Clone BO11064 Report

Search the DGRC for BO11064

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG8468-RA
Protein status:BO11064.pep:
Sequenced Size:2068

Clone Sequence Records

BO11064.3prime Sequence

923 bp (849 high quality bases) assembled on 2006-04-19

> BO11064.3prime
ATGGTCTAGAAAGCTTGCGGCCGCCGGCAGGGGTGTTAGCTTCTCGTTGC
GCCGCTCCTCCCATCGGCTGACCCAGGTGAGCGGGTAGCACAGGAAGGCC
GAGAGGAGGATCAGGCCACCAGCGAAGTAGAAGGCGGCGTTGTAGCTGCC
TGTCATCACATAGAGGCCACCTGCAATGGGACTGCCGAAAGTAGCTGCCA
ATCCCTGGAAGAGCATCAGGAATCCGTACGCGTTGGTCAGCTTCTCCAGT
CCGATCAGCTCCACGGCGATCAGGGATCGCAGGGCGGAGAAGCAGGCAAT
GCAGATACCGAAGAACAGGGCGAATGTCCACTGGGTGGCCGTGTTGATGA
CAATGCCGCTGCAGATGGTAGCGATGCCGCCGGCGGTTAGGGCAAAGTTG
TTCAGCCAGAGTGGCTTTACGGCAGGGAAGGAACTAAGGGATCCGCACAC
GATCCTAGCAAATGTGTTTACAACGCCAATTCCGGAGAGCACTCCATAGG
CCGCCTGTTCATCCATACCCGCTGCCTTGGCGCGATCCACCAGGAAGGTA
AAGGGCACGAAGAAGCCCATCATGGTGAGGAAGCCGCTGAAGGCCAGGCA
CATAAAGGCGGGCGATTTGAGCAGCGTGGTGTCCAACATGGTGGATAAGG
TGCGACGCACTGCCTCCGGACAGATGCGGCATCCCTTCTGCCGATCCTCC
AGCATGTCCTGCTTGGTGGGCAGACGCGTCACAGACATGTGGTAGGCCAG
CGAGGTCTGCGATTGGTATTGCGGAATCCTGGTCAGAGATCCAGAGAAGA
AGATATCGTCTCGGTACATTGGTCTGGATGAGGAGTGCGACTGTCCATGG
TGGGCCTCGTGAGCTGCAGCGGCGGATCGCTTGCCAATGTCCTGAGGTCT
GCGTCCGGATACGGTGTGACGGC

BO11064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8468-PC 2037 CG8468-RC 1130..2034 923..19 4475 99.7 Minus
CG8468-PA 2037 CG8468-RA 1130..2034 923..19 4475 99.7 Minus
CG8468-PB 2037 CG8468-RB 1130..2034 923..19 4475 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8468-RB 3961 CG8468-RB 2001..2905 923..19 4495 99.8 Minus
CG8468-RA 3396 CG8468-RA 1436..2340 923..19 4495 99.8 Minus
CG8468-RC 3417 CG8468-RC 1457..2361 923..19 4495 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14228543..14229298 923..168 3750 99.7 Minus
2R 25286936 2R 14229410..14229564 173..19 775 100 Minus
Blast to na_te.dros performed on 2015-02-09 02:43:29 has no hits.

BO11064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:08 Download gff for BO11064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8468-PC 1130..2037 15..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:15 Download gff for BO11064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8468-PB 1130..2037 15..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:49:21 Download gff for BO11064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8468-RC 1457..2365 14..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:22:51 Download gff for BO11064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8468-RC 1457..2365 14..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:22:51 Download gff for BO11064.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14228543..14229295 171..923 99 -> Minus
2R 14229413..14229568 14..170 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:49:21 Download gff for BO11064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10116048..10116800 171..923 99 -> Minus
arm_2R 10116918..10117073 14..170 98   Minus

BO11064.5prime Sequence

913 bp (848 high quality bases) assembled on 2006-04-19

> BO11064.5prime
GAAGTTATCAGTCGACATGGCCACACAACAGACCAAGTCGCAGGACGAGC
TGGCATCCAAAGGCCTGGTGTCCAAGCAGCCGGAAAACATTAAGGAGGAG
AATGAGGGCGAGGAGGAAATCGAGGAGGCAGCCGTCGTCGTGCCTCCGGA
CAGCGGATGGGCCTGGGTGGTGATGGTCGCCTCCTTCCTCTGCTGCACGG
TCATTGACGGCATCGTCTTCTGCTCCGGACTCATTCAGGAGCAGCTGATG
GCAGAGTTCGGTGTGAGCAAGGCCTACGTGGCGTTCGTATCCTCGCTGCT
CAGTGGATGCTACTTGATGGCGGGACCCTTTGTTAGTGCCATGGCCAATC
GGTTTGGCTTCCGTCCGGTCACGATCACCGGAGCCATATTCGCAGCCATC
TGCTTCGGACTCTCGTACTTTGCCACCAGTGTGGAGTATCTGTTCCTAAT
CTACGGCGTGCTCGGAGGCATTGGATTCTGTATGGTGTACATACCCGCTG
TGGTGATCATTGGATTCTACTTTGAGAAGTGGCGTGCCCTGGCCACCGGA
GTTGCGATGTGCGGTTCCGGAGTTGGCACCTTTGTCTTCGCCCCACTGAC
CAAAATCCTGCTAAAGTCCGGCTGGCGTTATACGCTGGCCATTCAGGGCA
TCATCGTGTTGTCCTGTGCCCTCTTTGGCCTGGCCTTCCGACCCATCCAA
CCCATTACGCTGTCTGTGACCAACGAGGAGGGTGATGAGCAGGAGAAGAA
GAAGTTGAATGGTCATGGCAATACAGTGGCCCCTACGCCCCAACTCCACC
AGGCCGCCTTCACCAAGCCCCTGCCCGAGGGTCGTTTCGCCTACTCGATG
CCCCACTCGGCGCACAACACGTACATGGGTGCCTCCCAGCGTAACCATAT
CCCACCGCCCAGG

BO11064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8468-PC 2037 CG8468-RC 1..882 17..898 4385 99.8 Plus
CG8468-PA 2037 CG8468-RA 1..882 17..898 4385 99.8 Plus
CG8468-PB 2037 CG8468-RB 1..882 17..898 4385 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8468-RB 3961 CG8468-RB 872..1769 17..913 4450 99.8 Plus
CG8468-RA 3396 CG8468-RA 307..1204 17..913 4450 99.8 Plus
CG8468-RC 3417 CG8468-RC 328..1225 17..913 4450 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14227414..14228311 17..913 4425 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 06:42:28 has no hits.

BO11064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:10 Download gff for BO11064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8468-PC 1..898 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:16 Download gff for BO11064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8468-PB 1..898 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:02 Download gff for BO11064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8468-RC 328..1225 17..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:02 Download gff for BO11064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8468-RC 328..1225 17..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:02 Download gff for BO11064.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14227408..14228311 9..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:02 Download gff for BO11064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10114913..10115816 9..913 99   Plus

BO11064.complete Sequence

2068 bp assembled on 2008-01-16

GenBank Submission: FJ631979

> BO11064.complete
GAAGTTATCAGTCGACATGGCCACACAACAGACCAAGTCGCAGGACGAGC
TGGCATCCAAAGGCCTGGTGTCCAAGCAGCCGGAAAACATTAAGGAGGAG
AATGAGGGCGAGGAGGAAATCGAGGAGGCAGCCGTCGTCGTGCCTCCGGA
CAGCGGATGGGCCTGGGTGGTGATGGTCGCCTCCTTCCTCTGCTGCACGG
TCATTGACGGCATCGTCTTCTGCTCCGGACTCATTCAGGAGCAGCTGATG
GCAGAGTTCGGTGTGAGCAAGGCCTACGTGGCGTTCGTATCCTCGCTGCT
CAGTGGATGCTACTTGATGGCGGGACCCTTTGTTAGTGCCATGGCCAATC
GGTTTGGCTTCCGTCCGGTCACGATCACCGGAGCCATATTCGCAGCCATC
TGCTTCGGACTCTCGTACTTTGCCACCAGTGTGGAGTATCTGTTCCTAAT
CTACGGCGTGCTCGGAGGCATTGGATTCTGTATGGTGTACATACCCGCTG
TGGTGATCATTGGATTCTACTTTGAGAAGTGGCGTGCCCTGGCCACCGGA
GTTGCGATGTGCGGTTCCGGAGTTGGCACCTTTGTCTTCGCCCCACTGAC
CAAAATCCTGCTAAAGTCCGGCTGGCGTTATACGCTGGCCATTCAGGGCA
TCATCGTGTTGTCCTGTGCCCTCTTTGGCCTGGCCTTCCGACCCATCCAA
CCCATTACGCTGTCTGTGACCAACGAGGAGGGTGATGAGCAGGAGAAGAA
GAAGTTGAATGGTCATGGCAATACAGTGGCCCCTACGCCCCAACTCCACC
AGGCCGCCTTCACCAAGCCCCTGCCCGAGGGTCGTTTCGCCTACTCGATG
CCCAACTCGGCGCACAACACGTACATGGGTGCCTCCCAGCGTAACCATTA
TCCCACCGCCCAGGAGATCTTCAAGGGCATGAACCTGGAGCGCCGACCAT
CGGGCACGGCTCAGGGCAGCAAGGGCACGGAGCTGAAGCAGCTAAGGAAG
TCGCAGCCCACCACGCCCAACGGAGATCCCCAGCAGCTTACCTTCAATCT
GCACAAGGAACTGACCACCGTGGGTGAGAACGAGGAGGAGGCCGAGAACG
ATAACCTGTTGGAGACGGAGGCCAAGCCAGTGACCATCCAGGCACGCCGT
CACACCGTATCCGGACGCAGACCTCAGGACATTGGCAAGCGATCCGCCGC
TGCAGCTCACGAGGCCCACCATGGACAGTCGCACTCCTCATCCAGACCAA
TGTACCGAGACGATATCTTCTTCTCTGGATCTCTGACCAGGATTCCGCAA
TACCAATCGCAGACCTCGCTGGCCTACCACATGTCTGTGACGCGTCTGCC
CACCAAGCAGGACATGCTGGAGGATCGGCAGAAGGGATGCCGCATCTGTC
CGGAGGCAGTGCGTCGCACCTTATCCACCATGTTGGACACCACGCTGCTC
AAATCGCCCGCCTTTATGTGCCTGGCCTTCAGCGGCTTCCTCACCATGAT
GGGCTTCTTCGTGCCCTTTACCTTCCTGGTGGATCGCGCCAAGGCAGCGG
GTATGGATGAACAGGCGGCCTATGGAGTGCTCTCCGGAATTGGCGTTGTA
AACACATTTGCTAGGATCGTGTGCGGATCCCTTAGTTCCTTCCCTGCCGT
AAAGCCACTCTGGCTGAACAACTTTGCCCTAACCGCCGGCGGCATCGCTA
CCATCTGCAGCGGCATTGTCATCAACACGGCCACCCAGTGGACATTCGCC
CTGTTCTTCGGTATCTGCATTGCCTGCTTCTCCGCCCTGCGATCCCTGAT
CGCCGTGGAGCTGATCGGACTGGAGAAGCTGACCAACGCGTACGGATTCC
TGATGCTCTTCCAGGGATTGGCAGCTACTTTCGGCAGTCCCATTGCAGGT
GGCCTCTATGTGATGACAGGCAGCTACAACGCCGCCTTCTACTTCGCTGG
TGGCCTGATCCTCCTCTCGGCCTTCCTGTGCTACCCGCTCACCTGGGTCA
GCCGATGGGAGGAGCGGCGCAACGAGAAGCTAACACCCCTGCCGGCGGCC
GCAAGCTTTCTAGACCAT

BO11064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8468-RB 2037 CG8468-PB 1..2034 17..2050 10125 99.9 Plus
CG8468-RA 2037 CG8468-PA 1..2034 17..2050 10125 99.9 Plus
CG8468-RC 2037 CG8468-PC 1..2034 17..2050 10125 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8468-RB 3961 CG8468-RB 872..2905 17..2050 10125 99.9 Plus
CG8468-RA 3396 CG8468-RA 307..2340 17..2050 10125 99.9 Plus
CG8468-RC 3417 CG8468-RC 328..2361 17..2050 10125 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14227414..14229298 17..1901 9380 99.8 Plus
2R 25286936 2R 14229410..14229564 1896..2050 775 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:10:00 has no hits.

BO11064.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:24 Download gff for BO11064.complete
Subject Subject Range Query Range Percent Splice Strand
CG8468-RB 1..2037 17..2054 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:44 Download gff for BO11064.complete
Subject Subject Range Query Range Percent Splice Strand
CG8468-RB 848..2881 17..2052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:57 Download gff for BO11064.complete
Subject Subject Range Query Range Percent Splice Strand
CG8468-RC 328..2361 17..2052 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:25 Download gff for BO11064.complete
Subject Subject Range Query Range Percent Splice Strand
CG8468-RB 848..2885 17..2055 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:22 Download gff for BO11064.complete
Subject Subject Range Query Range Percent Splice Strand
CG8468-RC 328..2361 17..2052 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:22 Download gff for BO11064.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14227414..14229295 17..1898 99 -> Plus
2R 14229413..14229564 1899..2052 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:57 Download gff for BO11064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10114919..10116800 17..1898 99 -> Plus
arm_2R 10116918..10117069 1899..2052 98   Plus

BO11064.pep Sequence

Translation from 16 to 2068

> BO11064.pep
MATQQTKSQDELASKGLVSKQPENIKEENEGEEEIEEAAVVVPPDSGWAW
VVMVASFLCCTVIDGIVFCSGLIQEQLMAEFGVSKAYVAFVSSLLSGCYL
MAGPFVSAMANRFGFRPVTITGAIFAAICFGLSYFATSVEYLFLIYGVLG
GIGFCMVYIPAVVIIGFYFEKWRALATGVAMCGSGVGTFVFAPLTKILLK
SGWRYTLAIQGIIVLSCALFGLAFRPIQPITLSVTNEEGDEQEKKKLNGH
GNTVAPTPQLHQAAFTKPLPEGRFAYSMPNSAHNTYMGASQRNHYPTAQE
IFKGMNLERRPSGTAQGSKGTELKQLRKSQPTTPNGDPQQLTFNLHKELT
TVGENEEEAENDNLLETEAKPVTIQARRHTVSGRRPQDIGKRSAAAAHEA
HHGQSHSSSRPMYRDDIFFSGSLTRIPQYQSQTSLAYHMSVTRLPTKQDM
LEDRQKGCRICPEAVRRTLSTMLDTTLLKSPAFMCLAFSGFLTMMGFFVP
FTFLVDRAKAAGMDEQAAYGVLSGIGVVNTFARIVCGSLSSFPAVKPLWL
NNFALTAGGIATICSGIVINTATQWTFALFFGICIACFSALRSLIAVELI
GLEKLTNAYGFLMLFQGLAATFGSPIAGGLYVMTGSYNAAFYFAGGLILL
SAFLCYPLTWVSRWEERRNEKLTPLPAAASFLDH

BO11064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8468-PB 678 CG8468-PB 1..678 1..678 3520 100 Plus
CG8468-PA 678 CG8468-PA 1..678 1..678 3520 100 Plus
CG8468-PC 678 CG8468-PC 1..678 1..678 3520 100 Plus
CG13907-PB 816 CG13907-PB 35..769 11..675 973 34.9 Plus
CG13907-PA 816 CG13907-PA 35..769 11..675 973 34.9 Plus