Clone Sequence Records
BO11047.3prime Sequence
946 bp (827 high quality bases) assembled on 2006-04-19
> BO11047.3prime
ATGGTCTAGAAAGCTTGCCGAGTTGACAGGATTAACCTGGGCCAGCGGGG
ATGGTCCTCCAACGGCGCCACCACCACGAATGGCGATTGCACCTTGGCCG
GACCGGATCGGCTTTGCGATCTGTGCCTGTGGGCCACGTCTGCCCAGATG
CTTCTGTCGCACCGCCTCCTTGATGCGGTCCACCTCGTATTGGTAGCGCT
TGCGATCCCGCATTGCGCCCTCCTTCGCCTCCTTGAGCGCTGTCTCCAGA
GCTTTCACCCGCTCCATGGTACAGCGTAGACGCTTCTCCAGCTTGGGCAG
CTCGCACCGCAGATCGGCGTTGTCCCGCACCAATTGCTTGTGCACCTTGG
TCAGCTGGTCGAGGTTGTTCTCCAAGAAGGAAATCTTCTGTTTCTGCGCG
AGTGATCCACCGTCCTCCTCGCTCTCCTCGTTTACGACATTCTTTCGGAT
TCGTTGCTGTAGATCCTGAACGAAAAGTTTTCGAAGGTTGTGTAGCGTCT
GCAACTCCTTGGCCACCGTGTCCTCCAGGCCCTTGAGGTCTTTGCGCGCT
TGCTCCCGACGCTCGTTGGTGAGGATGATGTTCTGAAGCTCGCTGGACTT
CTCGGCATCCTCCTGGCGAACCTTCTCGTAGTCGGCCGTCATCTGTTGGT
GCGCCAAGAGCAGCTTCTGATGGACATCCTTCATCTCGTCCATTTCGTGC
TGCTTGGCGGCAATCTCGTCCCGGAGCTCGGACACCTGCCGGGTGTGGGC
TTCGCGTAGCTCGTCCATCTGAGAATCGAACATGGAGCGCAGCTCCTCAG
CCCGCTGTTTCTCCTCGGCGTTAACGGCGGAAACGTGCTCGGCGGCCTTG
AGCTTGGCGCACTCCTCGCGCAGCGAATCGATTTGCTCCTCGAGCGTACG
CTTTCTTGTTTCTGCCTCCCGCATCGACTCCTGCAACGACTTCATG
BO11047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7765-PA | 2928 | Khc-RA | 2041..2925 | 903..19 | 4200 | 98.9 | Minus |
CG7765-PA | 2928 | Khc-RA | 1998..2033 | 946..911 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Khc-RA | 3718 | CG7765-RA | 2484..3411 | 946..19 | 4445 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16267776..16268265 | 457..946 | 2255 | 97.3 | Plus |
2R | 25286936 | 2R | 16267267..16267708 | 19..460 | 2180 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:47:00 has no hits.
BO11047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:44 Download gff for
BO11047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-PA | 1998..2928 | 18..946 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:41 Download gff for
BO11047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7765-PA | 1998..2928 | 18..946 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:04:38 Download gff for
BO11047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 2484..3411 | 19..946 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:47 Download gff for
BO11047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 2484..3411 | 19..946 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:47 Download gff for
BO11047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16267267..16267704 | 19..456 | 99 | <- | Plus |
2R | 16267776..16268265 | 457..946 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:04:38 Download gff for
BO11047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12154772..12155209 | 19..456 | 99 | <- | Plus |
arm_2R | 12155281..12155770 | 457..946 | 97 | | Plus |
BO11047.5prime Sequence
962 bp (839 high quality bases) assembled on 2006-04-19
> BO11047.5prime
GAAGTTATCAGTCGACATGTCCGCGGAACGAGAGATTCCCGCCGAGGACA
GCATCAAAGTGGTCTGCCGATTCCGACCGCTGAACGACAGCGAAGAGAAG
GCCGGCTCCAAGTTCGTGGTCAAGTTCCCCAACAATGTGGAGGAGAACTG
CATATCCATAGCGGGCAAGGTGTATTTGTTCGACAAGGTCTTCAAACCGA
ATGCATCCCAGGAGAAGGTCTACAATGAGGCGGCCAAGTCCATTGTTACG
GATGTCCTGGCCGGGTACAATGGAACGATATTCGCATATGGTCAGACGTC
CTCCGGAAAAACGCATACGATGGAGGGCGTGATCGGGGACTCCGTAAAAC
AGGGTATCATACCACGTATCGTCAACGACATTTTCAATCACATCTACGCG
ATGGAGGTGAACCTGGAGTTTCACATCAAGGTCTCCTACTACGAGATCTA
CATGGACAAGATTCGAGATCTGTTGGACGTCTCCAAGGTGAACTTAAGCG
TGCACGAGGACAAGAACCGGGTGCCGTACGTCAAGGGCGCTACGGAACGG
TTCGTCTCGTCGCCGGAGGATGTTTTCGAGGTGATCGAGGAGGGCAAATC
CAATCGTCACATCGCTGTGACAAACATGAACGAGCATTCTTCGCGATCCC
ACTCAGTATTCCTTATCAATGTGAAGCAGGAGAACCTGGAGAACCAGAAG
AAACTATCCGGCAAACTCTACCTGGTGGATTTGGCCGGTTCCGAGAAGGT
TTCCAAGACTGGAGCGGAGGGAACCGTTCTTGATGAAGCCAAGAACATCA
ACAAGTCGCTGTCGGCCTTGGGGCACGTATTTCTGCCCTGGCGGACGGAA
ACAAAACGCACATCCCCTACCGTGATTCCNAGCTAACGCGCATCCTGCAG
GAGTCGCTGGGAGGCAACGCACGCACAACCATCGTCATCTGCTGCTCTCC
AGCCAGTTTCAA
BO11047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7765-PA | 2928 | Khc-RA | 1..806 | 17..822 | 4030 | 100 | Plus |
CG7765-PA | 2928 | Khc-RA | 814..947 | 829..962 | 576 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Khc-RA | 3718 | CG7765-RA | 487..1433 | 17..962 | 4624 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16269794..16270254 | 623..163 | 2305 | 100 | Minus |
2R | 25286936 | 2R | 16269316..16269655 | 962..624 | 1564 | 97.9 | Minus |
2R | 25286936 | 2R | 16271338..16271485 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:48:58 has no hits.
BO11047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:45 Download gff for
BO11047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-PA | 1..945 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:42 Download gff for
BO11047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7765-PA | 1..945 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:18 Download gff for
BO11047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 483..1431 | 10..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:31 Download gff for
BO11047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 483..1431 | 10..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:31 Download gff for
BO11047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16269318..16269655 | 624..960 | 97 | <- | Minus |
2R | 16269794..16270253 | 164..623 | 100 | <- | Minus |
2R | 16271339..16271489 | 10..163 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:18 Download gff for
BO11047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12156823..12157160 | 624..960 | 97 | <- | Minus |
arm_2R | 12157299..12157758 | 164..623 | 100 | <- | Minus |
arm_2R | 12158844..12158994 | 10..163 | 98 | | Minus |
BO11047.complete Sequence
2959 bp (2959 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631972
> BO11047.complete
GAAGTTATCAGTCGACATGTCCGCGGAACGAGAGATTCCCGCCGAGGACA
GCATCAAAGTGGTCTGCCGATTCCGACCGCTGAACGACAGCGAAGAGAAG
GCCGGCTCCAAGTTCGTGGTCAAGTTCCCCAACAATGTGGAGGAGAACTG
CATATCCATAGCGGGCAAGGTGTATTTGTTCGACAAGGTCTTCAAACCGA
ATGCATCCCAGGAGAAGGTCTACAATGAGGCGGCCAAGTCCATTGTTACG
GATGTCCTGGCCGGGTACAATGGAACGATATTCGCATATGGTCAGACGTC
CTCCGGAAAAACGCATACGATGGAGGGCGTGATCGGGGACTCCGTAAAAC
AGGGTATCATACCACGTATCGTCAACGACATTTTCAATCACATCTACGCG
ATGGAGGTGAACCTGGAGTTTCACATCAAGGTCTCCTACTACGAGATCTA
CATGGACAAGATTCGAGATCTGTTGGACGTCTCCAAGGTGAACTTAAGCG
TGCACGAGGACAAGAACCGGGTGCCGTACGTCAAGGGCGCTACGGAACGG
TTCGTCTCGTCGCCGGAGGATGTTTTCGAGGTGATCGAGGAGGGCAAATC
CAATCGTCACATCGCTGTGACAAACATGAACGAGCATTCTTCGCGATCCC
ACTCAGTATTCCTTATCAATGTGAAGCAGGAGAACCTGGAGAACCAGAAG
AAACTATCCGGCAAACTCTACCTGGTGGATTTGGCCGGTTCCGAGAAGGT
TTCCAAGACTGGAGCGGAGGGAACCGTTCTTGATGAAGCCAAGAACATCA
ACAAGTCGCTGTCGGCCTTGGGCAACGTAATTTCTGCCCTGGCGGACGGA
AACAAAACGCACATCCCCTACCGTGATTCCAAGCTAACGCGCATCCTGCA
GGAGTCGCTGGGAGGCAACGCACGCACAACCATCGTCATCTGCTGCTCTC
CAGCCAGTTTCAACGAATCTGAAACGAAGTCAACGCTGGACTTCGGTCGT
AGAGCCAAGACAGTGAAGAACGTGGTCTGCGTTAACGAGGAGCTTACTGC
CGAGGAATGGAAGCGACGCTATGAAAAGGAGAAGGAAAAGAACGCCCGAC
TAAAGGGTAAGGTGGAGAAGCTGGAGATCGAGCTTGCGCGCTGGAGAGCG
GGTGAAACCGTTAAGGCGGAGGAGCAAATCAACATGGAGGATCTCATGGA
GGCAAGCACGCCCAACCTGGAAGTGGAGGCAGCACAGACGGCGGCGGCCG
AGGCCGCTTTGGCCGCCCAGCGAACGGCTCTCGCCAACATGTCCGCATCG
GTTGCCGTGAACGAGCAGGCCAGGCTGGCTACAGAGTGCGAGCGTCTCTA
CCAGCAGCTGGACGACAAGGATGAGGAGATCAATCAGCAGAGCCAGTACG
CCGAGCAGCTCAAGGAGCAGGTGATGGAGCAGGAGGAACTCATCGCTAAC
GCTCGGCGTGAGTATGAGACTTTGCAGTCGGAGATGGCGCGAATCCAACA
GGAGAACGAGTCCGCCAAGGAAGAGGTTAAAGAGGTGCTCCAAGCTCTCG
AAGAGCTGGCTGTAAACTACGACCAGAAATCCCAGGAGATCGATAACAAG
AACAAGGATATCGATGCCCTCAACGAGGAGCTGCAGCAGAAGCAGTCTGT
GTTCAACGCCGCCTCCACAGAGCTACAGCAGCTCAAGGACATGTCCTCAC
ACCAGAAGAAGCGCATCACGGAAATGCTAACCAACCTACTGCGCGACCTC
GGCGAAGTGGGCCAGGCCATTGCCCCCGGCGAGTCCAGCATCGACCTTAA
GATGAGTGCTCTGGCTGGCACGGATGCCAGCAAGGTGGAGGAAGATTTCA
CCATGGCGCGTTTGTTTATCAGCAAGATGAAGACGGAGGCCAAGAACATT
GCCCAGCGATGCTCTAACATGGAAACACAGCAGGCTGACTCCAACAAGAA
GATCTCCGAATATGAGAAAGATCTGGGCGAGTACCGGCTTCTCATTTCGC
AGCACGAGGCACGCATGAAGTCGCTGCAGGAGTCGATGCGGGAGGCAGAA
AACAAGAAGCGTACGCTCGAGGAGCAAATCGATTCGCTGCGCGAGGAGTG
CGCCAAGCTCAAGGCCGCCGAGCACGTTTCCGCCGTTAACGCCGAGGAGA
AACAGCGGGCTGAGGAGCTGCGCTCCATGTTCGATTCTCAGATGGACGAG
CTACGCGAAGCCCACACCCGGCAGGTGTCCGAGCTCCGGGACGAGATTGC
CGCCAAGCAGCACGAAATGGACGAGATGAAGGATGTCCATCAGAAGCTGC
TCTTGGCGCACCAACAGATGACGGCCGACTACGAGAAGGTTCGCCAGGAG
GATGCCGAGAAGTCCAGCGAGCTTCAGAACATCATCCTCACCAACGAGCG
TCGGGAGCAAGCGCGCAAAGACCTCAAGGGCCTGGAGGACACGGTGGCCA
AGGAGTTGCAGACGCTACACAACCTTCGAAAACTTTTCGTTCAGGATCTA
CAGCAACGAATCCGAAAGAATGTCGTAAACGAGGAGAGCGAGGAGGACGG
TGGATCACTCGCGCAGAAACAGAAGATTTCCTTCTTGGAGAACAACCTCG
ACCAGCTGACCAAGGTGCACAAGCAATTGGTGCGGGACAACGCCGATCTG
CGGTGCGAGCTGCCCAAGCTGGAGAAGCGTCTACGCTGTACCATGGAGCG
GGTGAAAGCTCTGGAGACAGCGCTCAAGGAGGCGAAGGAGGGCGCAATGC
GGGATCGCAAGCGCTACCAATACGAGGTGGACCGCATCAAGGAGGCGGTG
CGACAGAAGCATCTGGGCAGACGTGGCCCACAGGCACAGATCGCAAAGCC
GATCCGGTCCGGCCAAGGTGCAATCGCCATTCGTGGTGGTGGCGCCGTTG
GAGGACCATCCCCGCTGGCCCAGGTTAATCCTGTCAACTCGGCAAGCTTT
CTAGACCAT
BO11047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Khc-RA | 2928 | CG7765-PA | 1..2925 | 17..2941 | 14310 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Khc-RA | 3718 | CG7765-RA | 487..3411 | 17..2941 | 14310 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16267776..16269655 | 2503..624 | 9115 | 99 | Minus |
2R | 25286936 | 2R | 16269794..16270254 | 623..163 | 2305 | 100 | Minus |
2R | 25286936 | 2R | 16267267..16267708 | 2941..2500 | 2180 | 99.5 | Minus |
2R | 25286936 | 2R | 16271338..16271485 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:40:07 has no hits.
BO11047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:37 Download gff for
BO11047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 1..2928 | 17..2942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:27 Download gff for
BO11047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 490..3418 | 10..2941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:44 Download gff for
BO11047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 487..3411 | 17..2943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:37 Download gff for
BO11047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 490..3418 | 10..2941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:36 Download gff for
BO11047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Khc-RA | 487..3411 | 17..2943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:36 Download gff for
BO11047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16267265..16267704 | 2504..2943 | 99 | <- | Minus |
2R | 16267776..16269655 | 624..2503 | 98 | <- | Minus |
2R | 16269794..16270253 | 164..623 | 100 | <- | Minus |
2R | 16271339..16271485 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:44 Download gff for
BO11047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12154770..12155209 | 2504..2943 | 99 | <- | Minus |
arm_2R | 12155281..12157160 | 624..2503 | 98 | <- | Minus |
arm_2R | 12157299..12157758 | 164..623 | 100 | <- | Minus |
arm_2R | 12158844..12158990 | 17..163 | 100 | | Minus |
BO11047.pep Sequence
Translation from 16 to 2959
> BO11047.pep
MSAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG
KVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTH
TMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIR
DLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIA
VTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGA
EGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGG
NARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKR
RYEKEKEKNARLKGKVEKLEIELARWRAGETVKAEEQINMEDLMEASTPN
LEVEAAQTAAAEAALAAQRTALANMSASVAVNEQARLATECERLYQQLDD
KDEEINQQSQYAEQLKEQVMEQEELIANARREYETLQSEMARIQQENESA
KEEVKEVLQALEELAVNYDQKSQEIDNKNKDIDALNEELQQKQSVFNAAS
TELQQLKDMSSHQKKRITEMLTNLLRDLGEVGQAIAPGESSIDLKMSALA
GTDASKVEEDFTMARLFISKMKTEAKNIAQRCSNMETQQADSNKKISEYE
KDLGEYRLLISQHEARMKSLQESMREAENKKRTLEEQIDSLREECAKLKA
AEHVSAVNAEEKQRAEELRSMFDSQMDELREAHTRQVSELRDEIAAKQHE
MDEMKDVHQKLLLAHQQMTADYEKVRQEDAEKSSELQNIILTNERREQAR
KDLKGLEDTVAKELQTLHNLRKLFVQDLQQRIRKNVVNEESEEDGGSLAQ
KQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRCTMERVKALE
TALKEAKEGAMRDRKRYQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRSGQ
GAIAIRGGGAVGGPSPLAQVNPVNSASFLDH
BO11047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Khc-PA | 975 | CG7765-PA | 1..975 | 1..975 | 4865 | 100 | Plus |
Klp68D-PB | 784 | CG7293-PB | 18..574 | 11..555 | 733 | 34.2 | Plus |
Klp68D-PA | 784 | CG7293-PA | 18..574 | 11..555 | 733 | 34.2 | Plus |
Klp64D-PA | 677 | CG10642-PA | 19..546 | 11..575 | 718 | 34.9 | Plus |
Klp61F-PA | 1066 | CG9191-PA | 9..876 | 2..875 | 702 | 28 | Plus |