Clone BO11047 Report

Search the DGRC for BO11047

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptKhc-RA
Protein status:BO11047.pep: validated full length
Sequenced Size:2959

Clone Sequence Records

BO11047.3prime Sequence

946 bp (827 high quality bases) assembled on 2006-04-19

> BO11047.3prime
ATGGTCTAGAAAGCTTGCCGAGTTGACAGGATTAACCTGGGCCAGCGGGG
ATGGTCCTCCAACGGCGCCACCACCACGAATGGCGATTGCACCTTGGCCG
GACCGGATCGGCTTTGCGATCTGTGCCTGTGGGCCACGTCTGCCCAGATG
CTTCTGTCGCACCGCCTCCTTGATGCGGTCCACCTCGTATTGGTAGCGCT
TGCGATCCCGCATTGCGCCCTCCTTCGCCTCCTTGAGCGCTGTCTCCAGA
GCTTTCACCCGCTCCATGGTACAGCGTAGACGCTTCTCCAGCTTGGGCAG
CTCGCACCGCAGATCGGCGTTGTCCCGCACCAATTGCTTGTGCACCTTGG
TCAGCTGGTCGAGGTTGTTCTCCAAGAAGGAAATCTTCTGTTTCTGCGCG
AGTGATCCACCGTCCTCCTCGCTCTCCTCGTTTACGACATTCTTTCGGAT
TCGTTGCTGTAGATCCTGAACGAAAAGTTTTCGAAGGTTGTGTAGCGTCT
GCAACTCCTTGGCCACCGTGTCCTCCAGGCCCTTGAGGTCTTTGCGCGCT
TGCTCCCGACGCTCGTTGGTGAGGATGATGTTCTGAAGCTCGCTGGACTT
CTCGGCATCCTCCTGGCGAACCTTCTCGTAGTCGGCCGTCATCTGTTGGT
GCGCCAAGAGCAGCTTCTGATGGACATCCTTCATCTCGTCCATTTCGTGC
TGCTTGGCGGCAATCTCGTCCCGGAGCTCGGACACCTGCCGGGTGTGGGC
TTCGCGTAGCTCGTCCATCTGAGAATCGAACATGGAGCGCAGCTCCTCAG
CCCGCTGTTTCTCCTCGGCGTTAACGGCGGAAACGTGCTCGGCGGCCTTG
AGCTTGGCGCACTCCTCGCGCAGCGAATCGATTTGCTCCTCGAGCGTACG
CTTTCTTGTTTCTGCCTCCCGCATCGACTCCTGCAACGACTTCATG

BO11047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7765-PA 2928 Khc-RA 2041..2925 903..19 4200 98.9 Minus
CG7765-PA 2928 Khc-RA 1998..2033 946..911 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Khc-RA 3718 CG7765-RA 2484..3411 946..19 4445 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16267776..16268265 457..946 2255 97.3 Plus
2R 25286936 2R 16267267..16267708 19..460 2180 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 10:47:00 has no hits.

BO11047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:44 Download gff for BO11047.3prime
Subject Subject Range Query Range Percent Splice Strand
Khc-PA 1998..2928 18..946 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:41 Download gff for BO11047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7765-PA 1998..2928 18..946 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:04:38 Download gff for BO11047.3prime
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 2484..3411 19..946 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:47 Download gff for BO11047.3prime
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 2484..3411 19..946 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:47 Download gff for BO11047.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16267267..16267704 19..456 99 <- Plus
2R 16267776..16268265 457..946 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:04:38 Download gff for BO11047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12154772..12155209 19..456 99 <- Plus
arm_2R 12155281..12155770 457..946 97   Plus

BO11047.5prime Sequence

962 bp (839 high quality bases) assembled on 2006-04-19

> BO11047.5prime
GAAGTTATCAGTCGACATGTCCGCGGAACGAGAGATTCCCGCCGAGGACA
GCATCAAAGTGGTCTGCCGATTCCGACCGCTGAACGACAGCGAAGAGAAG
GCCGGCTCCAAGTTCGTGGTCAAGTTCCCCAACAATGTGGAGGAGAACTG
CATATCCATAGCGGGCAAGGTGTATTTGTTCGACAAGGTCTTCAAACCGA
ATGCATCCCAGGAGAAGGTCTACAATGAGGCGGCCAAGTCCATTGTTACG
GATGTCCTGGCCGGGTACAATGGAACGATATTCGCATATGGTCAGACGTC
CTCCGGAAAAACGCATACGATGGAGGGCGTGATCGGGGACTCCGTAAAAC
AGGGTATCATACCACGTATCGTCAACGACATTTTCAATCACATCTACGCG
ATGGAGGTGAACCTGGAGTTTCACATCAAGGTCTCCTACTACGAGATCTA
CATGGACAAGATTCGAGATCTGTTGGACGTCTCCAAGGTGAACTTAAGCG
TGCACGAGGACAAGAACCGGGTGCCGTACGTCAAGGGCGCTACGGAACGG
TTCGTCTCGTCGCCGGAGGATGTTTTCGAGGTGATCGAGGAGGGCAAATC
CAATCGTCACATCGCTGTGACAAACATGAACGAGCATTCTTCGCGATCCC
ACTCAGTATTCCTTATCAATGTGAAGCAGGAGAACCTGGAGAACCAGAAG
AAACTATCCGGCAAACTCTACCTGGTGGATTTGGCCGGTTCCGAGAAGGT
TTCCAAGACTGGAGCGGAGGGAACCGTTCTTGATGAAGCCAAGAACATCA
ACAAGTCGCTGTCGGCCTTGGGGCACGTATTTCTGCCCTGGCGGACGGAA
ACAAAACGCACATCCCCTACCGTGATTCCNAGCTAACGCGCATCCTGCAG
GAGTCGCTGGGAGGCAACGCACGCACAACCATCGTCATCTGCTGCTCTCC
AGCCAGTTTCAA

BO11047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7765-PA 2928 Khc-RA 1..806 17..822 4030 100 Plus
CG7765-PA 2928 Khc-RA 814..947 829..962 576 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Khc-RA 3718 CG7765-RA 487..1433 17..962 4624 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16269794..16270254 623..163 2305 100 Minus
2R 25286936 2R 16269316..16269655 962..624 1564 97.9 Minus
2R 25286936 2R 16271338..16271485 164..17 740 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:48:58 has no hits.

BO11047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:45 Download gff for BO11047.5prime
Subject Subject Range Query Range Percent Splice Strand
Khc-PA 1..945 17..960 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:42 Download gff for BO11047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7765-PA 1..945 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:18 Download gff for BO11047.5prime
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 483..1431 10..960 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:31 Download gff for BO11047.5prime
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 483..1431 10..960 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:31 Download gff for BO11047.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16269318..16269655 624..960 97 <- Minus
2R 16269794..16270253 164..623 100 <- Minus
2R 16271339..16271489 10..163 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:18 Download gff for BO11047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12156823..12157160 624..960 97 <- Minus
arm_2R 12157299..12157758 164..623 100 <- Minus
arm_2R 12158844..12158994 10..163 98   Minus

BO11047.complete Sequence

2959 bp (2959 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631972

> BO11047.complete
GAAGTTATCAGTCGACATGTCCGCGGAACGAGAGATTCCCGCCGAGGACA
GCATCAAAGTGGTCTGCCGATTCCGACCGCTGAACGACAGCGAAGAGAAG
GCCGGCTCCAAGTTCGTGGTCAAGTTCCCCAACAATGTGGAGGAGAACTG
CATATCCATAGCGGGCAAGGTGTATTTGTTCGACAAGGTCTTCAAACCGA
ATGCATCCCAGGAGAAGGTCTACAATGAGGCGGCCAAGTCCATTGTTACG
GATGTCCTGGCCGGGTACAATGGAACGATATTCGCATATGGTCAGACGTC
CTCCGGAAAAACGCATACGATGGAGGGCGTGATCGGGGACTCCGTAAAAC
AGGGTATCATACCACGTATCGTCAACGACATTTTCAATCACATCTACGCG
ATGGAGGTGAACCTGGAGTTTCACATCAAGGTCTCCTACTACGAGATCTA
CATGGACAAGATTCGAGATCTGTTGGACGTCTCCAAGGTGAACTTAAGCG
TGCACGAGGACAAGAACCGGGTGCCGTACGTCAAGGGCGCTACGGAACGG
TTCGTCTCGTCGCCGGAGGATGTTTTCGAGGTGATCGAGGAGGGCAAATC
CAATCGTCACATCGCTGTGACAAACATGAACGAGCATTCTTCGCGATCCC
ACTCAGTATTCCTTATCAATGTGAAGCAGGAGAACCTGGAGAACCAGAAG
AAACTATCCGGCAAACTCTACCTGGTGGATTTGGCCGGTTCCGAGAAGGT
TTCCAAGACTGGAGCGGAGGGAACCGTTCTTGATGAAGCCAAGAACATCA
ACAAGTCGCTGTCGGCCTTGGGCAACGTAATTTCTGCCCTGGCGGACGGA
AACAAAACGCACATCCCCTACCGTGATTCCAAGCTAACGCGCATCCTGCA
GGAGTCGCTGGGAGGCAACGCACGCACAACCATCGTCATCTGCTGCTCTC
CAGCCAGTTTCAACGAATCTGAAACGAAGTCAACGCTGGACTTCGGTCGT
AGAGCCAAGACAGTGAAGAACGTGGTCTGCGTTAACGAGGAGCTTACTGC
CGAGGAATGGAAGCGACGCTATGAAAAGGAGAAGGAAAAGAACGCCCGAC
TAAAGGGTAAGGTGGAGAAGCTGGAGATCGAGCTTGCGCGCTGGAGAGCG
GGTGAAACCGTTAAGGCGGAGGAGCAAATCAACATGGAGGATCTCATGGA
GGCAAGCACGCCCAACCTGGAAGTGGAGGCAGCACAGACGGCGGCGGCCG
AGGCCGCTTTGGCCGCCCAGCGAACGGCTCTCGCCAACATGTCCGCATCG
GTTGCCGTGAACGAGCAGGCCAGGCTGGCTACAGAGTGCGAGCGTCTCTA
CCAGCAGCTGGACGACAAGGATGAGGAGATCAATCAGCAGAGCCAGTACG
CCGAGCAGCTCAAGGAGCAGGTGATGGAGCAGGAGGAACTCATCGCTAAC
GCTCGGCGTGAGTATGAGACTTTGCAGTCGGAGATGGCGCGAATCCAACA
GGAGAACGAGTCCGCCAAGGAAGAGGTTAAAGAGGTGCTCCAAGCTCTCG
AAGAGCTGGCTGTAAACTACGACCAGAAATCCCAGGAGATCGATAACAAG
AACAAGGATATCGATGCCCTCAACGAGGAGCTGCAGCAGAAGCAGTCTGT
GTTCAACGCCGCCTCCACAGAGCTACAGCAGCTCAAGGACATGTCCTCAC
ACCAGAAGAAGCGCATCACGGAAATGCTAACCAACCTACTGCGCGACCTC
GGCGAAGTGGGCCAGGCCATTGCCCCCGGCGAGTCCAGCATCGACCTTAA
GATGAGTGCTCTGGCTGGCACGGATGCCAGCAAGGTGGAGGAAGATTTCA
CCATGGCGCGTTTGTTTATCAGCAAGATGAAGACGGAGGCCAAGAACATT
GCCCAGCGATGCTCTAACATGGAAACACAGCAGGCTGACTCCAACAAGAA
GATCTCCGAATATGAGAAAGATCTGGGCGAGTACCGGCTTCTCATTTCGC
AGCACGAGGCACGCATGAAGTCGCTGCAGGAGTCGATGCGGGAGGCAGAA
AACAAGAAGCGTACGCTCGAGGAGCAAATCGATTCGCTGCGCGAGGAGTG
CGCCAAGCTCAAGGCCGCCGAGCACGTTTCCGCCGTTAACGCCGAGGAGA
AACAGCGGGCTGAGGAGCTGCGCTCCATGTTCGATTCTCAGATGGACGAG
CTACGCGAAGCCCACACCCGGCAGGTGTCCGAGCTCCGGGACGAGATTGC
CGCCAAGCAGCACGAAATGGACGAGATGAAGGATGTCCATCAGAAGCTGC
TCTTGGCGCACCAACAGATGACGGCCGACTACGAGAAGGTTCGCCAGGAG
GATGCCGAGAAGTCCAGCGAGCTTCAGAACATCATCCTCACCAACGAGCG
TCGGGAGCAAGCGCGCAAAGACCTCAAGGGCCTGGAGGACACGGTGGCCA
AGGAGTTGCAGACGCTACACAACCTTCGAAAACTTTTCGTTCAGGATCTA
CAGCAACGAATCCGAAAGAATGTCGTAAACGAGGAGAGCGAGGAGGACGG
TGGATCACTCGCGCAGAAACAGAAGATTTCCTTCTTGGAGAACAACCTCG
ACCAGCTGACCAAGGTGCACAAGCAATTGGTGCGGGACAACGCCGATCTG
CGGTGCGAGCTGCCCAAGCTGGAGAAGCGTCTACGCTGTACCATGGAGCG
GGTGAAAGCTCTGGAGACAGCGCTCAAGGAGGCGAAGGAGGGCGCAATGC
GGGATCGCAAGCGCTACCAATACGAGGTGGACCGCATCAAGGAGGCGGTG
CGACAGAAGCATCTGGGCAGACGTGGCCCACAGGCACAGATCGCAAAGCC
GATCCGGTCCGGCCAAGGTGCAATCGCCATTCGTGGTGGTGGCGCCGTTG
GAGGACCATCCCCGCTGGCCCAGGTTAATCCTGTCAACTCGGCAAGCTTT
CTAGACCAT

BO11047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Khc-RA 2928 CG7765-PA 1..2925 17..2941 14310 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Khc-RA 3718 CG7765-RA 487..3411 17..2941 14310 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16267776..16269655 2503..624 9115 99 Minus
2R 25286936 2R 16269794..16270254 623..163 2305 100 Minus
2R 25286936 2R 16267267..16267708 2941..2500 2180 99.5 Minus
2R 25286936 2R 16271338..16271485 164..17 740 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:40:07 has no hits.

BO11047.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:37 Download gff for BO11047.complete
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 1..2928 17..2942 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:27 Download gff for BO11047.complete
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 490..3418 10..2941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:44 Download gff for BO11047.complete
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 487..3411 17..2943 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:37 Download gff for BO11047.complete
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 490..3418 10..2941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:36 Download gff for BO11047.complete
Subject Subject Range Query Range Percent Splice Strand
Khc-RA 487..3411 17..2943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:36 Download gff for BO11047.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16267265..16267704 2504..2943 99 <- Minus
2R 16267776..16269655 624..2503 98 <- Minus
2R 16269794..16270253 164..623 100 <- Minus
2R 16271339..16271485 17..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:44 Download gff for BO11047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12154770..12155209 2504..2943 99 <- Minus
arm_2R 12155281..12157160 624..2503 98 <- Minus
arm_2R 12157299..12157758 164..623 100 <- Minus
arm_2R 12158844..12158990 17..163 100   Minus

BO11047.pep Sequence

Translation from 16 to 2959

> BO11047.pep
MSAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG
KVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTH
TMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIR
DLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIA
VTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGA
EGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGG
NARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKR
RYEKEKEKNARLKGKVEKLEIELARWRAGETVKAEEQINMEDLMEASTPN
LEVEAAQTAAAEAALAAQRTALANMSASVAVNEQARLATECERLYQQLDD
KDEEINQQSQYAEQLKEQVMEQEELIANARREYETLQSEMARIQQENESA
KEEVKEVLQALEELAVNYDQKSQEIDNKNKDIDALNEELQQKQSVFNAAS
TELQQLKDMSSHQKKRITEMLTNLLRDLGEVGQAIAPGESSIDLKMSALA
GTDASKVEEDFTMARLFISKMKTEAKNIAQRCSNMETQQADSNKKISEYE
KDLGEYRLLISQHEARMKSLQESMREAENKKRTLEEQIDSLREECAKLKA
AEHVSAVNAEEKQRAEELRSMFDSQMDELREAHTRQVSELRDEIAAKQHE
MDEMKDVHQKLLLAHQQMTADYEKVRQEDAEKSSELQNIILTNERREQAR
KDLKGLEDTVAKELQTLHNLRKLFVQDLQQRIRKNVVNEESEEDGGSLAQ
KQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRCTMERVKALE
TALKEAKEGAMRDRKRYQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRSGQ
GAIAIRGGGAVGGPSPLAQVNPVNSASFLDH

BO11047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Khc-PA 975 CG7765-PA 1..975 1..975 4865 100 Plus
Klp68D-PB 784 CG7293-PB 18..574 11..555 733 34.2 Plus
Klp68D-PA 784 CG7293-PA 18..574 11..555 733 34.2 Plus
Klp64D-PA 677 CG10642-PA 19..546 11..575 718 34.9 Plus
Klp61F-PA 1066 CG9191-PA 9..876 2..875 702 28 Plus