Clone BO11059 Report

Search the DGRC for BO11059

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG6860-RA
Protein status:BO11059.pep: validated full length
Sequenced Size:2461

Clone Sequence Records

BO11059.3prime Sequence

889 bp (846 high quality bases) assembled on 2006-04-19

> BO11059.3prime
ATGGTCTAGAAAGCTTGCGGCCAATGGCGTTGGCGACATTGTGGCACGTG
TCGTTCTGGTAGGCGACTTGGTGGGCGTGGCTGCTCCACTGCTGTTGCCA
CTGCCGCAGCCACCATTTCCATGAAGCCGGAAAAGCTCACCCACCGTAAT
GGCCACTTGGACGGCACCTTTACCCTCCAGCACGTCGGCAGCGCAGCAAA
TTAGATTCTCATCTACGCCAATGCGTCGACACGCCTCCAGAAAGTTATCC
ACATTCCGCCGGCACCTGGCCATTGTCAACTTATTGACACCGGGAGATGG
CACATGAATGCTGGCCACTGATCGCGGACGCACATAGTTGGCCAAATGAC
ACAGTATAACCCCATCCGTCAGAGCAGAGGCAATATCCACAGGCAACGTC
ATCTTGAGACGCGTCTCAATGATAGTTCTCAGCTGTGACATCAACTCAGT
CTCCTCCCTTTGGCGATCAAACTCCCGGCGCATGGTGAAGCTCAGCTTCT
CCGCGGGGATGTCATGGTTCCAGGTCACCGAACGATGCGTCTTTACTGTG
CCAAGTTTGGTGGTTGAGCTGACTGGGGATTTAATGGTGGTGCTACTGAC
TATTCCCACTGTTGTTTGGACTCCTCCACCATTGGACGTATTAAATTTGC
TTGTGCCATTCTTCATGGGACTCTGTGGCTTAACGTAGCCCAAACAATCC
GATGAATTTGCGGAGCGAATGTCGGATGTGGATGCTGGCTTTATTTCTGT
AATCCGAGAGGGAATCACCTTCTGGATGGGTTTCTTTGGTATAACAACAT
CATCGACTCCATTTCCGTTCGCGCTTCCATTTCCATTCCCATTGTGACCA
ATTTGGTTGCTATTCTGTTTCATAATAGACTTTGGCAGT

BO11059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6860-PA 2430 CG6860-RA 1557..2427 889..19 4355 100 Minus
CG6860-PB 3408 CG6860-RB 1557..2238 889..208 3410 100 Minus
CG6860-PB 3408 CG6860-RB 3216..3405 208..19 950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-RA 3449 CG6860-RA 1890..2760 889..19 4355 100 Minus
Lrch-RC 5650 CG6860-RC 1890..2584 889..195 3415 99.4 Minus
Lrch-RB 4427 CG6860-RB 1890..2584 889..195 3415 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17372905..17373370 424..889 2330 100 Plus
2L 23513712 2L 17368200..17368390 19..209 955 100 Plus
2L 23513712 2L 17372708..17372845 286..423 690 100 Plus
2L 23513712 2L 17372565..17372642 208..285 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:00:11 has no hits.

BO11059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:02 Download gff for BO11059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6860-PA 1557..2430 15..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:06 Download gff for BO11059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6860-PA 1557..2430 15..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:15 Download gff for BO11059.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 1890..2763 15..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:22 Download gff for BO11059.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 1890..2763 15..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:22 Download gff for BO11059.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17368196..17368388 15..207 98 <- Plus
2L 17372565..17372642 208..285 100 <- Plus
2L 17372708..17372845 286..423 100 <- Plus
2L 17372905..17373370 424..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:15 Download gff for BO11059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17368196..17368388 15..207 98 <- Plus
arm_2L 17372565..17372642 208..285 100 <- Plus
arm_2L 17372708..17372845 286..423 100 <- Plus
arm_2L 17372905..17373370 424..889 100   Plus

BO11059.5prime Sequence

858 bp (855 high quality bases) assembled on 2006-04-19

> BO11059.5prime
GAAGTTATCAGTCGACATGGCAGCAACGGTTTACCAACGCCTACATAGCG
TCGCAGTCGGCGTCGGCAGCGCCGCTGGCAGCGCCATCGGCAGCGGGTCG
GCTTCCCTTCCAGGATCTGGAACAGGATCGGGATCTGGAATAGGCCACGC
TGGAAACACCTCCTCCTCCACCTCGTCTGCCCTGCTTAGTCATTCCCAGC
TGACGCGCTCCCTGGAAAGAATCCTGGAAGAAGCGCACTTCAGCGGCGAA
CTGATCCTGACCAATCGCAAGCTGAAGGACTTTCCCAGGACTGGAACGAA
GTACTCACTTACCGACACTGTCATCGCAGATCTTTCCCGGAATAGATTTG
CCGAGCTGCCCGAGGAAGTGACTACGTTTGCCTTCCTAGAGACCCTGCTA
CTGTATCACAATACGATTCGCAGCATTCCGGAATCGGTGAAGCAGCTATC
ATCGTTGACCTATTTAGATTTGCGCAGCAATCAGTTGTCCTCGCTGCCAC
GCGAGATTTGTTTCCTGCCTCTTCAGGTTCTGCTGGTTTCCAACAATCGA
TTGACTTCGTTACCAGATGAACTGGGTCGATTGGATCAGACACTGACCGA
TCTGGATGCTTCGTATAATCAGTTGGCCAATCTACCCGCTCGTCTGGGTG
AGCTAAGATCCCTGCGCTCGCTCTCGTTGAGAAGCAATCACTTGCTGTAT
CTGCCCAGAGAGCTTACCTGTTTGAGTTTGATATCACTGGACGTGAGCAA
CAACAAGATCGCTAGCCTGCCTCTCGAGATTCGTCACATGAGCACTTTGG
TAGAGCTTCAGCTAGAGAACAATCCTCTGACCTCGCCTCCAGCAAGCCTA
TGCATGCG

BO11059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6860-PA 2430 CG6860-RA 1..842 17..858 4210 100 Plus
CG6860-PB 3408 CG6860-RB 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-RC 5650 CG6860-RC 334..1175 17..858 4210 100 Plus
Lrch-RB 4427 CG6860-RB 334..1175 17..858 4210 100 Plus
Lrch-RA 3449 CG6860-RA 334..1175 17..858 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17374231..17374751 847..327 2605 100 Minus
2L 23513712 2L 17383470..17383782 329..17 1565 100 Minus
Blast to na_te.dros performed 2015-02-12 06:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 144..198 101..47 131 70.9 Minus
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 7027..7081 101..47 131 70.9 Minus

BO11059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:03 Download gff for BO11059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6860-PA 1..842 17..858 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:08 Download gff for BO11059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6860-PB 1..842 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:00 Download gff for BO11059.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 331..1175 14..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:30 Download gff for BO11059.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 331..1175 14..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:30 Download gff for BO11059.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17383470..17383785 14..329 99   Minus
2L 17374228..17374748 330..850 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:00 Download gff for BO11059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17374228..17374748 330..850 99 <- Minus
arm_2L 17383470..17383785 14..329 99   Minus

BO11059.complete Sequence

2461 bp (2461 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631978

> BO11059.complete
GAAGTTATCAGTCGACATGGCAGCAACGGTTTACCAACGCCTACATAGCG
TCGCAGTCGGCGTCGGCAGCGCCGCTGGCAGCGCCATCGGCAGCGGGTCG
GCTTCCCTTCCAGGATCTGGAACAGGATCGGGATCTGGAATAGGCCACGC
TGGAAACACCTCCTCCTCCACCTCGTCTGCCCTGCTTAGTCATTCCCAGC
TGACGCGCTCCCTGGAAAGAATCCTGGAAGAAGCGCACTTCAGCGGCGAA
CTGATCCTGACCAATCGCAAGCTGAAGGACTTTCCCAGGACTGGAACGAA
GTACTCACTTACCGACACTGTCATCGCAGATCTTTCCCGGAATAGATTTG
CCGAGCTGCCCGAGGAAGTGACTACGTTTGCCTTCCTAGAGACCCTGCTA
CTGTATCACAATACGATTCGCAGCATTCCGGAATCGGTGAAGCAGCTATC
ATCGTTGACCTATTTAGATTTGCGCAGCAATCAGTTGTCCTCGCTGCCAC
GCGAGATTTGTTTCCTGCCTCTTCAGGTTCTGCTGGTTTCCAACAATCGA
TTGACTTCGTTACCAGATGAACTGGGTCGATTGGATCAGACACTGACCGA
TCTGGATGCTTCGTATAATCAGTTGGCCAATCTACCCGCTCGTCTGGGTG
AGCTAAGATCCCTGCGCTCGCTCTCGTTGAGAAGCAATCACTTGCTGTAT
CTGCCCAGAGAGCTTACCTGTTTGAGTTTGATATCACTGGACGTGAGCAA
CAACAAGATCGCTAGCCTGCCTCTCGAGATTCGTCACATGAGCACTTTGG
TAGAGCTTCAGCTAGAGAACAATCCTCTGACCTCGCCTCCAGCAAGCCTA
TGCATGCGCGGCCTGGTGCACGTGTTCAAGTTTTTGGAAACGCAGGCCAC
CAAGGACGAGAAGGGATCCCGGTCAGGTGGCAACTACGATGGGTACACCA
CATTGCGAAGAGCTCCTCGACATAATTCCAGCGGCAATGTTCTTGAAGCT
AGCACCACTGGCAGCACTAACAACCAGCGGAGGCATCAAGTCGACTCGGG
TTACAACACCAGCGATGGTTTGGACAAGCGCTGGTCGCACGATGCTCCTA
CTAAATCGAAAACGGATTCACCGCTGCATTGTGTTTCCAATTCGACAGCA
GCCACTTTGCCCAGGACGCTGCCAAGTGCGGTTCATTCGCAAGCGGATCT
AATGGACGCATCCCTTACCTCCAGCACTAGCACCATTGTGGATGAGAGTC
TCACCTTGAGTCCCACAGCATCGCCCTGCAAGTTAAGCTATGCACACTCG
AATAGCTCCAGTAATGGATCGTCGCCAGATCAGGACGATGACATAATGCT
GGACCACCAGGAGCGCACTGTTCACCACGCCAATGGAAGATCCGGAAAAG
GTCTTGGCAATATTCAGACCTACAAGGAGTACAAGGAGGCCCTTAAGCAG
CAGCGCAACCAGGAGATCAGCGTCTATAAGCAAAAGCATCCGAATGCCAA
CCACAGTCCCAATGACGACGAGGATCTTTCTCCGTCACCGCCGAGCATTT
CAAACGGATCTTCCTCGAACACACTGCCAAAGTCTATTATGAAACAGAAT
AGCAACCAAATTGGTCACAATGGGAATGGAAATGGAAGCGCGAACGGAAA
TGGAGTCGATGATGTTGTTATACCAAAGAAACCCATCCAGAAGGTGATTC
CCTCTCGGATTACAGAAATAAAGCCAGCATCCACATCCGACATTCGCTCC
GCAAATTCATCGGATTGTTTGGGCTACGTTAAGCCACAGAGTCCCATGAA
GAATGGCACAAGCAAATTTAATACGTCCAATGGTGGAGGAGTCCAAACAA
CAGTGGGAATAGTCAGTAGCACCACCATTAAATCCCCAGTCAGCTCAACC
ACCAAACTTGGCACAGTAAAGACGCATCGTTCGGTGACCTGGAACCATGA
CATCCCCGCGGAGAAGCTGAGCTTCACCATGCGCCGGGAGTTTGATCGCC
AAAGGGAGGAGACTGAGTTGATGTCACAGCTGAGAACTATCATTGAGACG
CGTCTCAAGATGACGTTGCCTGTGGATATTGCCTCTGCTCTGACGGATGG
GGTTATACTGTGTCATTTGGCCAACTATGTGCGTCCGCGATCAGTGGCCA
GCATTCATGTGCCATCTCCCGGTGTCAATAAGTTGACAATGGCCAGGTGC
CGGCGGAATGTGGATAACTTTCTGGAGGCGTGTCGACGCATTGGCGTAGA
TGAGAATCTAATTTGCTGCGCTGCCGACGTGCTGGAGGGTAAAGGTGCCG
TCCAAGTGGCCATTACGGTGGGTGAGCTTTTCCGGCTTCATGGAAATGGT
GGCTGCGGCAGTGGCAACAGCAGTGGAGCAGCCACGCCCACCAAGTCGCC
TACCAGAACGACACGTGCCACAATGTCGCCAACGCCATTGGCCGCAAGCT
TTCTAGACCAT

BO11059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-RA 2430 CG6860-PA 1..2427 17..2443 12135 100 Plus
Lrch-RC 3240 CG6860-PC 1..2251 17..2267 11195 99.8 Plus
Lrch-RB 3408 CG6860-PB 1..2251 17..2267 11195 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-RA 3449 CG6860-RA 334..2760 17..2443 12135 100 Plus
Lrch-RC 5650 CG6860-RC 334..2584 17..2267 11195 99.8 Plus
Lrch-RB 4427 CG6860-RB 334..2584 17..2267 11195 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17372905..17373521 2038..1422 3070 99.8 Minus
2L 23513712 2L 17373578..17374156 1426..848 2895 100 Minus
2L 23513712 2L 17374231..17374751 847..327 2605 100 Minus
2L 23513712 2L 17383470..17383782 329..17 1565 100 Minus
2L 23513712 2L 17368200..17368390 2443..2253 955 100 Minus
2L 23513712 2L 17372708..17372845 2176..2039 690 100 Minus
2L 23513712 2L 17372565..17372642 2254..2177 390 100 Minus
Blast to na_te.dros performed 2014-11-28 08:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 144..198 101..47 131 70.9 Minus
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 7027..7081 101..47 131 70.9 Minus

BO11059.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:40 Download gff for BO11059.complete
Subject Subject Range Query Range Percent Splice Strand
CG6860-RA 1..2430 17..2447 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:30 Download gff for BO11059.complete
Subject Subject Range Query Range Percent Splice Strand
CG6860-RA 366..2792 17..2445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:58 Download gff for BO11059.complete
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 334..2760 17..2445 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:40 Download gff for BO11059.complete
Subject Subject Range Query Range Percent Splice Strand
CG6860-RA 363..2795 14..2447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:16 Download gff for BO11059.complete
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 334..2760 17..2445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:16 Download gff for BO11059.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17372565..17372642 2177..2254 100 <- Minus
2L 17372708..17372845 2039..2176 100 <- Minus
2L 17368198..17368388 2255..2445 98 <- Minus
2L 17372905..17373517 1426..2038 100 <- Minus
2L 17373579..17374156 848..1425 100 <- Minus
2L 17374231..17374748 330..847 100 <- Minus
2L 17383470..17383782 17..329 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:58 Download gff for BO11059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17368198..17368388 2255..2445 98 <- Minus
arm_2L 17372565..17372642 2177..2254 100 <- Minus
arm_2L 17372708..17372845 2039..2176 100 <- Minus
arm_2L 17372905..17373517 1426..2038 100 <- Minus
arm_2L 17373579..17374156 848..1425 100 <- Minus
arm_2L 17374231..17374748 330..847 100 <- Minus
arm_2L 17383470..17383782 17..329 100   Minus

BO11059.pep Sequence

Translation from 16 to 2461

> BO11059.pep
MAATVYQRLHSVAVGVGSAAGSAIGSGSASLPGSGTGSGSGIGHAGNTSS
STSSALLSHSQLTRSLERILEEAHFSGELILTNRKLKDFPRTGTKYSLTD
TVIADLSRNRFAELPEEVTTFAFLETLLLYHNTIRSIPESVKQLSSLTYL
DLRSNQLSSLPREICFLPLQVLLVSNNRLTSLPDELGRLDQTLTDLDASY
NQLANLPARLGELRSLRSLSLRSNHLLYLPRELTCLSLISLDVSNNKIAS
LPLEIRHMSTLVELQLENNPLTSPPASLCMRGLVHVFKFLETQATKDEKG
SRSGGNYDGYTTLRRAPRHNSSGNVLEASTTGSTNNQRRHQVDSGYNTSD
GLDKRWSHDAPTKSKTDSPLHCVSNSTAATLPRTLPSAVHSQADLMDASL
TSSTSTIVDESLTLSPTASPCKLSYAHSNSSSNGSSPDQDDDIMLDHQER
TVHHANGRSGKGLGNIQTYKEYKEALKQQRNQEISVYKQKHPNANHSPND
DEDLSPSPPSISNGSSSNTLPKSIMKQNSNQIGHNGNGNGSANGNGVDDV
VIPKKPIQKVIPSRITEIKPASTSDIRSANSSDCLGYVKPQSPMKNGTSK
FNTSNGGGVQTTVGIVSSTTIKSPVSSTTKLGTVKTHRSVTWNHDIPAEK
LSFTMRREFDRQREETELMSQLRTIIETRLKMTLPVDIASALTDGVILCH
LANYVRPRSVASIHVPSPGVNKLTMARCRRNVDNFLEACRRIGVDENLIC
CAADVLEGKGAVQVAITVGELFRLHGNGGCGSGNSSGAATPTKSPTRTTR
ATMSPTPLAASFLDH

BO11059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-PA 809 CG6860-PA 1..809 1..809 4127 100 Plus
Lrch-PC 1079 CG6860-PC 1..756 1..756 3825 99.3 Plus
Lrch-PB 1135 CG6860-PB 1..756 1..756 3825 99.3 Plus
Lrch-PB 1135 CG6860-PB 1073..1135 747..809 328 100 Plus
f-cup-PD 474 CG9611-PD 86..339 79..312 255 31.8 Plus
f-cup-PI 522 CG9611-PI 134..387 79..312 255 31.8 Plus
f-cup-PD 474 CG9611-PD 41..212 105..275 190 31.2 Plus
f-cup-PD 474 CG9611-PD 37..192 124..278 165 35 Plus