Clone BO11037 Report

Search the DGRC for BO11037

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptRab3-RA
Protein status:BO11037.pep: validated full length
Sequenced Size:694

Clone Sequence Records

BO11037.3prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-19

> BO11037.3prime
ATGGTCTAGAAAGCTTGCACAATTGCAGTTGGCATTAGGCGTGCCCTGCG
GCTGATCCGTCAACCTCTGGCCCTTCTGGCCACCGCCTACTAACGTCGGA
TCCGCGTCCAGGCTCTCGGACATCTTATCGCAGATGATGTCCACCAAACG
CTCGAAAACAGCCTTGACGTTGACGTTCTCCTTGGCAGAGGTCTCGAAGA
ACTCAACACCCAATTGATCGGCCAACTGGCGACCACGTTCGAAGCTGATT
ACCCGCTGGTCCTCCATGTCGCACTTGTTGCCCACCAGGATCACCTGGGC
ATTGTCCCACGAATACGTTTTGATCTGTGTCACCCAATCCTGAACCGAGT
TAAAACTGTCCTCATTAGTGACATCGTACATTAGGATGAAACCCATCGCT
CCTCGGTAGTAGGCTGTGGTGATAGTTCTGTACCGCTCCTGTCCAGCAGT
GTCCCAGATCTGGAGTTTCACGCGCTTATCGTGCCGAAATACGGTCTTCA
CCTTAAAGTCAATGCCCACCGTGGAGACGAAGGCGGATGTGAAGCTATCG
TCGGCGTAGCGGAAGAGGAAGCTGGTCTTGCCCACGCTGGAGTTGCCAAT
GATGAGCAGCTTGAACATGTAGTCAAAGTTCTGGTCGGCGGCATCCTTCT
GCCACTTGGGGTCTCCGCCACTCGCCATGTCGACTGATAACT

BO11037.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7576-PA 663 Rab3-RA 1..660 678..19 3300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 3757 CG7576-RA 620..1279 678..19 3300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10724805..10725030 453..678 1130 100 Plus
2R 25286936 2R 10724013..10724186 162..335 870 100 Plus
2R 25286936 2R 10723813..10723958 19..164 730 100 Plus
2R 25286936 2R 10724248..10724368 334..454 605 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:54:14 has no hits.

BO11037.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:27 Download gff for BO11037.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-PA 1..663 18..678 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:15 Download gff for BO11037.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7576-PA 1..663 18..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:30:51 Download gff for BO11037.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1287 11..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:05 Download gff for BO11037.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1287 11..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:05 Download gff for BO11037.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10724249..10724367 335..453 100 <- Plus
2R 10723805..10723956 11..162 97 <- Plus
2R 10724014..10724185 163..334 100 <- Plus
2R 10724806..10725030 454..678 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:30:51 Download gff for BO11037.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6611310..6611461 11..162 97 <- Plus
arm_2R 6611519..6611690 163..334 100 <- Plus
arm_2R 6611754..6611872 335..453 100 <- Plus
arm_2R 6612311..6612535 454..678 100   Plus

BO11037.5prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-19

> BO11037.5prime
GAAGTTATCAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGG
ATGCCGCCGACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGC
AACTCCAGCGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAG
CTTCACATCCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGA
CCGTATTTCGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCT
GGACAGGAGCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGAT
GGGTTTCATCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGG
TTCAGGATTGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAG
GTGATCCTGGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAG
CTTCGAACGTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCG
AGACCTCTGCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTG
GTGGACATCATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGAC
GTTAGTAGGCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGG
GCACGCCTAATGCCAACTGCAATTGTGCAAGCTTTCTAGACC

BO11037.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7576-PA 663 Rab3-RA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 3757 CG7576-RA 620..1279 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10724805..10725030 242..17 1130 100 Minus
2R 25286936 2R 10724013..10724186 533..360 870 100 Minus
2R 25286936 2R 10723813..10723958 676..531 730 100 Minus
2R 25286936 2R 10724248..10724368 361..241 605 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:21:52 has no hits.

BO11037.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:28 Download gff for BO11037.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-PA 1..663 17..677 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:16 Download gff for BO11037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7576-PA 1..663 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:29 Download gff for BO11037.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1287 17..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:58 Download gff for BO11037.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1287 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:58 Download gff for BO11037.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10723805..10723956 533..684 97 <- Minus
2R 10724014..10724185 361..532 100 <- Minus
2R 10724249..10724367 242..360 100 <- Minus
2R 10724806..10725030 17..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:29 Download gff for BO11037.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6611310..6611461 533..684 97 <- Minus
arm_2R 6611519..6611690 361..532 100 <- Minus
arm_2R 6611754..6611872 242..360 100 <- Minus
arm_2R 6612311..6612535 17..241 100   Minus

BO11037.complete Sequence

694 bp assembled on 2007-10-17

GenBank Submission: FJ631967

> BO11037.complete
GAAGTTATCAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGG
ATGCCGCCGACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGC
AACTCCAGCGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAG
CTTCACATCCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGA
CCGTATTTCGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCT
GGACAGGAGCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGAT
GGGTTTCATCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGG
TTCAGGATTGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAG
GTGATCCTGGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAG
CTTCGAACGTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCG
AGACCTCTGCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTG
GTGGACATCATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGAC
GTTAGTAGGCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGG
GCACGCCTAATGCCAACTGCAATTGTGCAAGCTTTCTAGACCAT

BO11037.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 663 CG7576-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 3757 CG7576-RA 620..1279 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10724805..10725030 242..17 1130 100 Minus
2R 25286936 2R 10724013..10724186 533..360 870 100 Minus
2R 25286936 2R 10723813..10723958 676..531 730 100 Minus
2R 25286936 2R 10724248..10724368 361..241 605 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:32:35 has no hits.

BO11037.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:19 Download gff for BO11037.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..663 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:15 Download gff for BO11037.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 607..1274 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:56 Download gff for BO11037.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1279 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:28 Download gff for BO11037.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 607..1266 17..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:23 Download gff for BO11037.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1279 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:23 Download gff for BO11037.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10723811..10723956 533..678 98 <- Minus
2R 10724014..10724185 361..532 100 <- Minus
2R 10724249..10724367 242..360 100 <- Minus
2R 10724806..10725030 17..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:56 Download gff for BO11037.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6611316..6611461 533..678 98 <- Minus
arm_2R 6611519..6611690 361..532 100 <- Minus
arm_2R 6611754..6611872 242..360 100 <- Minus
arm_2R 6612311..6612535 17..241 100   Minus

BO11037.pep Sequence

Translation from 16 to 694

> BO11037.pep
MASGGDPKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF
VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM
YDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGR
QLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGG
QKGQRLTDQPQGTPNANCNCASFLDH

BO11037.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-PA 220 CG7576-PA 1..220 1..220 1158 100 Plus
Rab10-PA 204 CG17060-PA 2..175 14..187 531 54 Plus
Rab8-PC 207 CG8287-PC 3..188 16..201 520 50 Plus
Rab8-PA 207 CG8287-PA 3..188 16..201 520 50 Plus
Rab1-PA 205 CG3320-PA 3..165 13..175 467 49.1 Plus