Clone Sequence Records
BO11048.3prime Sequence
918 bp (835 high quality bases) assembled on 2006-04-19
> BO11048.3prime
ATGGTCTAGAAAGCTTGCCTTGTTGCCGCTGCTCTCGCGCTCCTCTCGAA
TCCTCTTAAATGCCTCCGTCTTGACAAAGTCCACGGATCTATAGACCACG
CTGCTAGGCACTGGCGCTCGAGCTCCGCCAGCTTCGACGCCTGCGAATCG
CATTCCACTAGCTCCATTTCCGCCTTGTGAGTACAGATTCCCCACACTCA
TGCTGGATCGATTTAGCAATGGCGGTTTGTTGGTCACATCCAGATCAAAG
TACTGCAGCTTGTGCTCAGTCTGCGCCGCCGCTTGCTGCTTGGGAGCAGC
TGCTGCCGTCAAGCTCATCATGGCAGCCGCTGCGGAGGCGGTGCGCTGAT
GTTGTACCGACATGCTGCCGGGACTGTTCGGATGATGCCGATGCTGTTGG
CGAGGCAGGGTGCGGGTCTCGTGAAAGAAGGCGTTGGCTGCCGCCGGGGA
GTGTACATCCGTTTCATGCGGCAGCACCATTGAGAGAGGGGCACCGGAGG
AACGTCGCGTTGCCGGCGACATGGTAGCCGAATTGCCCAACTTATAGGCA
TTCGGTTTGCACTTCCTGTCCACACTGGGCGGTCCAATGGGCTGCTGCAG
TTGGGCTGCACCCAGTTTATTGGTTAACTGATCTACGCCCACCGGGGGCT
TTGCAGGAAACTCCTCCGGCGGTTTGTCCTCTACAACTGGCAATCCACCC
GCCACCTTTGGCTTAAGTTTCCGGTTAACCGGCGGGCAGTCCGCCTGCTC
CATGAAGTCGTATCGAANAACATTGCCCTCCATCTTTGTGGGAGCTGCAT
TGGTGTAGCAGTGTCGAGGCAATGTGCGCGCACTGGTGGGCGATGATGCG
ACTGCCTGTGCCTCACCCATCAGGCCGGGATTCGCTGCCGCTGAAATTGC
GGCCACTGCACCCAGATC
BO11048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1044-PB | 2397 | dos-RB | 1495..2394 | 918..19 | 4481 | 99.8 | Minus |
| CG1044-PA | 2637 | dos-RA | 1735..2634 | 918..19 | 4481 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dos-RA | 3254 | CG1044-RA | 1808..2707 | 918..19 | 4489 | 99.9 | Minus |
| dos-RB | 4666 | CG1044-RB | 3220..4119 | 918..19 | 4489 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2594520..2595043 | 542..19 | 2620 | 100 | Minus |
| 3L | 28110227 | 3L | 2594088..2594465 | 918..541 | 1879 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:47:12 has no hits.
BO11048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:56:46 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:44 Download gff for
BO11048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1044-PA | 1735..2637 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:04:41 Download gff for
BO11048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RB | 3220..4129 | 8..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:21 Download gff for
BO11048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RB | 3220..4129 | 8..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:21 Download gff for
BO11048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2594088..2594465 | 541..918 | 99 | -> | Minus |
| 3L | 2594522..2595053 | 8..540 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:04:41 Download gff for
BO11048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2594088..2594465 | 541..918 | 99 | -> | Minus |
| arm_3L | 2594522..2595053 | 8..540 | 99 | | Minus |
BO11048.5prime Sequence
908 bp (794 high quality bases) assembled on 2006-04-19
> BO11048.5prime
GAAGTTATCAGTCGACATGTTCGATATCAAGACGCCCAAGCGCACCTACT
ACCTGGCTGCTGAGACGGAGGCGGATATGCGCGACTGGGTGAACTGCATC
TGCCAGGTGTGTCACCTACACGACACAAAGCAATCGAATGAGTTGCCATT
AGGAGCTGTGGGTGCAGACGAAAACCGCACCCAACACACGAGCTCCAGTG
GCGGTCTAAGCAACTCCACTCAAAATACGACCACCACATCGTTGCACTCG
TCGGCCGGAACCACAGCGCCTCAGGCTTCGGTCCCAAATGCTGGAGGATC
TGCCCAGCTGCGACGACCGGCGGTCATTGAAGAGCAACCGATGCCCTCGA
ATGCCGGCAACAATAACTCAGACTCGGTGTATGTCAACACGGAGTACAGC
AATCGCGAGACGATGCTCTGCGATGCCAATTTCGATCAGCAGGAACTGCT
CTCGGCTGCCCAGCAGCAACCGCCTCCATCGCCGGCCACGGCTCTTTATC
TAAACCACAGTGCTTTGATCCAAGCTCAGGCGGCAGCTGCAGCCGCCGAG
CAACTGCAGCAGCAGCAGCAACAAGCTGCTCGCTTGGCGGTCAGTGCCAA
CGGAGTAGTGCGCAAATTGCCGGAGCATCTGGTGCTCACGCAGCAGACCC
TGGCGGAGGCAGCTGCCCAGCAACACAGCAGCGTACAGGCTTCACCCGCT
TTGAGCACCGCATCCGGACCGTACATACCCATCAGCGAGTGCTTCTCGGG
CAGCCCGAGATTCCTGCCCGGCGTTCCACTGCCCGGCGCAGATTTGGCCA
TACCAAACAACCCCACCACGCCGTTGAACAACTTGGATCCCCAGTTCTAC
GATACGCCGCGTAGTCATAATAACATAGGTCTAAATCTGACCAACGATCA
ATCCTACT
BO11048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1044-PA | 2637 | dos-RA | 239..1132 | 15..908 | 4445 | 99.8 | Plus |
| CG1044-PB | 2397 | dos-RB | 1..892 | 17..908 | 4435 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dos-RA | 3254 | CG1044-RA | 301..1205 | 1..908 | 4460 | 99.6 | Plus |
| dos-RB | 4666 | CG1044-RB | 1713..2617 | 1..908 | 4460 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2592550..2593293 | 165..908 | 3705 | 99.9 | Plus |
| 3L | 28110227 | 3L | 2592334..2592486 | 15..167 | 765 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6513..6861 | 208..573 | 119 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2366 | 523..574 | 118 | 71.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3307 | 550..573 | 111 | 95.8 | Plus |
BO11048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:56:47 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:45 Download gff for
BO11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1044-PA | 228..1132 | 1..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:41 Download gff for
BO11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RB | 1713..2617 | 1..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:27 Download gff for
BO11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RB | 1713..2617 | 1..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:27 Download gff for
BO11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2592323..2592486 | 1..167 | 98 | -> | Plus |
| 3L | 2592553..2593293 | 168..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:41 Download gff for
BO11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2592323..2592486 | 1..167 | 98 | -> | Plus |
| arm_3L | 2592553..2593293 | 168..908 | 99 | | Plus |
BO11048.complete Sequence
2428 bp assembled on 2008-01-16
GenBank Submission: FJ631973
> BO11048.complete
GAAGTTATCAGTCGACATGTTCGATATCAAGACGCCCAAGCGCACCTACT
ACCTGGCTGCTGAGACGGAGGCGGATATGCGCGACTGGGTGAACTGCATC
TGCCAGGTGTGTCACCTACACGACACAAAGCAATCGAATGAGTTGCCATT
AGGAGCTGTGGGTGCAGACGAAAACCGCACCCAACACACGAGCTCCAGTG
GCGGTCTAAGCAACTCCACTCAAAATACGACCACCACATCGTTGCACTCG
TCGGCCGGAACCACAGCGCCTCAGGCTTCGGTCCCAAATGCTGGAGGATC
TGCCCAGCTGCGACGACCGGCGGTCATTGAAGAGCAACCGATGCCCTCGA
ATGCCGGCAACAATAACTCAGACTCGGTGTATGTCAACACGGAGTACAGC
AATCGCGAGACGATGCTCTGCGATGCCAATTTCGATCAGCAGGAACTGCT
CTCGGCTGCCCAGCAGCAACCGCCTCCATCGCCGGCCACGGCTCTTTATC
TAAACCACAGTGCTTTGATCCAAGCTCAGGCGGCAGCTGCAGCCGCCGAG
CAACTGCAGCAGCAGCAGCAACAAGCTGCTCGCTTGGCGGTCAGTGCCAA
CGGAGTAGTGCGCAAATTGCCGGAGCATCTGGTGCTCACGCAGCAGACCC
TGGCGGAGGCAGCTGCCCAGCAACACAGCAGCGTACAGGCTTCACCCGCT
TTGAGCACCGCATCCGGACCGTACATACCCATCAGCGAGTGCTTCTCGGG
CAGCCCGAGATTCCTGCCCGGCGTTCCACTGCCCGGCGCAGATTTGGCCA
TACCAAACAACCCCACCACGCCGTTGAACAACTTGGATCCCAAGTTCTAC
GATACGCCGCGTAGTCATAATAACATAGGTCTAAATCTGACCAACGATCA
ATCCTACTCACCGAAGATAACCAATTTGAGTCTGCAACAATTGGCCAATA
ACAATGCTAGTAAACAACGCTCCGACTCCGATTCGGAAAGCGTTTTCACC
GATGACGATGAGTGGGCTCATCCTTTGCCACTGCGCGAGAATGTGGATCG
CAGTACCCGACCTTCGGATAGTTCCATTGAAAACGAATCATTCGTGCTAA
CGTACTCGCAGCGATTCTCTAAAATGCCCGAGGAAGGAGGAGCGATCGTG
CCACCAGCTGAAAAGAGTTCCAAGCTAGCAGGAGCAGCATCTCTGCCAGA
GGCTGGTGACCAGGGAACGCTGGATAAGCTGGCCAAGGTGCTGAAGAACA
AAAATAATCTCATATTGGACTTTAAGGAGAATGAAAAAATTCCTCGCGAT
CTGCCGCAGCTGTCGGATACGGAAAATACTTCGCCGGCCATTGTGGCCCG
CCGCAACGCGCACTCCGCTTTCATCGAGGAAAGCTATGACATTCCAAGGT
CCCACCAGCAGCCTTACTACAACGTCAACCAGCTGCTGGGCGAGCGACCA
GTCACCAGCCCGCACAATTCCAATCCCATTGCAGCATCCACACCGAATCT
CATGGCGGCCGATCTGGGTGCAGTGGCCGCAATTTCAGCGGCAGCGAATC
CCGGCCTGATGGGTGAGGCACAGGCAGTCGCATCATCGCCCACCAGTGCG
CGCACATTGCCTCGACACTGCTACACCAATGCAGCTCCCACAAAGATGGA
GGGCAATGTTTTTCGATACGACTTCATGGAGCAGGCGGACTGCCCGCCGG
TTAACCGGAAACTTAAGCCAAAGGTGGCGGGTGGATTGCCAGTTGTAGAG
GACAAACCGCCGGAGGAGTTTCCTGCAAAGCCCCCGGTGGGCGTAGATCA
GTTAACCAATAAACTGGGTGCAGCCCAACTGCAGCAGCCCATTGGACCGC
CCAGTGTGGACAGGAAGTGCAAACCGAATGCCTATAAGTTGGGCAATTCG
GCTACCATGTCGCCGGCAACGCGACGTTCCTCCGGTGCCCCTCTCTCAAT
GGTGCTGCCGCATGAAACGGATGTACACTCCCCGGCGGCAGCCAACGCCT
TCTTTCACGAGACCCGCACCCTGCCTCGCCAACAGCATCGGCATCATCCG
AACAGTCCCGGCAGCATGTCGGTACAACATCAGCGCACCGCCTCCGCAGC
GGCTGCCATGATGAGCTTGACGGCAGCAGCTGCTCCCAAGCAGCAAGCGG
CGGCGCAGACTGAGCACAAGCTGCAGTACTTTGATCTGGATGTGACCAAC
AAACCGCCATTGCTAAATCGATCCAGCATGAGTGTGGGGAATCTGTACTC
ACAAGGCGGAAATGGAGCTAGTGGAATGCGATTCGCAGGCGTCGAAGCTG
GCGGAGCTCGAGCGCCAGTGCCTAGCAGCGTGGTCTATAGATCCGTGGAC
TTTGTCAAGACGGAGGCATTTAAGAGGATTCGAGAGGAGCGCGAGAGCAG
CGGCAACAAGGCAAGCTTTCTAGACCAT
BO11048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dos-RA | 2637 | CG1044-PA | 239..2634 | 15..2410 | 11980 | 100 | Plus |
| dos-RB | 2397 | CG1044-PB | 1..2394 | 17..2410 | 11970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dos-RA | 3254 | CG1044-RA | 312..2707 | 15..2410 | 11980 | 100 | Plus |
| dos-RB | 4666 | CG1044-RB | 1724..4119 | 15..2410 | 11980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2592550..2593319 | 165..934 | 3850 | 100 | Plus |
| 3L | 28110227 | 3L | 2593865..2594465 | 1288..1888 | 3005 | 100 | Plus |
| 3L | 28110227 | 3L | 2594520..2595043 | 1887..2410 | 2620 | 100 | Plus |
| 3L | 28110227 | 3L | 2593560..2593801 | 1046..1287 | 1210 | 100 | Plus |
| 3L | 28110227 | 3L | 2592334..2592486 | 15..167 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 2593387..2593499 | 934..1046 | 565 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6513..6861 | 208..573 | 119 | 55.1 | Plus |
BO11048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:21 Download gff for
BO11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RA | 228..2637 | 1..2413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:55 Download gff for
BO11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RA | 331..2719 | 22..2412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:16 Download gff for
BO11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RB | 1731..4119 | 22..2412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:21 Download gff for
BO11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RA | 313..2729 | 1..2421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:32 Download gff for
BO11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dos-RB | 1731..4119 | 22..2412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:32 Download gff for
BO11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2592341..2592486 | 22..167 | 100 | -> | Plus |
| 3L | 2592553..2593319 | 168..934 | 100 | -> | Plus |
| 3L | 2593388..2593499 | 935..1046 | 100 | -> | Plus |
| 3L | 2593561..2593801 | 1047..1287 | 100 | -> | Plus |
| 3L | 2593865..2594465 | 1288..1888 | 100 | -> | Plus |
| 3L | 2594522..2595043 | 1889..2412 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:16 Download gff for
BO11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2592341..2592486 | 22..167 | 100 | -> | Plus |
| arm_3L | 2592553..2593319 | 168..934 | 100 | -> | Plus |
| arm_3L | 2593388..2593499 | 935..1046 | 100 | -> | Plus |
| arm_3L | 2593561..2593801 | 1047..1287 | 100 | -> | Plus |
| arm_3L | 2593865..2594465 | 1288..1888 | 100 | -> | Plus |
| arm_3L | 2594522..2595043 | 1889..2412 | 99 | | Plus |
BO11048.pep Sequence
Translation from 16 to 2428
> BO11048.pep
MFDIKTPKRTYYLAAETEADMRDWVNCICQVCHLHDTKQSNELPLGAVGA
DENRTQHTSSSGGLSNSTQNTTTTSLHSSAGTTAPQASVPNAGGSAQLRR
PAVIEEQPMPSNAGNNNSDSVYVNTEYSNRETMLCDANFDQQELLSAAQQ
QPPPSPATALYLNHSALIQAQAAAAAAEQLQQQQQQAARLAVSANGVVRK
LPEHLVLTQQTLAEAAAQQHSSVQASPALSTASGPYIPISECFSGSPRFL
PGVPLPGADLAIPNNPTTPLNNLDPKFYDTPRSHNNIGLNLTNDQSYSPK
ITNLSLQQLANNNASKQRSDSDSESVFTDDDEWAHPLPLRENVDRSTRPS
DSSIENESFVLTYSQRFSKMPEEGGAIVPPAEKSSKLAGAASLPEAGDQG
TLDKLAKVLKNKNNLILDFKENEKIPRDLPQLSDTENTSPAIVARRNAHS
AFIEESYDIPRSHQQPYYNVNQLLGERPVTSPHNSNPIAASTPNLMAADL
GAVAAISAAANPGLMGEAQAVASSPTSARTLPRHCYTNAAPTKMEGNVFR
YDFMEQADCPPVNRKLKPKVAGGLPVVEDKPPEEFPAKPPVGVDQLTNKL
GAAQLQQPIGPPSVDRKCKPNAYKLGNSATMSPATRRSSGAPLSMVLPHE
TDVHSPAAANAFFHETRTLPRQQHRHHPNSPGSMSVQHQRTASAAAAMMS
LTAAAAPKQQAAAQTEHKLQYFDLDVTNKPPLLNRSSMSVGNLYSQGGNG
ASGMRFAGVEAGGARAPVPSSVVYRSVDFVKTEAFKRIREERESSGNKAS
FLDH
BO11048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dos-PA | 878 | CG1044-PA | 81..878 | 1..798 | 4118 | 100 | Plus |
| dos-PB | 798 | CG1044-PB | 1..798 | 1..798 | 4118 | 100 | Plus |
