Clone Sequence Records
BO11056.3prime Sequence
943 bp (833 high quality bases) assembled on 2006-04-19
> BO11056.3prime
ATGGTCTAGAAAGCTTGCGTTGCCCACACAGTTGTTGGCAACTGGGCTCG
CAACTCCATTCATAACTCCCACGGCACCAAATCCGCCACACTCATCATCA
ATAATACCAACATCGACAGCATTATCGCTGTGGGTCAGCACTTCTGGCGC
ATCCGCCGCCTGCTCCACATCTTTGGAGCTCAGCTTGCGCTTCGATGCTG
GTGTGGCCGCCAGTCGCGATCCGCTGACATTGCGTTTCTGGCCATACTCC
GAGCGTCGCTCCCTTGTGTTAGCCAGGGTGCTAAGCGGCTGGTCGGCGCT
CTTCTTGGCCACGTTCTTGCTGTTGCTGCTGCTGCTGTTGCTGCCGTTGG
TGCCATTTTCAGTGCCCTTGCTCTGGACGCCCGGGGAGGACGCTGCGCTG
CCTCGTTTCAAATGAGCCGGCATTCGTTTGGGTGGCTGCATTGAGCTGGA
CCCCGAACCACTTCCAGAGGTGGATGCGGATGAGGTAGATGCTTGGTCTG
CGGGCGGTGCTGGCTTTTGGGGTGACTTGAGTGTCTTGGGGTCTTCCTGC
TTCTTGTGCATGCCCACATCCAACCAATACTTCAGTTGCTCCTCGCGCTG
CCGCTGCATCAGCTCCTGGCCGGCGGCGTACTTGCTGAGCAGACCCTGAA
GCTTCTGTACGGTCTTGTAGACCGTCTCGGCCGCAATCAGTCCGTAGTCG
AAGAGCGAACACATATGCAGGATGAAGTTGCGATAGAGATTCTTGCGCAC
AATCTCAGTGCCTTTGGCGTCGAGGAACATTTCGCANGCGATCGGCAGCT
GGCAATCGCCCACAAAGCCGTGACGCATCACGTGCAGGTTCCACAGCTTC
ATCAACTCCTTTTCACCCTCGTTCACGTCGGAAAACTCGTCGATCATCTG
GATGGTCTTCTGGCGCAGCCACAGCGGATCGCTCTCGCCCTCG
BO11056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8013-PA | 2568 | Su(z)12-RA | 1641..2565 | 943..19 | 4606 | 99.8 | Minus |
| CG8013-PB | 2703 | Su(z)12-RB | 1641..2415 | 943..169 | 3856 | 99.8 | Minus |
| CG12720-PA | 945 | CG12720-RA | 510..537 | 344..317 | 140 | 100 | Minus |
| CG12206-PA | 1749 | CG12206-RA | 385..412 | 344..317 | 140 | 100 | Minus |
| CG12206-PB | 1749 | CG12206-RB | 385..412 | 344..317 | 140 | 100 | Minus |
| CG12206-PC | 1749 | CG12206-RC | 385..412 | 344..317 | 140 | 100 | Minus |
| CG7391-PF | 2886 | Clk-RF | 2235..2262 | 344..317 | 140 | 100 | Minus |
| CG7391-PB | 3072 | Clk-RB | 2421..2448 | 344..317 | 140 | 100 | Minus |
| CG7391-PA | 3072 | Clk-RA | 2421..2448 | 344..317 | 140 | 100 | Minus |
| CG5799-PA | 3075 | dve-RA | 333..360 | 344..317 | 140 | 100 | Minus |
| CG7391-PC | 3084 | Clk-RC | 2433..2460 | 344..317 | 140 | 100 | Minus |
| CG7391-PD | 3084 | Clk-RD | 2433..2460 | 344..317 | 140 | 100 | Minus |
| CG8787-PB | 4683 | Asx-RB | 3061..3088 | 343..316 | 140 | 100 | Minus |
| CG8787-PA | 5010 | Asx-RA | 3061..3088 | 343..316 | 140 | 100 | Minus |
| CG6713-PD | 642 | Nos-RD | 73..99 | 343..317 | 135 | 100 | Minus |
| CG10325-PA | 993 | abd-A-RA | 723..749 | 344..318 | 135 | 100 | Minus |
| CG11966-PA | 1764 | CG11966-RA | 1447..1473 | 343..317 | 135 | 100 | Minus |
| CG10325-PB | 1773 | abd-A-RB | 1503..1529 | 344..318 | 135 | 100 | Minus |
| CG6713-PH | 2115 | Nos-RH | 73..99 | 343..317 | 135 | 100 | Minus |
| CG6713-PI | 2241 | Nos-RI | 73..99 | 343..317 | 135 | 100 | Minus |
| CG6713-PJ | 2271 | Nos-RJ | 73..99 | 343..317 | 135 | 100 | Minus |
| CG6713-PB | 2271 | Nos-RB | 73..99 | 343..317 | 135 | 100 | Minus |
| CG6713-PF | 2271 | Nos-RF | 73..99 | 343..317 | 135 | 100 | Minus |
| CG6713-PG | 2448 | Nos-RG | 73..99 | 343..317 | 135 | 100 | Minus |
| CG4136-PA | 2514 | CG4136-RA | 1794..1820 | 344..318 | 135 | 100 | Minus |
| CG1066-PA | 2958 | Shab-RA | 180..206 | 344..318 | 135 | 100 | Minus |
| CG1066-PC | 3036 | Shab-RC | 180..206 | 344..318 | 135 | 100 | Minus |
| CG1066-PB | 3048 | Shab-RB | 180..206 | 344..318 | 135 | 100 | Minus |
| CG7958-PA | 3408 | tna-RA | 282..308 | 344..318 | 135 | 100 | Minus |
| CG7958-PB | 3450 | tna-RB | 324..350 | 344..318 | 135 | 100 | Minus |
| CG6713-PE | 3735 | Nos-RE | 73..99 | 343..317 | 135 | 100 | Minus |
| CG6713-PC | 4050 | Nos-RC | 73..99 | 343..317 | 135 | 100 | Minus |
| CG6713-PA | 4050 | Nos-RA | 73..99 | 343..317 | 135 | 100 | Minus |
| CG5732-PA | 4095 | CG5732-RA | 1822..1848 | 344..318 | 135 | 100 | Minus |
| CG5067-PA | 4212 | cic-RA | 1395..1421 | 344..318 | 135 | 100 | Minus |
| CG7951-PA | 4524 | sima-RA | 3087..3113 | 344..318 | 135 | 100 | Minus |
| CG3936-PA | 8112 | N-RA | 7671..7697 | 344..318 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(z)12-RA | 4098 | CG8013-RA | 2115..3039 | 943..19 | 4614 | 99.9 | Minus |
| Su(z)12-RB | 3936 | CG8013-RB | 2115..2889 | 943..169 | 3864 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19920154..19920926 | 171..943 | 3854 | 99.9 | Plus |
| 3L | 28110227 | 3L | 19919369..19919522 | 19..172 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:38:31 has no hits.
BO11056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:56 Download gff for
BO11056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8013-PA | 1641..2568 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:16:59 Download gff for
BO11056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8013-PA | 1641..2568 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:28:51 Download gff for
BO11056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 2115..3042 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:04 Download gff for
BO11056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 2115..3042 | 15..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:04 Download gff for
BO11056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19919365..19919520 | 15..170 | 98 | <- | Plus |
| 3L | 19920154..19920926 | 171..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:28:51 Download gff for
BO11056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19912465..19912620 | 15..170 | 98 | <- | Plus |
| arm_3L | 19913254..19914026 | 171..943 | 99 | | Plus |
BO11056.5prime Sequence
894 bp (842 high quality bases) assembled on 2006-04-19
> BO11056.5prime
GAAGTTATCAGTCGACATGGCCCCAGCGAAAAAACGCGAAAAAGACAGTA
ATCCGGATGGTTCTGCCGCAAATGGCATTATTGGCCTCACCCATGGAGCA
CCGGACGCGAGCAATGCTGGCTCTACTGTACCGCCGACGGCCGAGGGTCA
GGTCAAACTCAATGGCCACCAGCAGGAGCAGGAACTCTTTTTGCAGGCCT
TTGAGAAGCCCACGCAGATCTATCGCTACCTGCGCAATCGACACGAGACA
AACCCCATCTTCCTCAACCGCACGCTCAGCTACATGAAGGAACGGATGTC
GCGGAACAACAAGAAGCGGATCAGCTTCCAGGTAAACTCCATGCTGGAGA
GCATAACACAAAAGTCGGAGGCGGTGAGCCAGAACTACCTGCACGTCATC
TACGATTCGCTGCACGAGAAGTTGCCGGCGAGGTTGGACAACGAGTCTGG
CGAGGATTTGCTGCAGGAGCAGCTGCTCTGCGAAGCGGGCGAGTCTGTGA
GTGTGGAGACAACGCTGTACAAGATCACACGCAGCAAGCGAAAGGACAGC
ACGCTGGACTTTCAGGAGCTGCTCAGCAAGTGCTCGCAGATCGTGTACAA
CCCAAAGGATCGTGTGGGAGAACATGCCACCATCAGCATTCCTCTCCAGA
CGATGCGCCCAATGGGTGAGCAGCACACACTGTACAAGCTGCTATTTCGC
ATCAAGGTGCTGTCGCCAAGTACGTGCAATGATGAGAATGCAGAAACTCC
ACCGAACAAGCGGTCGCGTCCAAATGAGAAAATGTTCGGATCGGAACTGA
TATTGTACGAGAAGTCCAGCGGATTCATAACCGAAGGCGAGTACGAGGCC
ATGCTGCAGCCTCTTAATTCCACCAGCATCAAGTCCTTCTCACC
BO11056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8013-PA | 2568 | Su(z)12-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
| CG8013-PB | 2703 | Su(z)12-RB | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(z)12-RB | 3936 | CG8013-RB | 475..1352 | 17..894 | 4390 | 100 | Plus |
| Su(z)12-RA | 4098 | CG8013-RA | 475..1352 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19921967..19922456 | 743..254 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 19922799..19922988 | 206..17 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 19921754..19921909 | 894..739 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 19922685..19922731 | 253..207 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:38:27 has no hits.
BO11056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:56:57 Download gff for
BO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8013-PB | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:00 Download gff for
BO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8013-PB | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:05 Download gff for
BO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 475..1352 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:23:41 Download gff for
BO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 475..1352 | 17..894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:23:41 Download gff for
BO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19921754..19921904 | 744..894 | 100 | <- | Minus |
| 3L | 19921967..19922456 | 254..743 | 100 | <- | Minus |
| 3L | 19922685..19922731 | 207..253 | 100 | <- | Minus |
| 3L | 19922799..19922988 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:05 Download gff for
BO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19915899..19916088 | 17..206 | 100 | | Minus |
| arm_3L | 19914854..19915004 | 744..894 | 100 | <- | Minus |
| arm_3L | 19915067..19915556 | 254..743 | 100 | <- | Minus |
| arm_3L | 19915785..19915831 | 207..253 | 100 | <- | Minus |
BO11056.complete Sequence
2599 bp (2599 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631976
> BO11056.complete
GAAGTTATCAGTCGACATGGCCCCAGCGAAAAAACGCGAAAAAGACAGTA
ATCCGGATGGTTCTGCCGCAAATGGCATTATTGGCCTCACCCATGGAGCA
CCGGACGCGAGCAATGCTGGCTCTACTGTACCGCCGACGGCCGAGGGTCA
GGTCAAACTCAATGGCCACCAGCAGGAGCAGGAACTCTTTTTGCAGGCCT
TTGAGAAGCCCACGCAGATCTATCGCTACCTGCGCAATCGACACGAGACA
AACCCCATCTTCCTCAACCGCACGCTCAGCTACATGAAGGAACGGATGTC
GCGGAACAACAAGAAGCGGATCAGCTTCCAGGTAAACTCCATGCTGGAGA
GCATAACACAAAAGTCGGAGGCGGTGAGCCAGAACTACCTGCACGTCATC
TACGATTCGCTGCACGAGAAGTTGCCGGCGAGGTTGGACAACGAGTCTGG
CGAGGATTTGCTGCAGGAGCAGCTGCTCTGCGAAGCGGGCGAGTCTGTGA
GTGTGGAGACAACGCTGTACAAGATCACACGCAGCAAGCGAAAGGACAGC
ACGCTGGACTTTCAGGAGCTGCTCAGCAAGTGCTCGCAGATCGTGTACAA
CCCAAAGGATCGTGTGGGAGAACATGCCACCATCAGCATTCCTCTCCAGA
CGATGCGCCCAATGGGTGAGCAGCACACACTGTACAAGCTGCTATTTCGC
ATCAAGGTGCTGTCGCCAAGTACGTGCAATGATGAGAATGCAGAAACTCC
ACCGAACAAGCGGTCGCGTCCAAATGAGAAAATGTTCGGATCGGAACTGA
TATTGTACGAGAAGTCCAGCGGATTCATAACCGAAGGCGAGTACGAGGCC
ATGCTGCAGCCTCTTAATTCCACCAGCATCAAGTCCTTCTCACCAAAGAA
ATGCACATGGGAAACGATGCCGGATAGCTACATTCCACTCTCGTTGACCT
ACGACGTCTACCAGCAGAGTCCCATGCTCAAGTTCCATCTGACGCTATCC
AATGAGCAGCTGCCCGAGATGATTTCCGCTCCGGAGCTGCAGCGTTATGT
CCAGCATCTGGATGCGGTGGCCGAGATGAACTACAACAACAATAACTACA
ATAATAACAACAACTGCAGCGGATTAAAGAATGGTAGTGGCGGAGGCAAC
AGCACGGTGTGCAAGACCACACCGGAGCACATTCAGATCGTGTACAACTT
CATGTACAGCAATAATACCCGTCAGCAGACGGAGTACACCCAGGAGCTGA
ACTGCCCGTGGTGTGGCCTGGACTGCCTGCGTCTCTACGCCCTGCTGAAG
CATCTAAAGCTTTGCCACGCCCGCTTCAACTTCACCTACCAGCCGGCTGG
AAGTGGAGCTCGCATAGATGTTACCATCAATGATGCGTACGACGGCTCGT
ATGCCGGATCGCCCTACGACTTGGCCGGTCCATCTGGCTCCTCGTTTGCC
CGCACCTGCGGCCCCGTGCGACGCACCTCGGTCACCAGTCTGATGGTGTG
CCGGCCCAGGCGGCAGAAGACCTGCCTGGACGAATTCCTGGAGCTGGACG
AGGACGAGATTAGCAACCAGCGGTCGTACATTACCGGTCACAACAGACTC
TACCATCACACGGAGACTTGCCTACCCGTGCATCCCAAAGAGCTGGACAT
CGACTCCGAGGGCGAGAGCGATCCGCTGTGGCTGCGCCAGAAGACCATCC
AGATGATCGACGAGTTTTCCGACGTGAACGAGGGTGAAAAGGAGTTGATG
AAGCTGTGGAACCTGCACGTGATGCGTCACGGCTTTGTGGGCGATTGCCA
GCTGCCGATCGCCTGCGAAATGTTCCTCGACGCCAAAGGCACTGAGATTG
TGCGCAAGAATCTCTATCGCAACTTCATCCTGCATATGTGTTCGCTCTTC
GACTACGGACTGATTGCGGCCGAGACGGTCTACAAGACCGTACAGAAGCT
TCAGGGTCTGCTCAGCAAGTACGCCGCCGGCCAGGAGCTGATGCAGCGGC
AGCGCGAGGAGCAACTGAAGTATTGGTTGGATGTGGGCATGCACAAGAAG
CAGGAAGACCCCAAGACACTCAAGTCACCCCAAAAGCCAGCACCGCCCGC
AGACCAAGCATCTACCTCATCCGCATCCACCTCTGGAAGTGGTTCGGGGT
CCAGCTCAATGCAGCCACCCAAACGAATGCCGGCTCATTTGAAACGAGGC
AGCGCAGCGTCCTCCCCGGGCGTCCAGAGCAAGGGCACTGAAAATGGCAC
CAACGGCAGCAACAGCAGCAGCAGCAACAGCAAGAACGTGGCCAAGAAGA
GCGCCGACCAGCCGCTTAGCACCCTGGCTAACACAAGGGAGCGACGCTCG
GAGTATGGCCAGAAACGCAATGTCAGCGGATCGCGACTGGCGGCCACACC
AGCATCGAAGCGCAAGCTGAGCTCCAAAGATGTGGAGCAGGCGGCGGATG
CGCCAGAAGTGCTGACCCACAGCGATAATGCTGTCGATGTTGGTATTATT
GATGATGAGTGTGGCGGATTTGGTGCCGTGGGAGTTATGAATGGAGTTGC
GAGCCCAGTTGCCAACAACTGTGTGGGCAACGCAAGCTTTCTAGACCAT
BO11056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(z)12-RA | 2568 | CG8013-PA | 1..2565 | 17..2581 | 12810 | 100 | Plus |
| Su(z)12-RB | 2703 | CG8013-PB | 1..2415 | 17..2431 | 12060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(z)12-RA | 4098 | CG8013-RA | 475..3039 | 17..2581 | 12810 | 100 | Plus |
| Su(z)12-RB | 3936 | CG8013-RB | 475..2889 | 17..2431 | 12060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19921052..19921909 | 1596..739 | 4275 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19920154..19920989 | 2429..1594 | 4180 | 100 | Minus |
| 3L | 28110227 | 3L | 19921967..19922456 | 743..254 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 19922799..19922988 | 206..17 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 19919369..19919522 | 2581..2428 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 19922685..19922731 | 253..207 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2797..2942 | 1079..1224 | 135 | 59.3 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 551..594 | 1079..1122 | 130 | 77.3 | Plus |
BO11056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:39 Download gff for
BO11056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 1..2568 | 17..2585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:28 Download gff for
BO11056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 413..2980 | 17..2585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:31 Download gff for
BO11056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 475..3039 | 17..2583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:39 Download gff for
BO11056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 413..2980 | 17..2585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:50 Download gff for
BO11056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 475..3039 | 17..2583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:50 Download gff for
BO11056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19919367..19919520 | 2430..2583 | 98 | <- | Minus |
| 3L | 19920154..19920986 | 1597..2429 | 100 | <- | Minus |
| 3L | 19921052..19921904 | 744..1596 | 99 | <- | Minus |
| 3L | 19921967..19922456 | 254..743 | 100 | <- | Minus |
| 3L | 19922685..19922731 | 207..253 | 100 | <- | Minus |
| 3L | 19922799..19922988 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:31 Download gff for
BO11056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19912467..19912620 | 2430..2583 | 98 | <- | Minus |
| arm_3L | 19913254..19914086 | 1597..2429 | 100 | <- | Minus |
| arm_3L | 19914152..19915004 | 744..1596 | 99 | <- | Minus |
| arm_3L | 19915067..19915556 | 254..743 | 100 | <- | Minus |
| arm_3L | 19915785..19915831 | 207..253 | 100 | <- | Minus |
| arm_3L | 19915899..19916088 | 17..206 | 100 | | Minus |
BO11056.pep Sequence
Translation from 16 to 2599
> BO11056.pep
MAPAKKREKDSNPDGSAANGIIGLTHGAPDASNAGSTVPPTAEGQVKLNG
HQQEQELFLQAFEKPTQIYRYLRNRHETNPIFLNRTLSYMKERMSRNNKK
RISFQVNSMLESITQKSEAVSQNYLHVIYDSLHEKLPARLDNESGEDLLQ
EQLLCEAGESVSVETTLYKITRSKRKDSTLDFQELLSKCSQIVYNPKDRV
GEHATISIPLQTMRPMGEQHTLYKLLFRIKVLSPSTCNDENAETPPNKRS
RPNEKMFGSELILYEKSSGFITEGEYEAMLQPLNSTSIKSFSPKKCTWET
MPDSYIPLSLTYDVYQQSPMLKFHLTLSNEQLPEMISAPELQRYVQHLDA
VAEMNYNNNNYNNNNNCSGLKNGSGGGNSTVCKTTPEHIQIVYNFMYSNN
TRQQTEYTQELNCPWCGLDCLRLYALLKHLKLCHARFNFTYQPAGSGARI
DVTINDAYDGSYAGSPYDLAGPSGSSFARTCGPVRRTSVTSLMVCRPRRQ
KTCLDEFLELDEDEISNQRSYITGHNRLYHHTETCLPVHPKELDIDSEGE
SDPLWLRQKTIQMIDEFSDVNEGEKELMKLWNLHVMRHGFVGDCQLPIAC
EMFLDAKGTEIVRKNLYRNFILHMCSLFDYGLIAAETVYKTVQKLQGLLS
KYAAGQELMQRQREEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQAST
SSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNS
SSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRK
LSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVAN
NCVGNASFLDH
BO11056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(z)12-PA | 855 | CG8013-PA | 1..855 | 1..855 | 4486 | 100 | Plus |
| Su(z)12-PB | 900 | CG8013-PB | 1..834 | 1..837 | 4228 | 97 | Plus |
