Clone Sequence Records
BO11044.3prime Sequence
847 bp (781 high quality bases) assembled on 2006-04-19
> BO11044.3prime
ATGGTCTAGAAAGCTTGCAATTTCATTTAACTTAAATCTCGCATTAATGT
TGACCGAACTCAATTCGGTAACCAGATACTTAAAAGAGAATGGTATCTCG
ATCATCGATACAGAACTGTTATCCCCGCACAAGCGACACGTATCTGGCTG
AGAAGAGAGTCCTCCCGTCTCATTTCGCTTAACAATGCGTTGCAGAGGCG
CCAGAATGGAGCCGCACTTGTGGCACACCAGGGTGTGCGTCTTATCGGAG
TTGTGGAACAAGCGATCCTGCAGCAGGAAAGCAGCACCGTGAGAGATCAA
AGCATCCCGTTCCATCTCACCGAATCTGACGCCTCCACCGCGTTTTCTGC
CCTTAATTGGCTGATGGGTCCGAGCTTCCACCGCTCCCGTAGATCTTACT
TGCCACTTGTCAAACACCATGTGCCGAAGACGCTGGTAATGCACCACTCC
AAAAAATATGTCAGCAGTCATCTCGCGGCCATCTACGCCGGAATACAGCC
TCTCCGTTCCGTAGTAATTGTAACCCCCAGCCTCTAACATTTTGCCAAAA
TAGTCAATAGCAGTATTCTCTTCGGAGAAGCGAAAAGGCGTGGCATCGTA
AACATTTCCGTGGATTGCAGCCCCCTTTCCCGCCATCGTTTCTATCATCA
TGGCGATTGTCATTCGGGAGGGGAAGCCGTGGGGATTGAACACAATGTCT
GGAATCAAACCAGATTCCGTAAATGGCAAGTCCTCTGCAGGATATTTTTG
TGAGCAAATTCCTTTCTGACCAGCTCTTGATGCAAACTTGTCTCCAATAG
TGGCAGGTCGTGGAACCCTCAGTGTGATGGCCACCATTTTTTTTGGC
BO11044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4033-PA | 3390 | RpI135-RA | 2559..3387 | 847..19 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3564 | CG4033-RA | 2658..3486 | 847..19 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 407063..407891 | 847..19 | 4145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:30:35 has no hits.
BO11044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:41 Download gff for
BO11044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 2559..3390 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:34 Download gff for
BO11044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 2559..3390 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:42 Download gff for
BO11044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 2658..3486 | 19..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:30 Download gff for
BO11044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 2658..3486 | 19..847 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:30 Download gff for
BO11044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 407063..407891 | 19..847 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:42 Download gff for
BO11044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 407063..407891 | 19..847 | 100 | | Minus |
BO11044.5prime Sequence
912 bp (871 high quality bases) assembled on 2006-04-19
> BO11044.5prime
GAAGTTATCAGTCGACATGCTGGAGGAGATGCAACAAATGAAGACCATTC
CAGTGCTGACCAATTCCCGCCCGGAGTTTAAGCAGATACCTAAAAAACTC
AGCAGGCATTTGGCCAATTTGGGAGGTCCACATGTGGATTCCTTCGACGA
GATGCTGACCGTGGGACTGGATAACTCGGCCAAACACATGATCCCGAACC
ACTGGCTGAGTCCTGCCGGCGAAAAGATTTCAATGAAAGTAGAATCAATA
TGGATAGCGAAGCCAAAGGTGCCGCAAGATGTGATTGATGTGCGCACCCG
AGAGATTTACCCCACGGACTCCAGGCAGCTCCATGTCTCCTACTCGGGAA
TGTGCTCGGTCCGATTGGGGTGGAGTGTCAATGGAGTGCAAAAGACTCCC
ATAAACATGGACCTAGGAGAAGTGCCCATCATGTTGCGCTCCAAAGCCTG
CAATCTGGGACAGGCTACTCCGGAAGAAATGGTAAAACATGGAGAGCACG
ACAGCGAGTGGGGGGGCATTTTTGTGATCCGAGGAAATGAGAAGATTGTA
CGTATGTTGATCATGACCCGGAGGAACCATCCCATATGTGTAAAACGTTC
ATCCTGGAAGGATCGTGGACAGAATTTTAGCGATTTGGGTATGTTAGTGC
AAACGGTCCGTGAGGACGAATCATCCCTGAGCAATGTAGTACATTATTTA
AACAATGGAACTGCAAAGTTTATGTTTTCTCACGTCAAGAGACTATCATA
CGTACCAGTTTGCCTGATCCTCAAGTGCCTAATGGATTATACAGATGAGG
AAATATACAACAGATTGGTGCAAGGCTACGAGTCCGACCAGTACTATGTG
TCCTGCGTGCAAGCCATGTTGAGGAAAGTTCAAATGAAAACGTCTATACG
CACGCCCAGTGC
BO11044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4033-PA | 3390 | RpI135-RA | 1..868 | 17..884 | 4315 | 99.8 | Plus |
| CG4033-PA | 3390 | RpI135-RA | 867..897 | 882..912 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3564 | CG4033-RA | 98..996 | 15..912 | 4455 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 404535..405342 | 106..912 | 3975 | 99.8 | Plus |
| 2L | 23513712 | 2L | 404382..404473 | 15..106 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:37:53 has no hits.
BO11044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:42 Download gff for
BO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:36 Download gff for
BO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:02 Download gff for
BO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 98..996 | 15..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:23:37 Download gff for
BO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 98..996 | 15..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:23:37 Download gff for
BO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 404382..404473 | 15..106 | 100 | -> | Plus |
| 2L | 404536..405342 | 107..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:02 Download gff for
BO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 404536..405342 | 107..912 | 99 | | Plus |
| arm_2L | 404382..404473 | 15..106 | 100 | -> | Plus |
BO11044.complete Sequence
3421 bp (3421 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631970
> BO11044.complete
GAAGTTATCAGTCGACATGCTGGAGGAGATGCAACAAATGAAGACCATTC
CAGTGCTGACCAATTCCCGCCCGGAGTTTAAGCAGATACCTAAAAAACTC
AGCAGGCATTTGGCCAATTTGGGAGGTCCACATGTGGATTCCTTCGACGA
GATGCTGACCGTGGGACTGGATAACTCGGCCAAACACATGATCCCGAACC
ACTGGCTGAGTCCTGCCGGCGAAAAGATTTCAATGAAAGTAGAATCAATA
TGGATAGCGAAGCCAAAGGTGCCGCAAGATGTGATTGATGTGCGCACCCG
AGAGATTTACCCCACGGACTCCAGGCAGCTCCATGTCTCCTACTCGGGAA
TGTGCTCGGTCCGATTGGGGTGGAGTGTCAATGGAGTGCAAAAGACTCCC
ATAAACATGGACCTAGGAGAAGTGCCCATCATGTTGCGCTCCAAAGCCTG
CAATCTGGGACAGGCTACTCCGGAAGAAATGGTAAAACATGGAGAGCACG
ACAGCGAGTGGGGGGGCATTTTTGTGATCCGAGGAAATGAGAAGATTGTA
CGTATGTTGATCATGACCCGGAGGAACCATCCCATATGTGTAAAACGTTC
ATCCTGGAAGGATCGTGGACAGAATTTTAGCGATTTGGGTATGTTAGTGC
AAACGGTCCGTGAGGACGAATCATCCCTGAGCAATGTAGTACATTATTTA
AACAATGGAACTGCAAAGTTTATGTTTTCTCACGTCAAGAGACTATCATA
CGTACCAGTTTGCCTGATCCTCAAGTGCCTAATGGATTATACAGATGAGG
AAATATACAACAGATTGGTGCAAGGCTACGAGTCCGACCAGTACTATGTG
TCCTGCGTGCAAGCCATGTTGAGGGAAGTTCAAAATGAAAACGTCTATAC
GCACGCCCAGTGCAAGAGCTTCATTGGCAATCTGTTCCGTGCCCGCTTCC
CAGAAGTTCCGGAATGGCAACCGGATGATGATGTCACAGACTTTATTCTT
AGGGAGCGAGTAATGATTCACCTGGATACCTATGAGGATAAGTTCCAGTT
GATTGTGTTTATGATTCAGAAGCTTTTCCAATGCGCACAGGGCAAGTACA
AAGTGGAGAACGTCGACTCAGCTATGATGCAGGAAGTGCTTCTGCCAGGC
CATCTCTATCAGAAATACCTAAGTGAGCGAGTCGAATCCTGGGTCTCGCA
AGTCCGACGTTGCCTTCAAAAAAAACTGACTTCACCTGATGCCCTAGTTA
CCAGTGCTGTGATGACGCAGTGCATGCGACAAGCAGGAGGAGTTGGCCGG
GCCATAGAGTCGTTTTTAGCAACTGGAAATATTGCGAGTCGCACTGGCCT
GGGATTAATGCAAAATAGCGGATTAGTCATTATGGCGGAGAACATTAACA
GGATGCGTTACATGTCCCACTTTCGCGCCATCCACCGTGGTTCCTATTTT
ACAACGATGAGAACCACTGAGGCGCGGCAGCTGCTCCCGGATGCCTGGGG
TTTTATTTGCCCAGTGCACACTCCTGATGGCACACCGTGCGGACTGTTAA
ATCATTTGACTCTAACTTGCGAGATTTCGATGCGTCCCGATCCCAAGTTG
GTGAAGGCCATTCCCAAGCATCTTATAGATATGGGCATGATGCCCTTGTC
AAACCGAAGATATTTGGGCGAAAAACTTTACGTCGTCTTCCTAGATGGCA
AACACTTGGGTCACATTCATCAATCAGAAGCCGAAAAAATAGTTGACGAA
TTGCGCTACGGGAAGATATTCGGCACCCTTCCCCAGATGATGGAAATCGG
CTTTATACCCTTCAAGAAGAACGGTCAGTTTCCAGGGCTTTACATTGCAA
CGGGTCCTGCCAGGATGATGAGGCCCGTTTGGAACCTAAAGTGGAAAAGG
GTGGAGTACATCGGAACACTGGAACAGCTTTATATGGAGATCGCCATCGA
TGCAAAGGAAATGTATCCTGACTTCACCACTCATTTGGAGTTGGCTAAGA
CCCACTTCATGAGCAACTTGGCCAACTTGATACCCATGCCGGACTACAAT
CAATCGCCACGTAACATGTACCAGTGTCAGATGGGAAAACAGACGATGGG
AACGCCATGCTTGAATTGGCCTAAGCAAGCGGCCAACAAGTTATACCGCC
TTCAGACGCCAGGGACTCCTCTCTTCCGACCAGTACACTACGACAACATC
CAGCTGGATGACTTTGCAATGGGCACAAATGCTATTGTAGCTGTCATTTC
CTACACGGGCTACGACATGGAAGATGCTATGATCATCAACAAGGCTGCTT
ATGAACGAGGATTCGCCTATGGAAGTATCTACAAAACAAAGTTTTTGACG
TTGGACAAGAAGAGCAGTTACTTCGCAAGGCATCCACACATGCCGGAGTT
AATAAAGCATCTTGACACGGATGGTCTTCCACATCCGGGCTCCAAATTGA
GCTATGGTTCGCCCCTGTACTGTTACTTTGACGGAGAGGTCGCCACTTAT
AAAGTTGTGAAAATGGATGAAAAGGAGGATTGCATAGTAGAGAGCATCCG
ACAGTTGGGAAGCTTCGATTTGTCGCCAAAAAAAATGGTGGCCATCACAC
TGAGGGTTCCACGACCTGCCACTATTGGAGACAAGTTTGCATCAAGAGCT
GGTCAGAAAGGAATTTGCTCACAAAAATATCCTGCAGAGGACTTGCCATT
TACGGAATCTGGTTTGATTCCAGACATTGTGTTCAATCCCCACGGCTTCC
CCTCCCGAATGACAATCGCCATGATGATAGAAACGATGGCGGGAAAGGGG
GCTGCAATCCACGGAAATGTTTACGATGCCACGCCTTTTCGCTTCTCCGA
AGAGAATACTGCTATTGACTATTTTGGCAAAATGTTAGAGGCTGGGGGTT
ACAATTACTACGGAACGGAGAGGCTGTATTCCGGCGTAGATGGCCGCGAG
ATGACTGCTGACATATTTTTTGGAGTGGTGCATTACCAGCGTCTTCGGCA
CATGGTGTTTGACAAGTGGCAAGTAAGATCTACGGGAGCGGTGGAAGCTC
GGACCCATCAGCCAATTAAGGGCAGAAAACGCGGTGGAGGCGTCAGATTC
GGTGAGATGGAACGGGATGCTTTGATCTCTCACGGTGCTGCTTTCCTGCT
GCAGGATCGCTTGTTCCACAACTCCGATAAGACGCACACCCTGGTGTGCC
ACAAGTGCGGCTCCATTCTGGCGCCTCTGCAACGCATTGTTAAGCGAAAT
GAGACGGGAGGACTCTCTTCTCAGCCAGATACGTGTCGCTTGTGCGGGGA
TAACAGTTCTGTATCGATGATCGAGATACCATTCTCTTTTAAGTATCTGG
TTACCGAATTGAGTTCGGTCAACATTAATGCGAGATTTAAGTTAAATGAA
ATTGCAAGCTTTCTAGACCAT
BO11044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3390 | CG4033-PA | 1..3387 | 17..3403 | 16920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3564 | CG4033-RA | 98..3486 | 15..3403 | 16930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 406093..407891 | 1605..3403 | 8995 | 100 | Plus |
| 2L | 23513712 | 2L | 404535..406036 | 106..1607 | 7495 | 99.9 | Plus |
| 2L | 23513712 | 2L | 404382..404473 | 15..106 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:38:13 has no hits.
BO11044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:34 Download gff for
BO11044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 1..3390 | 17..3406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:23 Download gff for
BO11044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 97..3485 | 15..3403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:36 Download gff for
BO11044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 100..3486 | 17..3405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:35 Download gff for
BO11044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 97..3485 | 15..3403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:19 Download gff for
BO11044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 100..3486 | 17..3405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:19 Download gff for
BO11044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 404384..404473 | 17..106 | 100 | -> | Plus |
| 2L | 404536..406035 | 107..1606 | 99 | -> | Plus |
| 2L | 406095..407891 | 1607..3405 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:36 Download gff for
BO11044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 404384..404473 | 17..106 | 100 | -> | Plus |
| arm_2L | 404536..406035 | 107..1606 | 99 | -> | Plus |
| arm_2L | 406095..407891 | 1607..3405 | 99 | | Plus |
BO11044.pep Sequence
Translation from 16 to 3421
> BO11044.pep
MLEEMQQMKTIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVG
LDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPT
DSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQA
TPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDR
GQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCL
ILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCK
SFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMI
QKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCL
QKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQN
SGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPV
HTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYL
GEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFK
KNGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMY
PDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLN
WPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYD
MEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHMPELIKHLD
TDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSF
DLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGL
IPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAI
DYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDK
WQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLF
HNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVS
MIEIPFSFKYLVTELSSVNINARFKLNEIASFLDH
BO11044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-PA | 1129 | CG4033-PA | 1..1129 | 1..1129 | 5989 | 100 | Plus |
| RpIII128-PA | 1137 | CG8344-PA | 51..1128 | 39..1120 | 967 | 26.7 | Plus |
| RpII140-PB | 1176 | CG3180-PB | 45..1172 | 40..1123 | 907 | 27.3 | Plus |
| RpII140-PA | 1176 | CG3180-PA | 45..1172 | 40..1123 | 907 | 27.3 | Plus |
