Clone Sequence Records
BO11066.3prime Sequence
916 bp (860 high quality bases) assembled on 2006-04-19
> BO11066.3prime
ATGGTCTAGAAAGCTTGCAACCCACACACCATGAGGATTTTTACTGGTTG
GAACCGCCGTTTCAAGTTGCCTGGGCGAACCGATGATCCGCCGGCTGCTG
CCCTGCTTGTTGGGTCCTTCCAATAGATGCTTGATCTCCTCCGTGGTGGT
CACAGTCAGGCTCTGCAAATTCACCTCCTTCATCTCGTTGACCAGCTGCT
CCACCTGCCGCTTCTTGTCCGCGATGGCATGCTCGATCATGAGTAGTTCC
TTCTTTAAACTATCTGCAGTTTTGTTTGAAGTGTCAGTGTTGTGCAGAGC
CTGGTCGATTTCACTCTGAATGCGCTCCATTTCCATCAAGAAGTCTCGCT
CCACAGTTTGCCTATTGGTCTGCTGTTGATGTTGCTGCTCCAGCTCAATG
TCATCCATCAGCAAGCGCATTTTGTTCTTGCATTGTAGCAGCTCTGTTTC
GCAATTGGCCAGCTTGGATCGCAGTAGAGCTATTTCTGATTTCAAAGTCT
TCTCTTGCTGCTTGACCAATTCGTTTTCCTCTTCCACATACTGCAGAGTC
TGGAGCTGTTCGCTTCCTTGCCGAAAGATTTGATCCGCCTTGGAAATCTC
ACGCGAAATAGCATCCAACTCGTGGGCGTGGTCGCGTTCTTTGCTCTCCA
AATAAACTATTTCCGTATCGAACTTTTGCAATTCCATTTGCTGGGCTGTG
ATCTTCTCCCGCTGAAACTTGATGAGCTGCAGCAAATCGTTATACTGCGT
GGTCTGGAACATGGGCTCACCCTCCTCCATGGCCTGGCTATTATTGTTGA
TGCTATTAGTGTTGTGGCTGCTATGCTGATCGTAGTCGCTGAGAAACGGA
TTCGTCGAGGAGGAGGCATTGGACATGGTGTCCGCATTGCTGCTGGCCAA
ACGCTGCCCCTGGCAC
BO11066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5053-PA | 1824 | CG5053-RA | 924..1821 | 916..19 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 3429 | CG5053-RA | 1544..2441 | 916..19 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25664308..25664652 | 363..19 | 1725 | 100 | Minus |
3R | 32079331 | 3R | 25663936..25664249 | 674..361 | 1570 | 100 | Minus |
3R | 32079331 | 3R | 25663627..25663870 | 916..673 | 1220 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 17:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2998..3089 | 492..404 | 120 | 62.4 | Minus |
BO11066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:13 Download gff for
BO11066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-PA | 924..1824 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:21 Download gff for
BO11066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-PA | 924..1824 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:34:13 Download gff for
BO11066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 1544..2445 | 14..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:35:14 Download gff for
BO11066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 1544..2445 | 14..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:35:14 Download gff for
BO11066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25663627..25663870 | 673..916 | 100 | -> | Minus |
3R | 25663938..25664248 | 362..672 | 100 | -> | Minus |
3R | 25664310..25664656 | 14..361 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:34:13 Download gff for
BO11066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21489349..21489592 | 673..916 | 100 | -> | Minus |
arm_3R | 21489660..21489970 | 362..672 | 100 | -> | Minus |
arm_3R | 21490032..21490378 | 14..361 | 99 | | Minus |
BO11066.5prime Sequence
937 bp (785 high quality bases) assembled on 2006-04-19
> BO11066.5prime
GAAGTTATCAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGC
GGATAGTTTGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTT
GCTTTGGCCCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAG
GTGGCGCAATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGC
TGCTGCTCAAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAA
CGTTCGGAAAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCA
GCAGAACAATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAA
AGCCGCTGGGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTG
CTAAAGCAAAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAA
AAAAAGTTTCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCG
TCAAGGGAATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATG
GGAGCACCGGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAA
TAATGTAGCACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGC
TGGACATGACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTAC
AATGACTTCTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCA
GCTGAGCAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGT
ACTACAACAATAATAACAATATTGTTAATAACAATAACAACTCACCGGAG
CTGTACAAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACC
ACATATCGTGACCCGCCACCCCCGAGAAACAGCCCCA
BO11066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5053-PA | 1824 | CG5053-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
CG5053-PA | 1824 | CG5053-RA | 887..922 | 902..937 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 3429 | CG5053-RA | 621..1542 | 17..937 | 4585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25663144..25663625 | 457..937 | 2345 | 99.6 | Plus |
3R | 32079331 | 3R | 25662631..25663008 | 86..463 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 25662415..25662487 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 796..840 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 796..840 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 32..68 | 804..840 | 122 | 81.1 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7070..7106 | 804..840 | 122 | 81.1 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7048..7085 | 803..840 | 109 | 76.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 10..47 | 803..840 | 109 | 76.3 | Plus |
BO11066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:14 Download gff for
BO11066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-PA | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:23 Download gff for
BO11066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-PA | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:44:04 Download gff for
BO11066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 611..1541 | 7..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:08:23 Download gff for
BO11066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 611..1541 | 7..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:08:23 Download gff for
BO11066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25662405..25662486 | 7..88 | 95 | -> | Plus |
3R | 25662634..25663007 | 89..462 | 100 | -> | Plus |
3R | 25663150..25663624 | 463..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:44:04 Download gff for
BO11066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21488127..21488208 | 7..88 | 95 | -> | Plus |
arm_3R | 21488356..21488729 | 89..462 | 100 | -> | Plus |
arm_3R | 21488872..21489346 | 463..936 | 99 | | Plus |
BO11066.complete Sequence
1855 bp assembled on 2007-10-31
GenBank Submission: FJ631980
> BO11066.complete
GAAGTTATCAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGC
GGATAGTTTGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTT
GCTTTGGCCCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAG
GTGGCGCAATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGC
TGCTGCTCAAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAA
CGTTCGGAAAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCA
GCAGAACAATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAA
AGCCGCTGGGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTG
CTAAAGCAAAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAA
AAAAAGTTTCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCG
TCAAGGGAATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATG
GGAGCACCGGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAA
TAATGTAGCACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGC
TGGACATGACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTAC
AATGACTTCTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCA
GCTGAGCAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGT
ACTACAACAATAATAACAATATTGTTAATAACAATAACAACTCACCGGAG
CTGTACAAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACC
ACCATATCGTGACCCGCCACCCCCGAGAAACAGCCCCATGTGCCAGGGGC
AGCGTTTGGCCAGCAGCAATGCGGACACCATGTCCAATGCCTCCTCCTCG
ACGAATCCGTTTCTCAGCGACTACGATCAGCATAGCAGCCACAACACTAA
TAGCATCAACAATAATAGCCAGGCCATGGAGGAGGGTGAGCCCATGTTCC
AGACCACGCAGTATAACGATTTGCTGCAGCTCATCAAGTTTCAGCGGGAG
AAGATCACAGCCCAGCAAATGGAATTGCAAAAGTTCGATACGGAAATAGT
TTATTTGGAGAGCAAAGAACGCGACCACGCCCACGAGTTGGATGCTATTT
CGCGTGAGATTTCCAAGGCGGATCAAATCTTTCGGCAAGGAAGCGAACAG
CTCCAGACTCTGCAGTATGTGGAAGAGGAAAACGAATTGGTCAAGCAGCA
AGAGAAGACTTTGAAATCAGAAATAGCTCTACTGCGATCCAAGCTGGCCA
ATTGCGAAACAGAGCTGCTACAATGCAAGAACAAAATGCGCTTGCTGATG
GATGACATTGAGCTGGAGCAGCAACATCAACAGCAGACCAATAGGCAAAC
TGTGGAGCGAGACTTCTTGATGGAAATGGAGCGCATTCAGAGTGAAATCG
ACCAGGCTCTGCACAACACTGACACTTCAAACAAAACTGCAGATAGTTTA
AAGAAGGAACTACTCATGATCGAGCATGCCATCGCGGACAAGAAGCGGCA
GGTGGAGCAGCTGGTCAACGAGATGAAGGAGGTGAATTTGCAGAGCCTGA
CTGTGACCACCACGGAGGAGATCAAGCATCTATTGGAAGGACCCAACAAG
CAGGGCAGCAGCCGGCGGATCATCGGTTCGCCCAGGCAACTTGAAACGGC
GGTTCCAACCAGTAAAAATCCTCATGGTGTGTGGGTTGCAAGCTTTCTAG
ACCAT
BO11066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 1824 | CG5053-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 3429 | CG5053-RA | 621..2441 | 17..1837 | 9105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25663144..25663870 | 457..1183 | 3620 | 99.9 | Plus |
3R | 32079331 | 3R | 25662631..25663008 | 86..463 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 25664308..25664652 | 1493..1837 | 1725 | 100 | Plus |
3R | 32079331 | 3R | 25663936..25664249 | 1182..1495 | 1570 | 100 | Plus |
3R | 32079331 | 3R | 25662415..25662487 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 796..840 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 796..840 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 32..68 | 804..840 | 122 | 81.1 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7070..7106 | 804..840 | 122 | 81.1 | Plus |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2998..3089 | 1364..1452 | 120 | 62.4 | Plus |
BO11066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:25 Download gff for
BO11066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-RA | 1..1824 | 17..1841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:28 Download gff for
BO11066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-RA | 606..2440 | 7..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:26 Download gff for
BO11066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 621..2441 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:40 Download gff for
BO11066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-RA | 616..2436 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:28 Download gff for
BO11066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 621..2441 | 17..1839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:28 Download gff for
BO11066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25662415..25662486 | 17..88 | 100 | -> | Plus |
3R | 25662634..25663007 | 89..462 | 100 | -> | Plus |
3R | 25663150..25663870 | 463..1183 | 100 | -> | Plus |
3R | 25663938..25664248 | 1184..1494 | 100 | -> | Plus |
3R | 25664310..25664652 | 1495..1839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:26 Download gff for
BO11066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21488137..21488208 | 17..88 | 100 | -> | Plus |
arm_3R | 21488356..21488729 | 89..462 | 100 | -> | Plus |
arm_3R | 21488872..21489592 | 463..1183 | 100 | -> | Plus |
arm_3R | 21489660..21489970 | 1184..1494 | 100 | -> | Plus |
arm_3R | 21490032..21490374 | 1495..1839 | 99 | | Plus |
BO11066.pep Sequence
Translation from 16 to 1855
> BO11066.pep
MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNE
RHLAPNENPMKLLLKWGEYANDVQFILQRSENKTQQQQQQQQQQQQNNNN
NNNYAVMTTTKKPLGPNNNNNNKPAPTLLKQKSNVELSYRTKELKKSFGG
HDAKQFDNIGIVKGIPQQQQLQSQQTAMGAPASPPQEQLTPQDNNNVAPL
VPKHEKSLSNPLDMTSTGSNPPAPTNGYNDFYNNNSSSNQHIYSQLSKSS
NELRRSSPNEMYYNNNNNIVNNNNNSPELYKQTPTISANGALVPPPYRDP
PPPRNSPMCQGQRLASSNADTMSNASSSTNPFLSDYDQHSSHNTNSINNN
SQAMEEGEPMFQTTQYNDLLQLIKFQREKITAQQMELQKFDTEIVYLESK
ERDHAHELDAISREISKADQIFRQGSEQLQTLQYVEEENELVKQQEKTLK
SEIALLRSKLANCETELLQCKNKMRLLMDDIELEQQHQQQTNRQTVERDF
LMEMERIQSEIDQALHNTDTSNKTADSLKKELLMIEHAIADKKRQVEQLV
NEMKEVNLQSLTVTTTEEIKHLLEGPNKQGSSRRIIGSPRQLETAVPTSK
NPHGVWVASFLDH
BO11066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-PA | 607 | CG5053-PA | 1..607 | 1..607 | 3156 | 100 | Plus |