Clone BO11066 Report

Search the DGRC for BO11066

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptRASSF8-RA
Protein status:BO11066.pep: validated full length
Sequenced Size:1855

Clone Sequence Records

BO11066.3prime Sequence

916 bp (860 high quality bases) assembled on 2006-04-19

> BO11066.3prime
ATGGTCTAGAAAGCTTGCAACCCACACACCATGAGGATTTTTACTGGTTG
GAACCGCCGTTTCAAGTTGCCTGGGCGAACCGATGATCCGCCGGCTGCTG
CCCTGCTTGTTGGGTCCTTCCAATAGATGCTTGATCTCCTCCGTGGTGGT
CACAGTCAGGCTCTGCAAATTCACCTCCTTCATCTCGTTGACCAGCTGCT
CCACCTGCCGCTTCTTGTCCGCGATGGCATGCTCGATCATGAGTAGTTCC
TTCTTTAAACTATCTGCAGTTTTGTTTGAAGTGTCAGTGTTGTGCAGAGC
CTGGTCGATTTCACTCTGAATGCGCTCCATTTCCATCAAGAAGTCTCGCT
CCACAGTTTGCCTATTGGTCTGCTGTTGATGTTGCTGCTCCAGCTCAATG
TCATCCATCAGCAAGCGCATTTTGTTCTTGCATTGTAGCAGCTCTGTTTC
GCAATTGGCCAGCTTGGATCGCAGTAGAGCTATTTCTGATTTCAAAGTCT
TCTCTTGCTGCTTGACCAATTCGTTTTCCTCTTCCACATACTGCAGAGTC
TGGAGCTGTTCGCTTCCTTGCCGAAAGATTTGATCCGCCTTGGAAATCTC
ACGCGAAATAGCATCCAACTCGTGGGCGTGGTCGCGTTCTTTGCTCTCCA
AATAAACTATTTCCGTATCGAACTTTTGCAATTCCATTTGCTGGGCTGTG
ATCTTCTCCCGCTGAAACTTGATGAGCTGCAGCAAATCGTTATACTGCGT
GGTCTGGAACATGGGCTCACCCTCCTCCATGGCCTGGCTATTATTGTTGA
TGCTATTAGTGTTGTGGCTGCTATGCTGATCGTAGTCGCTGAGAAACGGA
TTCGTCGAGGAGGAGGCATTGGACATGGTGTCCGCATTGCTGCTGGCCAA
ACGCTGCCCCTGGCAC

BO11066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5053-PA 1824 CG5053-RA 924..1821 916..19 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 3429 CG5053-RA 1544..2441 916..19 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25664308..25664652 363..19 1725 100 Minus
3R 32079331 3R 25663936..25664249 674..361 1570 100 Minus
3R 32079331 3R 25663627..25663870 916..673 1220 100 Minus
Blast to na_te.dros performed 2015-02-06 17:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2998..3089 492..404 120 62.4 Minus

BO11066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:13 Download gff for BO11066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-PA 924..1824 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:21 Download gff for BO11066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-PA 924..1824 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:34:13 Download gff for BO11066.3prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 1544..2445 14..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:35:14 Download gff for BO11066.3prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 1544..2445 14..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:35:14 Download gff for BO11066.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25663627..25663870 673..916 100 -> Minus
3R 25663938..25664248 362..672 100 -> Minus
3R 25664310..25664656 14..361 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:34:13 Download gff for BO11066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21489349..21489592 673..916 100 -> Minus
arm_3R 21489660..21489970 362..672 100 -> Minus
arm_3R 21490032..21490378 14..361 99   Minus

BO11066.5prime Sequence

937 bp (785 high quality bases) assembled on 2006-04-19

> BO11066.5prime
GAAGTTATCAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGC
GGATAGTTTGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTT
GCTTTGGCCCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAG
GTGGCGCAATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGC
TGCTGCTCAAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAA
CGTTCGGAAAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCA
GCAGAACAATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAA
AGCCGCTGGGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTG
CTAAAGCAAAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAA
AAAAAGTTTCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCG
TCAAGGGAATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATG
GGAGCACCGGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAA
TAATGTAGCACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGC
TGGACATGACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTAC
AATGACTTCTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCA
GCTGAGCAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGT
ACTACAACAATAATAACAATATTGTTAATAACAATAACAACTCACCGGAG
CTGTACAAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACC
ACATATCGTGACCCGCCACCCCCGAGAAACAGCCCCA

BO11066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5053-PA 1824 CG5053-RA 1..886 17..902 4430 100 Plus
CG5053-PA 1824 CG5053-RA 887..922 902..937 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 3429 CG5053-RA 621..1542 17..937 4585 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25663144..25663625 457..937 2345 99.6 Plus
3R 32079331 3R 25662631..25663008 86..463 1890 100 Plus
3R 32079331 3R 25662415..25662487 17..89 365 100 Plus
Blast to na_te.dros performed 2015-02-12 19:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 14..59 796..840 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7052..7097 796..840 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 32..68 804..840 122 81.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7070..7106 804..840 122 81.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7048..7085 803..840 109 76.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 10..47 803..840 109 76.3 Plus

BO11066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:14 Download gff for BO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-PA 1..921 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:23 Download gff for BO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-PA 1..921 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:44:04 Download gff for BO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 611..1541 7..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:08:23 Download gff for BO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 611..1541 7..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:08:23 Download gff for BO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25662405..25662486 7..88 95 -> Plus
3R 25662634..25663007 89..462 100 -> Plus
3R 25663150..25663624 463..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:44:04 Download gff for BO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21488127..21488208 7..88 95 -> Plus
arm_3R 21488356..21488729 89..462 100 -> Plus
arm_3R 21488872..21489346 463..936 99   Plus

BO11066.complete Sequence

1855 bp assembled on 2007-10-31

GenBank Submission: FJ631980

> BO11066.complete
GAAGTTATCAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGC
GGATAGTTTGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTT
GCTTTGGCCCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAG
GTGGCGCAATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGC
TGCTGCTCAAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAA
CGTTCGGAAAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCA
GCAGAACAATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAA
AGCCGCTGGGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTG
CTAAAGCAAAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAA
AAAAAGTTTCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCG
TCAAGGGAATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATG
GGAGCACCGGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAA
TAATGTAGCACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGC
TGGACATGACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTAC
AATGACTTCTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCA
GCTGAGCAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGT
ACTACAACAATAATAACAATATTGTTAATAACAATAACAACTCACCGGAG
CTGTACAAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACC
ACCATATCGTGACCCGCCACCCCCGAGAAACAGCCCCATGTGCCAGGGGC
AGCGTTTGGCCAGCAGCAATGCGGACACCATGTCCAATGCCTCCTCCTCG
ACGAATCCGTTTCTCAGCGACTACGATCAGCATAGCAGCCACAACACTAA
TAGCATCAACAATAATAGCCAGGCCATGGAGGAGGGTGAGCCCATGTTCC
AGACCACGCAGTATAACGATTTGCTGCAGCTCATCAAGTTTCAGCGGGAG
AAGATCACAGCCCAGCAAATGGAATTGCAAAAGTTCGATACGGAAATAGT
TTATTTGGAGAGCAAAGAACGCGACCACGCCCACGAGTTGGATGCTATTT
CGCGTGAGATTTCCAAGGCGGATCAAATCTTTCGGCAAGGAAGCGAACAG
CTCCAGACTCTGCAGTATGTGGAAGAGGAAAACGAATTGGTCAAGCAGCA
AGAGAAGACTTTGAAATCAGAAATAGCTCTACTGCGATCCAAGCTGGCCA
ATTGCGAAACAGAGCTGCTACAATGCAAGAACAAAATGCGCTTGCTGATG
GATGACATTGAGCTGGAGCAGCAACATCAACAGCAGACCAATAGGCAAAC
TGTGGAGCGAGACTTCTTGATGGAAATGGAGCGCATTCAGAGTGAAATCG
ACCAGGCTCTGCACAACACTGACACTTCAAACAAAACTGCAGATAGTTTA
AAGAAGGAACTACTCATGATCGAGCATGCCATCGCGGACAAGAAGCGGCA
GGTGGAGCAGCTGGTCAACGAGATGAAGGAGGTGAATTTGCAGAGCCTGA
CTGTGACCACCACGGAGGAGATCAAGCATCTATTGGAAGGACCCAACAAG
CAGGGCAGCAGCCGGCGGATCATCGGTTCGCCCAGGCAACTTGAAACGGC
GGTTCCAACCAGTAAAAATCCTCATGGTGTGTGGGTTGCAAGCTTTCTAG
ACCAT

BO11066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 1824 CG5053-PA 1..1821 17..1837 9105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 3429 CG5053-RA 621..2441 17..1837 9105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25663144..25663870 457..1183 3620 99.9 Plus
3R 32079331 3R 25662631..25663008 86..463 1890 100 Plus
3R 32079331 3R 25664308..25664652 1493..1837 1725 100 Plus
3R 32079331 3R 25663936..25664249 1182..1495 1570 100 Plus
3R 32079331 3R 25662415..25662487 17..89 365 100 Plus
Blast to na_te.dros performed 2014-11-27 15:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 14..59 796..840 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7052..7097 796..840 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 32..68 804..840 122 81.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7070..7106 804..840 122 81.1 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2998..3089 1364..1452 120 62.4 Plus

BO11066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:25 Download gff for BO11066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 1..1824 17..1841 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:28 Download gff for BO11066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 606..2440 7..1842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:26 Download gff for BO11066.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 621..2441 17..1839 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:40 Download gff for BO11066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 616..2436 17..1839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:28 Download gff for BO11066.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 621..2441 17..1839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:28 Download gff for BO11066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25662415..25662486 17..88 100 -> Plus
3R 25662634..25663007 89..462 100 -> Plus
3R 25663150..25663870 463..1183 100 -> Plus
3R 25663938..25664248 1184..1494 100 -> Plus
3R 25664310..25664652 1495..1839 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:26 Download gff for BO11066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21488137..21488208 17..88 100 -> Plus
arm_3R 21488356..21488729 89..462 100 -> Plus
arm_3R 21488872..21489592 463..1183 100 -> Plus
arm_3R 21489660..21489970 1184..1494 100 -> Plus
arm_3R 21490032..21490374 1495..1839 99   Plus

BO11066.pep Sequence

Translation from 16 to 1855

> BO11066.pep
MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNE
RHLAPNENPMKLLLKWGEYANDVQFILQRSENKTQQQQQQQQQQQQNNNN
NNNYAVMTTTKKPLGPNNNNNNKPAPTLLKQKSNVELSYRTKELKKSFGG
HDAKQFDNIGIVKGIPQQQQLQSQQTAMGAPASPPQEQLTPQDNNNVAPL
VPKHEKSLSNPLDMTSTGSNPPAPTNGYNDFYNNNSSSNQHIYSQLSKSS
NELRRSSPNEMYYNNNNNIVNNNNNSPELYKQTPTISANGALVPPPYRDP
PPPRNSPMCQGQRLASSNADTMSNASSSTNPFLSDYDQHSSHNTNSINNN
SQAMEEGEPMFQTTQYNDLLQLIKFQREKITAQQMELQKFDTEIVYLESK
ERDHAHELDAISREISKADQIFRQGSEQLQTLQYVEEENELVKQQEKTLK
SEIALLRSKLANCETELLQCKNKMRLLMDDIELEQQHQQQTNRQTVERDF
LMEMERIQSEIDQALHNTDTSNKTADSLKKELLMIEHAIADKKRQVEQLV
NEMKEVNLQSLTVTTTEEIKHLLEGPNKQGSSRRIIGSPRQLETAVPTSK
NPHGVWVASFLDH

BO11066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-PA 607 CG5053-PA 1..607 1..607 3156 100 Plus