Clone Sequence Records
BO11058.3prime Sequence
854 bp (800 high quality bases) assembled on 2006-04-19
> BO11058.3prime
ATGGTCTAGAAAGCTTGCTTCGACGGTGACAATGCGGATGGTGTTGGTGA
AGCCGGAGCCCTGCTTCCAGCCGGTAACCACCACGACGGAATCGCCGGTC
TTGATGAAGCCGTTCTTCTTTCCGACCTGCAGACCGAACTGCACGCGCAC
GTCCACGTCCTTCAGCCAGTCACCAAGACCGGGCTCCTTGTAGATGAGTG
GCACCAGTCCACGGTAGAGATGGGCCTGTCGGGCGGTCTGCGCGAAACGG
GTGACCGCGATGATGGGGCAGCGTGGGCGGTACTTGCTCACCTGGAAGGC
CGACTTGCCGCTGGTGGTGATCACCACGATGGCGGAGGCCTTGGCCTTGG
TGGCAGCCTCAACGGCAGCGATGGCAGCCGCGTGAGAGGCATCGATGGTA
CCAGCGCCGCGAACCAAGTCGTTAAAGAGGTTCTGGTGCCAGAGGGCAGC
CTCGGCCTCCTTGCAGGTCTTGGCCATGGTCAGGACGCACTCCAGCGGGT
ACTCGCCCTTGGCGGTCTCACCAGACAACATGACGCAATCAGCACCATCG
AGCACAGCGTTGGCCACATCAGAGATCTCAGCGCGAGTGGGACGTGGCTT
CTTCACCATTGACTCCAACATCTGAGTGGCGCAGATCACAGGCTTGCCAG
CCTTGTTGCAGCGGGCAATCATGGCCTTCTGGGCGAGGAACACCTTCTCG
GCGGGAATCTCAATACCCAGATCTCCACGGGCCACCATAATGCCATCACC
GGCCTCGATGATCTCGTCCAGGTTGTGCATGCCCTGCTGGTTCTCGATCT
TGGAAATGATCTTGATGTTCTTGCCCTTCTCGCCAAGAACCTTACGGATC
TCGG
BO11058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7070-PB | 1539 | PyK-RB | 701..1536 | 854..19 | 4180 | 100 | Minus |
| CG7070-PA | 1602 | PyK-RA | 764..1599 | 854..19 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PyK-RA | 2109 | CG7070-RA | 1006..1841 | 854..19 | 4180 | 100 | Minus |
| PyK-RB | 1958 | CG7070-RB | 855..1690 | 854..19 | 4180 | 100 | Minus |
| CG7069-RA | 2693 | CG7069-RA | 1011..1294 | 747..464 | 490 | 78.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22371499..22372167 | 854..186 | 3345 | 100 | Minus |
| 3R | 32079331 | 3R | 22372225..22372382 | 186..29 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 22373897..22374180 | 747..464 | 475 | 77.8 | Minus |
| 3R | 32079331 | 3R | 14753414..14753603 | 471..660 | 290 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:43:00 has no hits.
BO11058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:00 Download gff for
BO11058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-PA | 764..1602 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:03 Download gff for
BO11058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7070-PA | 764..1602 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:49:17 Download gff for
BO11058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RB | 855..1696 | 11..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:22:47 Download gff for
BO11058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RB | 855..1696 | 11..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:22:47 Download gff for
BO11058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22371499..22372167 | 186..854 | 100 | -> | Minus |
| 3R | 22372226..22372384 | 23..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:49:17 Download gff for
BO11058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18197221..18197889 | 186..854 | 100 | -> | Minus |
| arm_3R | 18197948..18198106 | 23..185 | 97 | | Minus |
BO11058.5prime Sequence
922 bp (726 high quality bases) assembled on 2006-04-19
> BO11058.5prime
GAAGTTATCAGTCGACATGGCCGCAGGAGCTGATACCCAACTGGAGCACA
TGTGCCGTCTGCAGTTCGACTCGCCAGTGCCCCATGTGCGTCTGTCCGGA
ATCGTGTGCACCATCGGACCTGCCTCCAGCAGCGTGGAGATGCTGGAGAA
GATGATGGCCACCGGCATGAACATCGCGCGCATGAACTTCTCTCACGGAT
CGCACGAGTACCATGCCGCCACCGTGGCCAATGTGCGCCAGGCGGTGAAG
AACTACTCGGCCAAGCTGGGCTACGAACACCCCGTGGCCATTGCCCTGGA
CACCAAGGGGCCCGAGATCCGTACCGGTCTGATCGGAGGCAGCGGCACCG
CCGAGATTGAGCTGAAGAAGGGCGAGAAGATCAAGCTGACCACCAACAAG
GAATTCCTGGAGAAGGGCTCTCTGGAGATTGTGTACGTGGACTACGAGAA
CATTGTCAATGTGGTGAAGCCCGGCAACCGGGTGTTCGTCGATGACGGTC
TGATCTCACTGATTGTCCGCGAGGTAGGCAAGGATTCCCTCACCTGCGAG
GTGGAGAACGGCGGCTCTCTGGGTTCCCGCAAGGGTGTGAACCTGCCAGG
CGTGCCCGTCGATCTGCCTGCCGTCTCCGAGAAGGATAAGAGCGATCTGC
TGTTCGGTGTGGAGCAGGAAGTGGACATGATCTTTGCTTCGTTCATCCGC
AACGCCGCTGCTTTGACCGAGATCCGTAAGGTTCTTGGCGAGAAGGGCAA
GAACATCAAGATCATTTCCAAGATCGAGAACCAGCAGGGCATGCACAACC
TGGACGAGATCATCGAGGCCGGTGATGGCATTATGGTGGCCCGTGGAGAT
CTGGGTATTGAGATTCCCGCCGAGAAGGTGTTCCTCGCCCAGAAAGGCAT
GATTGCCCGCTGCAACAAGGCT
BO11058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7070-PA | 1602 | PyK-RA | 62..969 | 15..922 | 4490 | 99.7 | Plus |
| CG7070-PB | 1539 | PyK-RB | 1..906 | 17..922 | 4480 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PyK-RA | 2109 | CG7070-RA | 304..1211 | 15..922 | 4510 | 99.8 | Plus |
| PyK-RB | 1958 | CG7070-RB | 153..1060 | 15..922 | 4510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22370797..22371704 | 15..922 | 4510 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:21:14 has no hits.
BO11058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:01 Download gff for
BO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-PA | 58..969 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:05 Download gff for
BO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7070-PA | 58..969 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:29:45 Download gff for
BO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RB | 149..1060 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:33:14 Download gff for
BO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RB | 149..1060 | 9..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:33:14 Download gff for
BO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22370793..22371704 | 9..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:29:45 Download gff for
BO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18196515..18197426 | 9..922 | 99 | | Plus |
BO11058.complete Sequence
1570 bp (1570 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631977
> BO11058.complete
GAAGTTATCAGTCGACATGGCCGCAGGAGCTGATACCCAACTGGAGCACA
TGTGCCGTCTGCAGTTCGACTCGCCAGTGCCCCATGTGCGTCTGTCCGGA
ATCGTGTGCACCATCGGACCTGCCTCCAGCAGCGTGGAGATGCTGGAGAA
GATGATGGCCACCGGCATGAACATCGCGCGCATGAACTTCTCTCACGGAT
CGCACGAGTACCATGCCGCCACCGTGGCCAATGTGCGCCAGGCGGTGAAG
AACTACTCGGCCAAGCTGGGCTACGAACACCCCGTGGCCATTGCCCTGGA
CACCAAGGGGCCCGAGATCCGTACCGGTCTGATCGGAGGCAGCGGCACCG
CCGAGATTGAGCTGAAGAAGGGCGAGAAGATCAAGCTGACCACCAACAAG
GAATTCCTGGAGAAGGGCTCTCTGGAGATTGTGTACGTGGACTACGAGAA
CATTGTCAATGTGGTGAAGCCCGGCAACCGGGTGTTCGTCGATGACGGTC
TGATCTCACTGATTGTCCGCGAGGTAGGCAAGGATTCCCTCACCTGCGAG
GTGGAGAACGGCGGCTCTCTGGGTTCCCGCAAGGGTGTGAACCTGCCAGG
CGTGCCCGTCGATCTGCCTGCCGTCTCCGAGAAGGATAAGAGCGATCTGC
TGTTCGGTGTGGAGCAGGAAGTGGACATGATCTTTGCTTCGTTCATCCGC
AACGCCGCTGCTTTGACCGAGATCCGTAAGGTTCTTGGCGAGAAGGGCAA
GAACATCAAGATCATTTCCAAGATCGAGAACCAGCAGGGCATGCACAACC
TGGACGAGATCATCGAGGCCGGTGATGGCATTATGGTGGCCCGTGGAGAT
CTGGGTATTGAGATTCCCGCCGAGAAGGTGTTCCTCGCCCAGAAGGCCAT
GATTGCCCGCTGCAACAAGGCTGGCAAGCCTGTGATCTGCGCCACTCAGA
TGTTGGAGTCAATGGTGAAGAAGCCACGTCCCACTCGCGCTGAGATCTCT
GATGTGGCCAACGCTGTGCTCGATGGTGCTGATTGCGTCATGTTGTCTGG
TGAGACCGCCAAGGGCGAGTACCCGCTGGAGTGCGTCCTGACCATGGCCA
AGACCTGCAAGGAGGCCGAGGCTGCCCTCTGGCACCAGAACCTCTTTAAC
GACTTGGTTCGCGGCGCTGGTACCATCGATGCCTCTCACGCGGCTGCCAT
CGCTGCCGTTGAGGCTGCCACCAAGGCCAAGGCCTCCGCCATCGTGGTGA
TCACCACCAGCGGCAAGTCGGCCTTCCAGGTGAGCAAGTACCGCCCACGC
TGCCCCATCATCGCGGTCACCCGTTTCGCGCAGACCGCCCGACAGGCCCA
TCTCTACCGTGGACTGGTGCCACTCATCTACAAGGAGCCCGGTCTTGGTG
ACTGGCTGAAGGACGTGGACGTGCGCGTGCAGTTCGGTCTGCAGGTCGGA
AAGAAGAACGGCTTCATCAAGACCGGCGATTCCGTCGTGGTGGTTACCGG
CTGGAAGCAGGGCTCCGGCTTCACCAACACCATCCGCATTGTCACCGTCG
AAGCAAGCTTTCTAGACCAT
BO11058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PyK-RA | 1602 | CG7070-PA | 62..1599 | 15..1552 | 7690 | 100 | Plus |
| PyK-RB | 1539 | CG7070-PB | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| CG7069-RA | 2235 | CG7069-PA | 386..944 | 549..1107 | 530 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PyK-RA | 2109 | CG7070-RA | 304..1841 | 15..1552 | 7690 | 100 | Plus |
| PyK-RB | 1958 | CG7070-RB | 153..1690 | 15..1552 | 7690 | 100 | Plus |
| CG7069-RA | 2693 | CG7069-RA | 736..1294 | 549..1107 | 530 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22370797..22372167 | 15..1385 | 6855 | 100 | Plus |
| 3R | 32079331 | 3R | 22372225..22372382 | 1385..1542 | 790 | 100 | Plus |
| 3R | 32079331 | 3R | 22373622..22374180 | 549..1107 | 530 | 73 | Plus |
| 3R | 32079331 | 3R | 14753414..14753603 | 1100..911 | 290 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:07:20 has no hits.
BO11058.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:37 Download gff for
BO11058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RA | 58..1602 | 9..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:30 Download gff for
BO11058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RA | 374..1921 | 9..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:24 Download gff for
BO11058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RB | 155..1690 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:37 Download gff for
BO11058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RA | 374..1921 | 9..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:24 Download gff for
BO11058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RB | 155..1690 | 17..1554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:24 Download gff for
BO11058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22370799..22372167 | 17..1385 | 100 | -> | Plus |
| 3R | 22372226..22372384 | 1386..1548 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:24 Download gff for
BO11058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18196521..18197889 | 17..1385 | 100 | -> | Plus |
| arm_3R | 18197948..18198106 | 1386..1548 | 97 | | Plus |
BO11058.pep Sequence
Translation from 16 to 1570
> BO11058.pep
MAAGADTQLEHMCRLQFDSPVPHVRLSGIVCTIGPASSSVEMLEKMMATG
MNIARMNFSHGSHEYHAATVANVRQAVKNYSAKLGYEHPVAIALDTKGPE
IRTGLIGGSGTAEIELKKGEKIKLTTNKEFLEKGSLEIVYVDYENIVNVV
KPGNRVFVDDGLISLIVREVGKDSLTCEVENGGSLGSRKGVNLPGVPVDL
PAVSEKDKSDLLFGVEQEVDMIFASFIRNAAALTEIRKVLGEKGKNIKII
SKIENQQGMHNLDEIIEAGDGIMVARGDLGIEIPAEKVFLAQKAMIARCN
KAGKPVICATQMLESMVKKPRPTRAEISDVANAVLDGADCVMLSGETAKG
EYPLECVLTMAKTCKEAEAALWHQNLFNDLVRGAGTIDASHAAAIAAVEA
ATKAKASAIVVITTSGKSAFQVSKYRPRCPIIAVTRFAQTARQAHLYRGL
VPLIYKEPGLGDWLKDVDVRVQFGLQVGKKNGFIKTGDSVVVVTGWKQGS
GFTNTIRIVTVEASFLDH
BO11058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PyK-PA | 533 | CG7070-PA | 22..533 | 1..512 | 2595 | 100 | Plus |
| PyK-PB | 512 | CG7070-PB | 1..512 | 1..512 | 2595 | 100 | Plus |
| CG2964-PA | 554 | CG2964-PA | 14..513 | 7..509 | 1268 | 47.8 | Plus |
| CG7069-PA | 744 | CG7069-PA | 1..461 | 51..511 | 1257 | 56.4 | Plus |
| CG7362-PB | 793 | CG7362-PB | 109..413 | 191..493 | 704 | 49.8 | Plus |
