Clone BO11052 Report

Search the DGRC for BO11052

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG17646-RA
Protein status:BO11052.pep:
Sequenced Size:2332

Clone Sequence Records

BO11052.3prime Sequence

810 bp (739 high quality bases) assembled on 2006-04-19

> BO11052.3prime
ATGGTCTAGAAAGCTTGCTCGCTTGTTGAGCTTGTGCCACAGCGTGATGA
GGGTCAGCACATGCATGACTCCAATCACGATGCCCATGAGGATCAGGCAG
TCGGACATGTGCACATCCGATATCATCATGTACTTGAGAAAGACCTTCGG
GCTGCGGAAGTGGCAATACATCGCAGTCTCGGGGCACTCCAGAAAGGGTC
GATCCATGCCGTAAATGGCGTTCAACGCCCCGTGGAATCCGGCCCGGAAG
TAACTCAGGTGCCACATCCATCGGAAGAGGGGCGTGATGTCGATGTAGCG
CGTGCAGAATCCAAAAACGGAGAACATCACCGCCAGAATGGGTCCCAGAA
ACACGGCAAGCTTGGTTGGCAACGTGGCTCCCACGAAGAAGCCCCAGGCT
TGGGCACTCAAAGAGGCCATTATGCCCAGCAGCATGAAGTAGTAGATCCG
GAATGAGTCCGTGGCATCGTTTCCAGTCAGATGCACGCTAATGATAATGT
ACATGGCGGTGCAGAGGCTCTGGAAGGGTATTTCGAAGGAGATCAGCGAG
AGGAAGTAGGGACCCAGTTTGTACCAGCGGTTGAAGTGCTCCCGTGTCAA
CATGTCAATTTCCAGCGGAAATGTCAAGACCACAGCCATTTTACCGGTGT
AGACCAAGAGCAGCGTGGAGCCGTACAGATACACGTAGTTTCCCAGCACA
CTCTGGGCATTGTTGCCCACGTTCATGTACAGATACCCGAAGACGACTCC
GATGAAAATGTGCGAGAAGATGCGGGCCAGCAGCAGAAAGTAGTTTCGCT
TGGCGCAGAT

BO11052.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-PB 2301 CG17646-RB 1510..2298 807..19 3895 99.7 Minus
CG17646-PA 2301 CG17646-RA 1510..2298 807..19 3895 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-RA 3421 CG17646-RA 2104..2892 807..19 3915 99.7 Minus
CG17646-RB 2999 CG17646-RB 1682..2470 807..19 3915 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1749740..1750083 362..19 1720 100 Minus
2L 23513712 2L 1747692..1747860 789..621 845 100 Minus
2L 23513712 2L 1749515..1749676 522..361 795 99.4 Minus
2L 23513712 2L 1748774..1748874 620..520 490 99 Minus
Blast to na_te.dros performed on 2015-02-11 11:33:11 has no hits.

BO11052.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:52 Download gff for BO11052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-PB 1507..2301 15..810 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:53 Download gff for BO11052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-PA 1507..2301 15..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:57:30 Download gff for BO11052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 1679..2474 14..810 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:51 Download gff for BO11052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 1679..2474 14..810 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:51 Download gff for BO11052.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1746009..1746029 790..810 95 -> Minus
2L 1747692..1747860 621..789 100 -> Minus
2L 1748774..1748874 520..620 99 -> Minus
2L 1749518..1749676 361..519 99 -> Minus
2L 1749742..1750087 14..360 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:57:30 Download gff for BO11052.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1746009..1746029 790..810 95 -> Minus
arm_2L 1747692..1747860 621..789 100 -> Minus
arm_2L 1748774..1748874 520..620 99 -> Minus
arm_2L 1749518..1749676 361..519 99 -> Minus
arm_2L 1749742..1750087 14..360 99   Minus

BO11052.5prime Sequence

908 bp (761 high quality bases) assembled on 2006-04-19

> BO11052.5prime
GAAGTTATCAGTCGACATGACCCTCTTGCCAGACATCAAGGCATCGGATG
CCGCTTGCTGCGTGGGAGGTGCGAACAGCGATGCCAGCAGCAGTTCCGGC
GTCTGCAGCCTCAAGGGTCACCATGGTGACCCCGACAGCGGTTGCCTGGG
CATCAACTGTTGCACCACGGCGGCCAGCTCGGAGCTGTCCATCGACGAGA
CGTCATCGACCTCGTCCCGAGGCTCCTGCGAGCTGACCAGCAAGGTGACC
AACGACCTGAACGGATTCCAGAGTCCGAACTACCACCAGGCGGTGGCGCA
TGCCAACTTCGACCACTGCGATCCCGTGGACATCCAGTTCGCCGACGTGC
GCTACACAGTGAAAAAGTTCTCCTTCCCGGAGCGGAAGTTCGTCACCAAG
GAGATCCTTCATGGCCTGAACGGCAGCTTCCGGTCTGGCGAACTCACAGC
CATCATGGGTCCTTCGGGCGCCGGCAAGAGCACGCTGCTGAATGTGATGT
CCGGATTTTGCTCCACTGGCGTGTCGGGCGATATCCGGGTTAATAGAAAG
CCCATGGCTCCCAGCTCCGAGAGGTTTCGCCAAATGCTGTGCTACATCCA
CCAGGACGATCTGCTGCGTCCACAGCTGTTGGTCGGCGAGATAATGCTGC
TGGCGGCACATCTGAAGCTGGGCTTCAAGGTCACCAAGGCGTACAAAATG
GATCTGATCAAACACATCTTATCGCTGCTGGGTCTGGACCATCGCTACAA
TGTGCCCACTGGGAAGCTTTCGGGTGGGCAGAAGAAGCGACTCGCAATCG
CCCTGGAGCTGATAAGTAATCCTCCCGTGCTATATCTGGATGAGCCGACG
ACTGGCCTGGACAGCTCCTCGTGCAGCTCCTGCGTGGCTCTGCTGAAGAA
ACTGGCGT

BO11052.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-PB 2301 CG17646-RB 1..892 17..908 4235 98.9 Plus
CG17646-PA 2301 CG17646-RA 1..892 17..908 4235 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-RA 3421 CG17646-RA 593..1486 15..908 4335 99 Plus
CG17646-RB 2999 CG17646-RB 171..1064 15..908 4335 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1741699..1742076 15..392 1815 98.7 Plus
2L 23513712 2L 1743344..1743540 510..706 955 99 Plus
2L 23513712 2L 1743633..1743779 706..852 705 98.6 Plus
2L 23513712 2L 1742142..1742260 392..510 595 100 Plus
2L 23513712 2L 1744923..1744978 853..908 280 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:32:16 has no hits.

BO11052.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:53 Download gff for BO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-PB 1..892 17..908 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:54 Download gff for BO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-PA 1..892 17..908 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:44 Download gff for BO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 162..1064 8..908 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:39 Download gff for BO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 162..1064 8..908 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:39 Download gff for BO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1741690..1742076 8..392 97 -> Plus
2L 1742143..1742260 393..510 100 -> Plus
2L 1743345..1743540 511..706 98 -> Plus
2L 1743634..1743779 707..852 98 -> Plus
2L 1744923..1744978 853..908 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:44 Download gff for BO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1741690..1742076 8..392 97 -> Plus
arm_2L 1742143..1742260 393..510 100 -> Plus
arm_2L 1743345..1743540 511..706 98 -> Plus
arm_2L 1743634..1743779 707..852 98 -> Plus
arm_2L 1744923..1744978 853..908 100   Plus

BO11052.complete Sequence

2332 bp assembled on 2008-01-16

GenBank Submission: FJ631975

> BO11052.complete
GAAGTTATCAGTCGACATGACCCTCTTGCCAGACATCAAGGCATCGGATG
CCGCTTGCTGCGTGGGAGGTGCGAACAGCGATGCCAGCAGCAGTTCCGGC
GTCTGCAGCCTCAAGGGTCACCATGGTGACCCCGACAGCGGTTGCCTGGG
CATCAACTGTTGCACCACGGCGGCCAGCTCGGAGCTGTCCATCGACGAGA
CGTCATCGACCTCGTCCCGAGGCTCCTGCGAGCTGACCAGCAAGGTGACC
AACGACCTGAACGGATTCCAGAGTCCGAACTACCACCAGGCGGTGGCGCA
TGCCAACTTCGACCACTGCGATCCCGTGGACATCCAGTTCGCCGACGTGC
GCTACACAGTGAAAAAGTTCTCCTTCCCGGAGCGGAAGTTCGTCACCAAG
GAGATCCTTCATGGCCTGAACGGCAGCTTCCGGTCTGGCGAACTCACAGC
CATCATGGGTCCTTCGGGCGCCGGCAAGAGCACGCTGCTGAATGTGATGT
CCGGATTTTGCTCCACTGGCGTGTCGGGCGATATCCGGGTTAATAGAAAG
CCCATGGCTCCCAGCTCCGAGAGGTTTCGCCAAATGCTGTGCTACATCCA
CCAGGACGATCTGCTGCGTCCACAGCTGTTGGTCGGCGAGATAATGCTGC
TGGCGGCACATCTGAAGCTGGGCTTCAAGGTCACCAAGGCGTACAAAATG
GATCTGATCAAACACATCTTATCGCTGCTGGGTCTGGACCATCGCTACAA
TGTGCCCACTGGGAAGCTTTCGGGTGGCCAGAAGAAGCGACTCGCAATCG
CCCTGGAGCTGATAAGTAATCCTCCCGTGCTATATCTGGATGAGCCGACG
ACTGGCCTGGACAGCTCCTCGTGCAGCTCCTGCGTGGCTCTGCTGAAGAA
ACTGGCGTCGCAGGGCCACACGATAGTCTGCACCATCCATCAGCCGAGTG
CCCTGATCTTCGAGATGTTCGACAAGCTCTACACCGTCGTCGATGGCCAC
TGCATGTACCAAGGACCTGTGCGCGAACTGGTGCCCTTCCTGGCCGACCA
GCAGCTCGTCTGCCCGAGTTACCACAACCCAGCTGACTATCTACTGGAAG
TGGCCGTGGGCGAGCATCAACGTGACCTGAATGAGCTAATCCATGCGGCC
AATAAAAAGTATTACGAGGATGTGGATCGCCATAGGTATATGAGCAGTGA
TGATATGGCACGCCTCGTGGAAAGCATTAAAGAAAACATGGGCGGCAAGG
CAGTGGTAAAAACCAGTGAAGCGCTGGCAGCATTTGCGGCGGCGCAATTC
TCCAGCTTCGACTATGTAAAGCCCTCGCCGCAGGAGCTGGCTCTGGAGGA
GATCAAGGCACTGAGCGGCGGCCCCGAGAGCGCGGATCCCGATCTCCTCG
AGAAAAATCTGAGGCCACAGCCACAGCCGCTTGCCAAAGCCGGTGAGCTT
GCCAGGCCGCCGAATGCCATTCGATCGGCCTCGTTCCTCATGCAGTATGT
GCTCCTGATGCAGCGCATCTTGATCTGCGCCAAGCGAAACTACTTTCTGC
TGCTGGCCCGCATCTTCTCGCACATTTTCATCGGAGTCGTCTTCGGGTAT
CTGTACATGAACGTGGGCAACAATGCCCAGAGTGTGCTGGGAAACTACGT
GTATCTGTACGGCTCCACGCTGCTCTTGGTCTACACCGGTAAAATGGCTG
TGGTCTTGACATTTCCGCTGGAAATTGACATGTTGACACGGGAGCACTTC
AACCGCTGGTACAAACTGGGTCCCTACTTCCTCTCGCTGATCTCCTTCGA
AATACCCTTCCAGAGCCTCTGCACCGCCATGTACATTATCATTAGCGTGC
ATCTGACTGGAAACGATGCCACGGACTCATTCCGGATCTACTACTTCATG
CTGCTGGGCATAATGGCCTCTTTGAGTGCCCAAGCCTGGGGCTTCTTCGT
GGGAGCCACGTTGCCAACCAAGCTTGCCGTGTTTCTGGGACCCATTCTGG
CGGTGATGTTCTCCGTTTTTGGATTCTGCACGCGCTACATCGACATCACG
CCCCTCTTCCGATGGATGTGGCACCTGAGTTACTTCCGGGCCGGATTCCA
CGGGGCGTTGAACGCCATTTACGGCATGGATCGACCCTTTCTGGAGTGCC
CCGAGACTGCGATGTATTGCCACTTCCGCAGCCCGAAGGTCTTTCTCAAG
TACATGATGATATCGGATGTGCACATGTCCGACTGCCTGATCCTCATGGG
CATCGTGATTGGAGTCATGCATGTGCTGACCCTCATCACGCTGTGGCACA
AGCTCAACAAGCGAGCAAGCTTTCTAGACCAT

BO11052.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-RA 2301 CG17646-PA 1..2298 17..2314 11295 99.4 Plus
CG17646-RB 2301 CG17646-PB 1..2298 17..2314 11295 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-RA 3421 CG17646-RA 593..2892 15..2314 11305 99.4 Plus
CG17646-RB 2999 CG17646-RB 171..2470 15..2314 11305 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1741699..1742076 15..392 1815 98.7 Plus
2L 23513712 2L 1749740..1750083 1971..2314 1720 100 Plus
2L 23513712 2L 1745717..1746029 1231..1543 1550 99.7 Plus
2L 23513712 2L 1744923..1745161 853..1091 1165 99.2 Plus
2L 23513712 2L 1743344..1743540 510..706 955 99 Plus
2L 23513712 2L 1747692..1747860 1544..1712 845 100 Plus
2L 23513712 2L 1749515..1749676 1811..1972 795 99.4 Plus
2L 23513712 2L 1743633..1743779 706..852 720 99.3 Plus
2L 23513712 2L 1745221..1745361 1092..1232 705 100 Plus
2L 23513712 2L 1742142..1742260 392..510 595 100 Plus
2L 23513712 2L 1748774..1748874 1713..1813 490 99 Plus
Blast to na_te.dros performed on 2014-11-28 00:05:56 has no hits.

BO11052.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:22 Download gff for BO11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RA 1..2301 17..2318 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:43 Download gff for BO11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RA 593..2890 17..2316 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:42 Download gff for BO11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 173..2470 17..2316 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:22 Download gff for BO11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RA 582..2894 8..2319 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:15 Download gff for BO11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 173..2470 17..2316 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:15 Download gff for BO11052.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1749742..1750083 1973..2316 99   Plus
2L 1745719..1746029 1233..1543 99 -> Plus
2L 1747692..1747860 1544..1712 100 -> Plus
2L 1748774..1748874 1713..1813 99 -> Plus
2L 1749518..1749676 1814..1972 99 -> Plus
2L 1741701..1742076 17..392 98 -> Plus
2L 1742143..1742260 393..510 100 -> Plus
2L 1743345..1743540 511..706 98 -> Plus
2L 1743634..1743779 707..852 99 -> Plus
2L 1744923..1745161 853..1091 99 -> Plus
2L 1745221..1745361 1092..1232 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:42 Download gff for BO11052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1743634..1743779 707..852 99 -> Plus
arm_2L 1742143..1742260 393..510 100 -> Plus
arm_2L 1743345..1743540 511..706 98 -> Plus
arm_2L 1741701..1742076 17..392 98 -> Plus
arm_2L 1744923..1745161 853..1091 99 -> Plus
arm_2L 1745221..1745361 1092..1232 100 -> Plus
arm_2L 1745719..1746029 1233..1543 99 -> Plus
arm_2L 1747692..1747860 1544..1712 100 -> Plus
arm_2L 1748774..1748874 1713..1813 99 -> Plus
arm_2L 1749518..1749676 1814..1972 99 -> Plus
arm_2L 1749742..1750083 1973..2316 99   Plus

BO11052.pep Sequence

Translation from 16 to 2332

> BO11052.pep
MTLLPDIKASDAACCVGGANSDASSSSGVCSLKGHHGDPDSGCLGINCCT
TAASSELSIDETSSTSSRGSCELTSKVTNDLNGFQSPNYHQAVAHANFDH
CDPVDIQFADVRYTVKKFSFPERKFVTKEILHGLNGSFRSGELTAIMGPS
GAGKSTLLNVMSGFCSTGVSGDIRVNRKPMAPSSERFRQMLCYIHQDDLL
RPQLLVGEIMLLAAHLKLGFKVTKAYKMDLIKHILSLLGLDHRYNVPTGK
LSGGQKKRLAIALELISNPPVLYLDEPTTGLDSSSCSSCVALLKKLASQG
HTIVCTIHQPSALIFEMFDKLYTVVDGHCMYQGPVRELVPFLADQQLVCP
SYHNPADYLLEVAVGEHQRDLNELIHAANKKYYEDVDRHRYMSSDDMARL
VESIKENMGGKAVVKTSEALAAFAAAQFSSFDYVKPSPQELALEEIKALS
GGPESADPDLLEKNLRPQPQPLAKAGELARPPNAIRSASFLMQYVLLMQR
ILICAKRNYFLLLARIFSHIFIGVVFGYLYMNVGNNAQSVLGNYVYLYGS
TLLLVYTGKMAVVLTFPLEIDMLTREHFNRWYKLGPYFLSLISFEIPFQS
LCTAMYIIISVHLTGNDATDSFRIYYFMLLGIMASLSAQAWGFFVGATLP
TKLAVFLGPILAVMFSVFGFCTRYIDITPLFRWMWHLSYFRAGFHGALNA
IYGMDRPFLECPETAMYCHFRSPKVFLKYMMISDVHMSDCLILMGIVIGV
MHVLTLITLWHKLNKRASFLDH

BO11052.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-PA 766 CG17646-PA 1..766 1..766 4005 100 Plus
CG17646-PB 766 CG17646-PB 1..766 1..766 4005 100 Plus
CG3164-PD 698 CG3164-PD 44..694 104..763 1089 37.9 Plus
CG3164-PB 698 CG3164-PB 44..694 104..763 1089 37.9 Plus
CG3164-PC 699 CG3164-PC 45..695 104..763 1089 37.9 Plus