Clone BO11049 Report

Search the DGRC for BO11049

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG5541-RA
Protein status:BO11049.pep: validated full length
Sequenced Size:1423

Clone Sequence Records

BO11049.3prime Sequence

819 bp (816 high quality bases) assembled on 2006-04-19

> BO11049.3prime
ATGGTCTAGAAAGCTTGCCAAATCAGTCTTTAGCAGGCCAGCGTTCTCGA
TTTGGTATACGATCTGGGTTTCCTTGTAAGTGCGCGGTTCCGGCTGCACT
ACGTCCAGCTTACGACGTCGTCGCTTTTGGACTACTCGCCACCACAGCAA
AAGGATCAGGAGGAGCAGCAGTAGTCCCAGAAGAACACTACCCGAGATAA
TAAAGGCCATGTAGCTGCGCTCGCGGCACTCATCCGTGATCAGGGATCGA
AGTGGGATATACGGCTGGATTTGGCCTTGTCCGCCAAAATCGGGCGGATG
GAACATCAGTTGATCGCTGTGCAGTCGGAAGAACTCCGCTCGCGGCAATG
GTGGCTCCACATTCCTGTCCAGCTGTTCACAGCTCCAGGCATTATTATAG
CGGATATCGCGTACATTGAGCGCGAAGCTATTGTCGAATTGAAGGGGTTG
TGGTGCCACATTCTCGGCGGTGCCATCGACCCGAGGATCTGCACCTGGTC
GCGAGCTGCGCAGACTGTTGTTGTGGAAACGCAGCTCCAGACGCTCGCTC
AACTGATACGAACGATGAACGGTGAGGCTGCGAAACGCAATCTCACTTGT
GGCCCCGAATTCGTTTCCTCGTATTGTCGCCGCATCTCTGATTTGGGCTT
CCAACCACTCACCATCGACGGATAGGAAATGATTATCACTCAGGCTTAAC
TTGGAGACAAGCTTGAAGGAGAAGGCATGGGAGTGGACCTCCTGGAACTG
ATTACCTCGCAGACTCAGCTCGTTGGTCACCTCGAGCTCGTAGAAGGCAC
GCGTGGGCAGATCGCCCAG

BO11049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-PA 1392 CG5541-RA 589..1389 819..19 4005 100 Minus
CG5541-PB 1392 CG5541-RB 589..1389 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-RB 2304 CG5541-RB 768..1568 819..19 4005 100 Minus
CG5541-RA 2514 CG5541-RA 978..1778 819..19 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15050415..15051106 710..19 3460 100 Minus
X 23542271 X 15050251..15050359 819..711 545 100 Minus
Blast to na_te.dros performed 2015-02-12 04:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 5301..5354 648..700 114 70.4 Plus

BO11049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:48 Download gff for BO11049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-PA 589..1392 18..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:47 Download gff for BO11049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-PB 589..1392 18..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:02 Download gff for BO11049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 993..1793 19..819 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:42 Download gff for BO11049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 978..1778 19..819 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:42 Download gff for BO11049.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15050251..15050359 711..819 100 -> Minus
X 15050415..15051106 19..710 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:02 Download gff for BO11049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14944284..14944392 711..819 100 -> Minus
arm_X 14944448..14945139 19..710 100   Minus

BO11049.5prime Sequence

869 bp (758 high quality bases) assembled on 2006-04-19

> BO11049.5prime
GAAGTTATCAGTCGACATGCGGAATATCAGAAATCTCAAGGATCCGACGA
CATGGACGCGGATTCTCCTGCCGTTCCTCTCCTGCCTACTCCTCGCTGTC
CAGGCGGATCTGGTGAATGTCACCTGCGGGGAGTATGGCAATACCATCAC
TTGCGACTGCAATAACTCCGACCAGACCATGGCTTTGCCATCGTTGCGCG
GAAATGTCTACATGATTGAGATCCGCAATTGCCGCGATCTTCTGGTGGAG
GCCAATCGGCTGGCGAACACGATGGGCCTGCACAAGGTGGTCTTCCGCCA
GGTGGGCCAACTGGTGCTCCGGGAGCACGCGCTCAGTGTGCCGCGATATG
CCAGCAATAAGGCACTGATCGTGGAGTTCGAGCAGACGAACCTCAAGCTG
ATCGAATCGCATGCCATCAACGGCAACATCGAGGAGATCTCATTCGTGGG
CGGGCGGATTGAGCTAATGAAGCCTTTCGGATTCACCACCACCAAGGATA
GTGCCATACTGCTCAAGCTGGACGGGGTCACCATTCAGCGCATCGAGAGT
CAAGCCTTTAAGAAATTCGCCGTGGAGCAGATGAGCATCGCCAATTGCCA
ATTCCTGGGCGATCTGCCCACGCGTGCCTTCTACGAGCTCGAGGTGACCA
ACGAGCTGAGTCTGCGAGGTAATCAGTTCCAGGAGGTCCACTCCCATGCC
TTCTCCTTCAAGCTTGTCTCCAAGTTAAGCCTGAGTGATAATCATTTCCT
ATCCGTCGATGGTGAGTGGTTGGAAGCCCAAATCAGAGATGCGGCGACAA
TACGAGGAAACGAATTCGGGGCCACAAGTGAGATTGCGTTTCGCAGCCTC
ACCGTTCATCGTTCGTATC

BO11049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-PA 1392 CG5541-RA 1..853 17..869 4265 100 Plus
CG5541-PB 1392 CG5541-RB 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-RB 2304 CG5541-RB 179..1032 16..869 4270 100 Plus
CG5541-RA 2514 CG5541-RA 389..1242 16..869 4270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15049758..15050139 173..554 1910 100 Plus
X 23542271 X 15049106..15049265 16..175 800 100 Plus
X 23542271 X 15050200..15050359 554..713 800 100 Plus
X 23542271 X 15050415..15050570 714..869 780 100 Plus
Blast to na_te.dros performed 2015-02-12 01:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 5301..5354 776..724 114 70.4 Minus

BO11049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:49 Download gff for BO11049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-PA 1..853 17..869 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:48 Download gff for BO11049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-PB 1..853 17..869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:22 Download gff for BO11049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 400..1257 9..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:57 Download gff for BO11049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 385..1242 9..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:57 Download gff for BO11049.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15049102..15049265 9..175 97 -> Plus
X 15049761..15050138 176..553 100 -> Plus
X 15050200..15050359 554..713 100 -> Plus
X 15050415..15050570 714..869 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:22 Download gff for BO11049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14943135..14943298 9..175 97 -> Plus
arm_X 14943794..14944171 176..553 100 -> Plus
arm_X 14944233..14944392 554..713 100 -> Plus
arm_X 14944448..14944603 714..869 100   Plus

BO11049.complete Sequence

1423 bp (1423 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ631974

> BO11049.complete
GAAGTTATCAGTCGACATGCGGAATATCAGAAATCTCAAGGATCCGACGA
CATGGACGCGGATTCTCCTGCCGTTCCTCTCCTGCCTACTCCTCGCTGTC
CAGGCGGATCTGGTGAATGTCACCTGCGGGGAGTATGGCAATACCATCAC
TTGCGACTGCAATAACTCCGACCAGACCATGGCTTTGCCATCGTTGCGCG
GAAATGTCTACATGATTGAGATCCGCAATTGCCGCGATCTTCTGGTGGAG
GCCAATCGGCTGGCGAACACGATGGGCCTGCACAAGGTGGTCTTCCGCCA
GGTGGGCCAACTGGTGCTCCGGGAGCACGCGCTCAGTGTGCCGCGATATG
CCAGCAATAAGGCACTGATCGTGGAGTTCGAGCAGACGAACCTCAAGCTG
ATCGAATCGCATGCCATCAACGGCAACATCGAGGAGATCTCATTCGTGGG
CGGGCGGATTGAGCTAATGAAGCCTTTCGGATTCACCACCACCAAGGATA
GTGCCATACTGCTCAAGCTGGACGGGGTCACCATTCAGCGCATCGAGAGT
CAAGCCTTTAAGAAATTCGCCGTGGAGCAGATGAGCATCGCCAATTGCCA
ATTCCTGGGCGATCTGCCCACGCGTGCCTTCTACGAGCTCGAGGTGACCA
ACGAGCTGAGTCTGCGAGGTAATCAGTTCCAGGAGGTCCACTCCCATGCC
TTCTCCTTCAAGCTTGTCTCCAAGTTAAGCCTGAGTGATAATCATTTCCT
ATCCGTCGATGGTGAGTGGTTGGAAGCCCAAATCAGAGATGCGGCGACAA
TACGAGGAAACGAATTCGGGGCCACAAGTGAGATTGCGTTTCGCAGCCTC
ACCGTTCATCGTTCGTATCAGTTGAGCGAGCGTCTGGAGCTGCGTTTCCA
CAACAACAGTCTGCGCAGCTCGCGACCAGGTGCAGATCCTCGGGTCGATG
GCACCGCCGAGAATGTGGCACCACAACCCCTTCAATTCGACAATAGCTTC
GCGCTCAATGTACGCGATATCCGCTATAATAATGCCTGGAGCTGTGAACA
GCTGGACAGGAATGTGGAGCCACCATTGCCGCGAGCGGAGTTCTTCCGAC
TGCACAGCGATCAACTGATGTTCCATCCGCCCGATTTTGGCGGACAAGGC
CAAATCCAGCCGTATATCCCACTTCGATCCCTGATCACGGATGAGTGCCG
CGAGCGCAGCTACATGGCCTTTATTATCTCGGGTAGTGTTCTTCTGGGAC
TACTGCTGCTCCTCCTGATCCTTTTGCTGTGGTGGCGAGTAGTCCAAAAG
CGACGACGTCGTAAGCTGGACGTAGTGCAGCCGGAACCGCGCACTTACAA
GGAAACCCAGATCGTATACCAAATCGAGAACGCTGGCCTGCTAAAGACTG
ATTTGGCAAGCTTTCTAGACCAT

BO11049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-RB 1392 CG5541-PB 1..1389 17..1405 6945 100 Plus
CG5541-RA 1392 CG5541-PA 1..1389 17..1405 6945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-RB 2304 CG5541-RB 179..1568 16..1405 6950 100 Plus
CG5541-RA 2514 CG5541-RA 389..1778 16..1405 6950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15050415..15051106 714..1405 3460 100 Plus
X 23542271 X 15049758..15050139 173..554 1910 100 Plus
X 23542271 X 15049106..15049265 16..175 800 100 Plus
X 23542271 X 15050200..15050359 554..713 800 100 Plus
Blast to na_te.dros performed 2014-11-27 13:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 5301..5354 776..724 114 70.4 Minus

BO11049.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:49 Download gff for BO11049.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RB 1..1392 17..1406 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:46 Download gff for BO11049.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RB 1607..3000 9..1405 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:20:48 Download gff for BO11049.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 405..1793 17..1407 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:49 Download gff for BO11049.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RB 1607..3000 9..1405 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:56 Download gff for BO11049.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 390..1778 17..1407 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:56 Download gff for BO11049.complete
Subject Subject Range Query Range Percent Splice Strand
X 15049107..15049265 17..175 100 -> Plus
X 15049761..15050138 176..553 100 -> Plus
X 15050200..15050359 554..713 100 -> Plus
X 15050415..15051106 714..1407 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:20:48 Download gff for BO11049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14943140..14943298 17..175 100 -> Plus
arm_X 14943794..14944171 176..553 100 -> Plus
arm_X 14944233..14944392 554..713 100 -> Plus
arm_X 14944448..14945139 714..1407 99   Plus

BO11049.pep Sequence

Translation from 16 to 1423

> BO11049.pep
MRNIRNLKDPTTWTRILLPFLSCLLLAVQADLVNVTCGEYGNTITCDCNN
SDQTMALPSLRGNVYMIEIRNCRDLLVEANRLANTMGLHKVVFRQVGQLV
LREHALSVPRYASNKALIVEFEQTNLKLIESHAINGNIEEISFVGGRIEL
MKPFGFTTTKDSAILLKLDGVTIQRIESQAFKKFAVEQMSIANCQFLGDL
PTRAFYELEVTNELSLRGNQFQEVHSHAFSFKLVSKLSLSDNHFLSVDGE
WLEAQIRDAATIRGNEFGATSEIAFRSLTVHRSYQLSERLELRFHNNSLR
SSRPGADPRVDGTAENVAPQPLQFDNSFALNVRDIRYNNAWSCEQLDRNV
EPPLPRAEFFRLHSDQLMFHPPDFGGQGQIQPYIPLRSLITDECRERSYM
AFIISGSVLLGLLLLLLILLLWWRVVQKRRRRKLDVVQPEPRTYKETQIV
YQIENAGLLKTDLASFLDH

BO11049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-PB 463 CG5541-PB 1..463 1..463 2384 100 Plus
CG5541-PA 463 CG5541-PA 1..463 1..463 2384 100 Plus