Clone Sequence Records
BO11049.3prime Sequence
819 bp (816 high quality bases) assembled on 2006-04-19
> BO11049.3prime
ATGGTCTAGAAAGCTTGCCAAATCAGTCTTTAGCAGGCCAGCGTTCTCGA
TTTGGTATACGATCTGGGTTTCCTTGTAAGTGCGCGGTTCCGGCTGCACT
ACGTCCAGCTTACGACGTCGTCGCTTTTGGACTACTCGCCACCACAGCAA
AAGGATCAGGAGGAGCAGCAGTAGTCCCAGAAGAACACTACCCGAGATAA
TAAAGGCCATGTAGCTGCGCTCGCGGCACTCATCCGTGATCAGGGATCGA
AGTGGGATATACGGCTGGATTTGGCCTTGTCCGCCAAAATCGGGCGGATG
GAACATCAGTTGATCGCTGTGCAGTCGGAAGAACTCCGCTCGCGGCAATG
GTGGCTCCACATTCCTGTCCAGCTGTTCACAGCTCCAGGCATTATTATAG
CGGATATCGCGTACATTGAGCGCGAAGCTATTGTCGAATTGAAGGGGTTG
TGGTGCCACATTCTCGGCGGTGCCATCGACCCGAGGATCTGCACCTGGTC
GCGAGCTGCGCAGACTGTTGTTGTGGAAACGCAGCTCCAGACGCTCGCTC
AACTGATACGAACGATGAACGGTGAGGCTGCGAAACGCAATCTCACTTGT
GGCCCCGAATTCGTTTCCTCGTATTGTCGCCGCATCTCTGATTTGGGCTT
CCAACCACTCACCATCGACGGATAGGAAATGATTATCACTCAGGCTTAAC
TTGGAGACAAGCTTGAAGGAGAAGGCATGGGAGTGGACCTCCTGGAACTG
ATTACCTCGCAGACTCAGCTCGTTGGTCACCTCGAGCTCGTAGAAGGCAC
GCGTGGGCAGATCGCCCAG
BO11049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5541-PA | 1392 | CG5541-RA | 589..1389 | 819..19 | 4005 | 100 | Minus |
CG5541-PB | 1392 | CG5541-RB | 589..1389 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5541-RB | 2304 | CG5541-RB | 768..1568 | 819..19 | 4005 | 100 | Minus |
CG5541-RA | 2514 | CG5541-RA | 978..1778 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15050415..15051106 | 710..19 | 3460 | 100 | Minus |
X | 23542271 | X | 15050251..15050359 | 819..711 | 545 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 5301..5354 | 648..700 | 114 | 70.4 | Plus |
BO11049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:48 Download gff for
BO11049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-PA | 589..1392 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:47 Download gff for
BO11049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-PB | 589..1392 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:02 Download gff for
BO11049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RA | 993..1793 | 19..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:42 Download gff for
BO11049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RA | 978..1778 | 19..819 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:42 Download gff for
BO11049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15050251..15050359 | 711..819 | 100 | -> | Minus |
X | 15050415..15051106 | 19..710 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:02 Download gff for
BO11049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14944284..14944392 | 711..819 | 100 | -> | Minus |
arm_X | 14944448..14945139 | 19..710 | 100 | | Minus |
BO11049.5prime Sequence
869 bp (758 high quality bases) assembled on 2006-04-19
> BO11049.5prime
GAAGTTATCAGTCGACATGCGGAATATCAGAAATCTCAAGGATCCGACGA
CATGGACGCGGATTCTCCTGCCGTTCCTCTCCTGCCTACTCCTCGCTGTC
CAGGCGGATCTGGTGAATGTCACCTGCGGGGAGTATGGCAATACCATCAC
TTGCGACTGCAATAACTCCGACCAGACCATGGCTTTGCCATCGTTGCGCG
GAAATGTCTACATGATTGAGATCCGCAATTGCCGCGATCTTCTGGTGGAG
GCCAATCGGCTGGCGAACACGATGGGCCTGCACAAGGTGGTCTTCCGCCA
GGTGGGCCAACTGGTGCTCCGGGAGCACGCGCTCAGTGTGCCGCGATATG
CCAGCAATAAGGCACTGATCGTGGAGTTCGAGCAGACGAACCTCAAGCTG
ATCGAATCGCATGCCATCAACGGCAACATCGAGGAGATCTCATTCGTGGG
CGGGCGGATTGAGCTAATGAAGCCTTTCGGATTCACCACCACCAAGGATA
GTGCCATACTGCTCAAGCTGGACGGGGTCACCATTCAGCGCATCGAGAGT
CAAGCCTTTAAGAAATTCGCCGTGGAGCAGATGAGCATCGCCAATTGCCA
ATTCCTGGGCGATCTGCCCACGCGTGCCTTCTACGAGCTCGAGGTGACCA
ACGAGCTGAGTCTGCGAGGTAATCAGTTCCAGGAGGTCCACTCCCATGCC
TTCTCCTTCAAGCTTGTCTCCAAGTTAAGCCTGAGTGATAATCATTTCCT
ATCCGTCGATGGTGAGTGGTTGGAAGCCCAAATCAGAGATGCGGCGACAA
TACGAGGAAACGAATTCGGGGCCACAAGTGAGATTGCGTTTCGCAGCCTC
ACCGTTCATCGTTCGTATC
BO11049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5541-PA | 1392 | CG5541-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
CG5541-PB | 1392 | CG5541-RB | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5541-RB | 2304 | CG5541-RB | 179..1032 | 16..869 | 4270 | 100 | Plus |
CG5541-RA | 2514 | CG5541-RA | 389..1242 | 16..869 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15049758..15050139 | 173..554 | 1910 | 100 | Plus |
X | 23542271 | X | 15049106..15049265 | 16..175 | 800 | 100 | Plus |
X | 23542271 | X | 15050200..15050359 | 554..713 | 800 | 100 | Plus |
X | 23542271 | X | 15050415..15050570 | 714..869 | 780 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 5301..5354 | 776..724 | 114 | 70.4 | Minus |
BO11049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:49 Download gff for
BO11049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-PA | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:48 Download gff for
BO11049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-PB | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:22 Download gff for
BO11049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RA | 400..1257 | 9..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:57 Download gff for
BO11049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RA | 385..1242 | 9..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:57 Download gff for
BO11049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15049102..15049265 | 9..175 | 97 | -> | Plus |
X | 15049761..15050138 | 176..553 | 100 | -> | Plus |
X | 15050200..15050359 | 554..713 | 100 | -> | Plus |
X | 15050415..15050570 | 714..869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:22 Download gff for
BO11049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14943135..14943298 | 9..175 | 97 | -> | Plus |
arm_X | 14943794..14944171 | 176..553 | 100 | -> | Plus |
arm_X | 14944233..14944392 | 554..713 | 100 | -> | Plus |
arm_X | 14944448..14944603 | 714..869 | 100 | | Plus |
BO11049.complete Sequence
1423 bp (1423 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631974
> BO11049.complete
GAAGTTATCAGTCGACATGCGGAATATCAGAAATCTCAAGGATCCGACGA
CATGGACGCGGATTCTCCTGCCGTTCCTCTCCTGCCTACTCCTCGCTGTC
CAGGCGGATCTGGTGAATGTCACCTGCGGGGAGTATGGCAATACCATCAC
TTGCGACTGCAATAACTCCGACCAGACCATGGCTTTGCCATCGTTGCGCG
GAAATGTCTACATGATTGAGATCCGCAATTGCCGCGATCTTCTGGTGGAG
GCCAATCGGCTGGCGAACACGATGGGCCTGCACAAGGTGGTCTTCCGCCA
GGTGGGCCAACTGGTGCTCCGGGAGCACGCGCTCAGTGTGCCGCGATATG
CCAGCAATAAGGCACTGATCGTGGAGTTCGAGCAGACGAACCTCAAGCTG
ATCGAATCGCATGCCATCAACGGCAACATCGAGGAGATCTCATTCGTGGG
CGGGCGGATTGAGCTAATGAAGCCTTTCGGATTCACCACCACCAAGGATA
GTGCCATACTGCTCAAGCTGGACGGGGTCACCATTCAGCGCATCGAGAGT
CAAGCCTTTAAGAAATTCGCCGTGGAGCAGATGAGCATCGCCAATTGCCA
ATTCCTGGGCGATCTGCCCACGCGTGCCTTCTACGAGCTCGAGGTGACCA
ACGAGCTGAGTCTGCGAGGTAATCAGTTCCAGGAGGTCCACTCCCATGCC
TTCTCCTTCAAGCTTGTCTCCAAGTTAAGCCTGAGTGATAATCATTTCCT
ATCCGTCGATGGTGAGTGGTTGGAAGCCCAAATCAGAGATGCGGCGACAA
TACGAGGAAACGAATTCGGGGCCACAAGTGAGATTGCGTTTCGCAGCCTC
ACCGTTCATCGTTCGTATCAGTTGAGCGAGCGTCTGGAGCTGCGTTTCCA
CAACAACAGTCTGCGCAGCTCGCGACCAGGTGCAGATCCTCGGGTCGATG
GCACCGCCGAGAATGTGGCACCACAACCCCTTCAATTCGACAATAGCTTC
GCGCTCAATGTACGCGATATCCGCTATAATAATGCCTGGAGCTGTGAACA
GCTGGACAGGAATGTGGAGCCACCATTGCCGCGAGCGGAGTTCTTCCGAC
TGCACAGCGATCAACTGATGTTCCATCCGCCCGATTTTGGCGGACAAGGC
CAAATCCAGCCGTATATCCCACTTCGATCCCTGATCACGGATGAGTGCCG
CGAGCGCAGCTACATGGCCTTTATTATCTCGGGTAGTGTTCTTCTGGGAC
TACTGCTGCTCCTCCTGATCCTTTTGCTGTGGTGGCGAGTAGTCCAAAAG
CGACGACGTCGTAAGCTGGACGTAGTGCAGCCGGAACCGCGCACTTACAA
GGAAACCCAGATCGTATACCAAATCGAGAACGCTGGCCTGCTAAAGACTG
ATTTGGCAAGCTTTCTAGACCAT
BO11049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5541-RB | 1392 | CG5541-PB | 1..1389 | 17..1405 | 6945 | 100 | Plus |
CG5541-RA | 1392 | CG5541-PA | 1..1389 | 17..1405 | 6945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5541-RB | 2304 | CG5541-RB | 179..1568 | 16..1405 | 6950 | 100 | Plus |
CG5541-RA | 2514 | CG5541-RA | 389..1778 | 16..1405 | 6950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15050415..15051106 | 714..1405 | 3460 | 100 | Plus |
X | 23542271 | X | 15049758..15050139 | 173..554 | 1910 | 100 | Plus |
X | 23542271 | X | 15049106..15049265 | 16..175 | 800 | 100 | Plus |
X | 23542271 | X | 15050200..15050359 | 554..713 | 800 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 5301..5354 | 776..724 | 114 | 70.4 | Minus |
BO11049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:49 Download gff for
BO11049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RB | 1..1392 | 17..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:46 Download gff for
BO11049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RB | 1607..3000 | 9..1405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:20:48 Download gff for
BO11049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RA | 405..1793 | 17..1407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:49 Download gff for
BO11049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RB | 1607..3000 | 9..1405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:56 Download gff for
BO11049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5541-RA | 390..1778 | 17..1407 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:56 Download gff for
BO11049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15049107..15049265 | 17..175 | 100 | -> | Plus |
X | 15049761..15050138 | 176..553 | 100 | -> | Plus |
X | 15050200..15050359 | 554..713 | 100 | -> | Plus |
X | 15050415..15051106 | 714..1407 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:20:48 Download gff for
BO11049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14943140..14943298 | 17..175 | 100 | -> | Plus |
arm_X | 14943794..14944171 | 176..553 | 100 | -> | Plus |
arm_X | 14944233..14944392 | 554..713 | 100 | -> | Plus |
arm_X | 14944448..14945139 | 714..1407 | 99 | | Plus |
BO11049.pep Sequence
Translation from 16 to 1423
> BO11049.pep
MRNIRNLKDPTTWTRILLPFLSCLLLAVQADLVNVTCGEYGNTITCDCNN
SDQTMALPSLRGNVYMIEIRNCRDLLVEANRLANTMGLHKVVFRQVGQLV
LREHALSVPRYASNKALIVEFEQTNLKLIESHAINGNIEEISFVGGRIEL
MKPFGFTTTKDSAILLKLDGVTIQRIESQAFKKFAVEQMSIANCQFLGDL
PTRAFYELEVTNELSLRGNQFQEVHSHAFSFKLVSKLSLSDNHFLSVDGE
WLEAQIRDAATIRGNEFGATSEIAFRSLTVHRSYQLSERLELRFHNNSLR
SSRPGADPRVDGTAENVAPQPLQFDNSFALNVRDIRYNNAWSCEQLDRNV
EPPLPRAEFFRLHSDQLMFHPPDFGGQGQIQPYIPLRSLITDECRERSYM
AFIISGSVLLGLLLLLLILLLWWRVVQKRRRRKLDVVQPEPRTYKETQIV
YQIENAGLLKTDLASFLDH
BO11049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5541-PB | 463 | CG5541-PB | 1..463 | 1..463 | 2384 | 100 | Plus |
CG5541-PA | 463 | CG5541-PA | 1..463 | 1..463 | 2384 | 100 | Plus |