA | 220 | CG7576-PA | 1..220 | 1..220 | 1158 | 100 | Plus |
Rab10-PA | 204 | CG17060-PA | 2..175 | 14..187 | 531 | 54 | Plus |
Rab8-PC | 207 | CG8287-PC | 3..188 | 16..201 | 520 | 50 | Plus |
Rab8-PA | 207 | CG8287-PA | 3..188 | 16..201 | 520 | 50 | Plus |
Rab1-PA | 205 | CG3320-PA | 3..165 | 13..175 | 467 | 49.1 | Plus |