Clone Sequence Records
BO11038.3prime Sequence
838 bp (808 high quality bases) assembled on 2006-04-19
> BO11038.3prime
ATGGTCTAGAAAGCTTGCGGAGTGCTTGTCAGTCAGTTCACCCCAGCGGG
ACTCGAAGAACTTGCGCATGCCGTGGCCTGCCTTGCCAACGGGCGAATCG
TCCTCGTTAAACATCTCGCAATTATCGAAGATCTGACGCACGTCCACGCA
GAAGTCCTCACGGGTTTTGTAGCTCAAATCTTGCAATTTCTTTTTGATTG
TGGACAAGTCCATGGGAGTTTTGATTATTTTTCGATATGTGGGAAACTGC
TTGGTGTTTACTGGCAAAAGAAATGGCCACGAGTCCTCATGAAGCTCCAT
TTCCCCCAATAGCGTCTTGCAGACAGCCAGCTCCTTCATGAGCTTCTTGG
TGGCGTGCTTCTCCTTCTTCTCCTGCTTCAGCTTCTCCTTGGCTTCCTGA
ATGGCATGTATGTTGATGGGCGGTGGCGACATTTGGTTAGTGGCCGTTCC
GACTCCAATGGCTGGTGGCGAGGGCATGGTCATCAGCTGCGCATGCTGTT
GTTGGGGCGGTGACTGGCAGGCGTTTACATGGAGGGCGGTGGCTGTGGGC
GAGGCCTGCATTAGCAGCGGTGTCGGCGGTGGTGGTGGCGGAGTGGGTGC
TGGCGTCGGTGTGGGCGTTCGGGTGCGGGTGGGCGTGACAGCCCGTGGCG
ACATGGCGACCACGTTGGCAAACGGCATCGCTGGCTGCACCGGCGCTTGG
TTAATCAATCCGGCTGAGAAGTTGCCAGCCGCAACTGGCGTATAAACTGG
ATAGACGCCGGGCATCACATTGGCGCCACCCGGCACATCTTCCAGCAGAG
CCGCAGTGCCATTATTTGACGGGGGAATGAGATGCGCG
BO11038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10897-PA | 9243 | tou-RA | 8421..9240 | 838..19 | 4100 | 100 | Minus |
| CG10897-PC | 2052 | tou-RC | 1230..2049 | 838..19 | 4100 | 100 | Minus |
| CG10897-PD | 1383 | tou-RD | 561..1380 | 838..19 | 4100 | 100 | Minus |
| CG10897-PB | 750 | tou-RB | 1..747 | 765..19 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RG | 10721 | CG10897-RG | 8952..9771 | 838..19 | 4100 | 100 | Minus |
| tou-RF | 11743 | CG10897-RF | 8579..9398 | 838..19 | 4100 | 100 | Minus |
| tou-RE | 10866 | CG10897-RE | 9097..9916 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11580235..11580778 | 295..838 | 2720 | 100 | Plus |
| 2R | 25286936 | 2R | 11579830..11579985 | 19..174 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 11580049..11580172 | 173..296 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:32:23 has no hits.
BO11038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:29 Download gff for
BO11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-PA | 8421..9243 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:17 Download gff for
BO11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10897-PD | 561..1383 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:57:20 Download gff for
BO11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RE | 9097..9923 | 12..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:52 Download gff for
BO11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RE | 9097..9923 | 12..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:52 Download gff for
BO11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11579823..11579983 | 12..172 | 97 | <- | Plus |
| 2R | 11580049..11580170 | 173..294 | 100 | <- | Plus |
| 2R | 11580235..11580778 | 295..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:57:20 Download gff for
BO11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7467328..7467488 | 12..172 | 97 | <- | Plus |
| arm_2R | 7467554..7467675 | 173..294 | 100 | <- | Plus |
| arm_2R | 7467740..7468283 | 295..838 | 100 | | Plus |
BO11038.5prime Sequence
858 bp (731 high quality bases) assembled on 2006-04-19
> BO11038.5prime
GAAGTTATCAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAA
ATATCGAAAGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGAT
GCCCATTTGGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCA
GAACTCTGCATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGC
AGCAACAGCAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGT
GCGGGAAATAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATT
GGCGGCGGCAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCA
ACTCGGCAGTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAA
CCGAATTCCGGCAACGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGA
CGAGAAGGTGGAGCAGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAG
TATCCCGATCGCACACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTG
GAATCCTGCGTGGCTTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTT
CTGCACGTCCGGCGAAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTG
ACAAGGGCTATCACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCC
GATGGCGATTGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCG
CAAGTGCATCGTTTGCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGA
TCTACTGTGACTTGTGTCCTCGTGCCTACCACGCCGATTGCTATATACCG
CCGCTGCT
BO11038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10897-PC | 2052 | tou-RC | 1..842 | 17..858 | 4210 | 100 | Plus |
| CG10897-PA | 9243 | tou-RA | 6795..7368 | 16..589 | 2870 | 100 | Plus |
| CG10897-PA | 9243 | tou-RA | 7764..8033 | 589..858 | 1350 | 100 | Plus |
| CG10897-PD | 1383 | tou-RD | 1..173 | 686..858 | 865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RA | 10470 | CG10897-RA | 7471..8313 | 16..858 | 4215 | 100 | Plus |
| tou-RG | 10721 | CG10897-RG | 7326..7899 | 16..589 | 2870 | 100 | Plus |
| tou-RF | 11743 | CG10897-RF | 6953..7526 | 16..589 | 2870 | 100 | Plus |
| tou-RG | 10721 | CG10897-RG | 8295..8564 | 589..858 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11583015..11583588 | 589..16 | 2870 | 100 | Minus |
| 2R | 25286936 | 2R | 11581252..11581399 | 858..711 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 11581626..11581750 | 713..589 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:37:21 has no hits.
BO11038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:30 Download gff for
BO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-PC | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:18 Download gff for
BO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10897-PC | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:58 Download gff for
BO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7463..8313 | 7..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:23:34 Download gff for
BO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7463..8313 | 7..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:23:34 Download gff for
BO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11581252..11581398 | 712..858 | 100 | <- | Minus |
| 2R | 11581628..11581749 | 590..711 | 100 | <- | Minus |
| 2R | 11583015..11583596 | 7..589 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:58 Download gff for
BO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7468757..7468903 | 712..858 | 100 | <- | Minus |
| arm_2R | 7469133..7469254 | 590..711 | 100 | <- | Minus |
| arm_2R | 7470520..7471101 | 7..589 | 99 | | Minus |
BO11038.complete Sequence
2083 bp (2083 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631968
> BO11038.complete
GAAGTTATCAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAA
ATATCGAAAGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGAT
GCCCATTTGGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCA
GAACTCTGCATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGC
AGCAACAGCAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGT
GCGGGAAATAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATT
GGCGGCGGCAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCA
ACTCGGCAGTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAA
CCGAATTCCGGCAACGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGA
CGAGAAGGTGGAGCAGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAG
TATCCCGATCGCACACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTG
GAATCCTGCGTGGCTTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTT
CTGCACGTCCGGCGAAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTG
ACAAGGGCTATCACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCC
GATGGCGATTGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCG
CAAGTGCATCGTTTGCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGA
TCTACTGTGACTTGTGTCCTCGTGCCTACCACGCCGATTGCTATATACCG
CCGCTGCTAAAGGTACCGCGTGGCAAGTGGTACTGCCACGGTTGCATCTC
CCGGGCGCCTCCGCCGAAGAAAAGAAGTGCAGGTGGAACATCCGGCAGCA
GCAGCAAATCTAGGAGGGACAGGGATAGGGAGTCGGGCGGATCGGCCAAG
CGGCGTAGCGACAACAGCAAGACACCAGCCATGGAGCACATGCAGCAGCA
GCAGATGCCACTGGCAGGCGGGGATTCCCACCATCATCATCATCAGCAGC
CGCCGTCGCTGAACTCCTCGCACGATGAGTCGATGAATTCTCTGCCGGCG
GCTCCTCTGAGTCCGGCGCACTCGGTGGTCTCGGCCACGAACTACGATGA
CCAGCACCATGCCAACAACTCGGTCGATGGCAGCAGTCGCTTCCACGCGC
ATCTCATTCCCCCGTCAAATAATGGCACTGCGGCTCTGCTGGAAGATGTG
CCGGGTGGCGCCAATGTGATGCCCGGCGTCTATCCAGTTTATACGCCAGT
TGCGGCTGGCAACTTCTCAGCCGGATTGATTAACCAAGCGCCGGTGCAGC
CAGCGATGCCGTTTGCCAACGTGGTCGCCATGTCGCCACGGGCTGTCACG
CCCACCCGCACCCGAACGCCCACACCGACGCCAGCACCCACTCCGCCACC
ACCACCGCCGACACCGCTGCTAATGCAGGCCTCGCCCACAGCCACCGCCC
TCCATGTAAACGCCTGCCAGTCACCGCCCCAACAACAGCATGCGCAGCTG
ATGACCATGCCCTCGCCACCAGCCATTGGAGTCGGAACGGCCACTAACCA
AATGTCGCCACCGCCCATCAACATACATGCCATTCAGGAAGCCAAGGAGA
AGCTGAAGCAGGAGAAGAAGGAGAAGCACGCCACCAAGAAGCTCATGAAG
GAGCTGGCTGTCTGCAAGACGCTATTGGGGGAAATGGAGCTTCATGAGGA
CTCGTGGCCATTTCTTTTGCCAGTAAACACCAAGCAGTTTCCCACATATC
GAAAAATAATCAAAACTCCCATGGACTTGTCCACAATCAAAAAGAAATTG
CAAGATTTGAGCTACAAAACCCGTGAGGACTTCTGCGTGGACGTGCGTCA
GATCTTCGATAATTGCGAGATGTTTAACGAGGACGATTCGCCCGTTGGCA
AGGCAGGCCACGGCATGCGCAAGTTCTTCGAGTCCCGCTGGGGTGAACTG
ACTGACAAGCACTCCGCAAGCTTTCTAGACCAT
BO11038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RA | 9000 | CG10897-PA | 6948..8997 | 16..2065 | 10250 | 100 | Plus |
| tou-RG | 9285 | CG10897-PG | 7806..9282 | 589..2065 | 7385 | 100 | Plus |
| tou-RF | 9177 | CG10897-PF | 7698..9174 | 589..2065 | 7385 | 100 | Plus |
| tou-RG | 9285 | CG10897-PG | 6837..7410 | 16..589 | 2870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RA | 10470 | CG10897-RA | 7471..9520 | 16..2065 | 10250 | 100 | Plus |
| tou-RG | 10721 | CG10897-RG | 8295..9771 | 589..2065 | 7385 | 100 | Plus |
| tou-RF | 11743 | CG10897-RF | 7922..9398 | 589..2065 | 7385 | 100 | Plus |
| tou-RG | 10721 | CG10897-RG | 7326..7899 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11580235..11580864 | 1789..1160 | 3150 | 100 | Minus |
| 2R | 25286936 | 2R | 11583015..11583588 | 589..16 | 2870 | 100 | Minus |
| 2R | 25286936 | 2R | 11580949..11581399 | 1161..711 | 2255 | 100 | Minus |
| 2R | 25286936 | 2R | 11579830..11579985 | 2065..1910 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 11581626..11581750 | 713..589 | 625 | 100 | Minus |
| 2R | 25286936 | 2R | 11580049..11580172 | 1911..1788 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:39:27 has no hits.
BO11038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:49 Download gff for
BO11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 6940..9000 | 7..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:43 Download gff for
BO11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RC | 62..2126 | 7..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:41 Download gff for
BO11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7472..9520 | 17..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:49 Download gff for
BO11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RC | 62..2126 | 7..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:33 Download gff for
BO11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7472..9520 | 17..2067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:33 Download gff for
BO11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11581628..11581749 | 590..711 | 100 | <- | Minus |
| 2R | 11579827..11579983 | 1912..2067 | 98 | <- | Minus |
| 2R | 11580049..11580170 | 1790..1911 | 100 | <- | Minus |
| 2R | 11580235..11580862 | 1162..1789 | 100 | <- | Minus |
| 2R | 11580949..11581398 | 712..1161 | 100 | <- | Minus |
| 2R | 11583015..11583587 | 17..589 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:41 Download gff for
BO11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7467332..7467488 | 1912..2067 | 98 | <- | Minus |
| arm_2R | 7467554..7467675 | 1790..1911 | 100 | <- | Minus |
| arm_2R | 7467740..7468367 | 1162..1789 | 100 | <- | Minus |
| arm_2R | 7468454..7468903 | 712..1161 | 100 | <- | Minus |
| arm_2R | 7469133..7469254 | 590..711 | 100 | <- | Minus |
| arm_2R | 7470520..7471092 | 17..589 | 100 | | Minus |
BO11038.pep Sequence
Translation from 16 to 2083
> BO11038.pep
MIRERIIDLEANIERRYLKPPLGSQTGDAHLAVIAQNQHTTTQTQNSASA
AAYLLQMQQQQQQQQLAQQQQQQQQGSGAGNSLNPSSFNERTMALAAAAA
ASGPGNATGVANSAVVAGATPCESGSGEPNSGNASPASNCDSDRDEKVEQ
IPKGLVQWRDAVSRSHTTAQLAMALYVLESCVAWDKSIMKANCQFCTSGE
NEDKLLLCDGCDKGYHTYCFKPKMDNIPDGDWYCYECVNKATNERKCIVC
GGHRPSPVGKMIYCDLCPRAYHADCYIPPLLKVPRGKWYCHGCISRAPPP
KKRSAGGTSGSSSKSRRDRDRESGGSAKRRSDNSKTPAMEHMQQQQMPLA
GGDSHHHHHQQPPSLNSSHDESMNSLPAAPLSPAHSVVSATNYDDQHHAN
NSVDGSSRFHAHLIPPSNNGTAALLEDVPGGANVMPGVYPVYTPVAAGNF
SAGLINQAPVQPAMPFANVVAMSPRAVTPTRTRTPTPTPAPTPPPPPPTP
LLMQASPTATALHVNACQSPPQQQHAQLMTMPSPPAIGVGTATNQMSPPP
INIHAIQEAKEKLKQEKKEKHATKKLMKELAVCKTLLGEMELHEDSWPFL
LPVNTKQFPTYRKIIKTPMDLSTIKKKLQDLSYKTREDFCVDVRQIFDNC
EMFNEDDSPVGKAGHGMRKFFESRWGELTDKHSASFLDH
BO11038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-PA | 2999 | CG10897-PA | 2317..2999 | 1..683 | 3670 | 100 | Plus |
| tou-PG | 3094 | CG10897-PG | 2473..3094 | 42..683 | 2710 | 80.4 | Plus |
| tou-PF | 3058 | CG10897-PF | 2437..3058 | 42..683 | 2710 | 80.4 | Plus |
| tou-PE | 3131 | CG10897-PE | 2510..3131 | 42..683 | 2710 | 80.4 | Plus |
| tou-PB | 249 | CG10897-PB | 1..249 | 435..683 | 1332 | 100 | Plus |
| tou-PG | 3094 | CG10897-PG | 2280..2612 | 1..354 | 975 | 61.3 | Plus |
| tou-PF | 3058 | CG10897-PF | 2244..2576 | 1..354 | 975 | 61.3 | Plus |
| tou-PE | 3131 | CG10897-PE | 2317..2649 | 1..354 | 975 | 61.3 | Plus |
