Clone Sequence Records
BO11067.3prime Sequence
780 bp (779 high quality bases) assembled on 2006-04-19
> BO11067.3prime
ATGGTCTAGAAAGCTTGCCACGCCAACGCTGTTGAGGCTGCCGGAGGAGA
GGTTCTCGGAGCGACTGGACAGACGGGGGCGTTTCATGAGTACACGACCC
GGCTTGCCGGGATTTTCGATGGAACCCGCCTCTGCGGATTGATTTAGATT
GTTGTTGTTGCCGTTGTTGGAGCCATTGCTGCCGCCAGCACGTTCCAGCG
TGCGTTGTGAGCGACGCAGCGAGGAGGAGGACATCCTGCGCAGCGTGGGA
TCGTAGTCATAGCTCGACGGCCGCTGATAATAGGGCGCATCCTGGTCTGT
GTCATTCTTCTCCTCCAGCGCCTGCTGCTGCTGCTGGGCGAGTGGATTCA
AGGTTATGTGGATGTGTCGTGTTCGCTGGCGCTGCTTGGTGGGCGAGCAG
TTGCCCAGCGGCACAAAGTCATCTCTCAGCTCCGCCATCCGTGGCTTGTT
TGGATTGTTTCCCCGGCTTCTGGAATTCCTACGCCGGCAAACACAGAAAC
AGGTGCTAATCAGAAGCAGAATGAGCACTGCCCCGCCGCCGATTGTTCCC
GTCAGCATGGGACTCATATTGAATGTCTCGTTATGACTGGGAGTTGTTGT
ATCGCGGTCGCCCATTTGCAGTGTTGGCTCCTCTGTGGTGCTGGTTTTGG
GACGTTGGGTGCGCCCCTGCTTAAGGGCACTAAATTCGGATGCAGAGGCG
GCACTGAAGGACTGCAACTTGAACTCGTACATGGTGGCCGTCTCGAGGGG
TGCTATTTTAAAGCTTCTAGCATGGGCTCC
BO11067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9211-PA | 2661 | iHog-RA | 1897..2658 | 780..19 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-RA | 3276 | CG9211-RA | 2223..2984 | 780..19 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6945756..6946517 | 19..780 | 3810 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 02:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 3944..3998 | 92..38 | 113 | 67.3 | Minus |
BO11067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:15 Download gff for
BO11067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-PA | 1897..2661 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:24 Download gff for
BO11067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9211-PA | 1897..2661 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:49:06 Download gff for
BO11067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 2223..2987 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:22:39 Download gff for
BO11067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 2223..2987 | 15..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:22:39 Download gff for
BO11067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6945753..6946517 | 15..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:49:06 Download gff for
BO11067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6945753..6946517 | 15..780 | 99 | | Plus |
BO11067.5prime Sequence
868 bp (867 high quality bases) assembled on 2006-04-19
> BO11067.5prime
GAAGTTATCAGTCGACATGACGCTGCTCACATCCTCGCTGCTGCTCTTTT
CGCTGCTGACGTCGCGGCTCGAAGCAATTCCGGTTTTGGAGAAGTCCCCC
GCCCATCCTGCCCACTCTGCACATCCCGCACATCCCGCACATCCCGCACA
TCCCGCGCATCCATCGCCTGGCGTGCGAATTCTTCGCGCACCCGAATCTT
TGGTGGCGCCCCTGGGAGACGAGGTGGTGCTGGAGTGCGAGACCAGTTTG
CAGCCAGAGCGCTTCGAATGGAGCCACCGGTCCAGCAGATCTCCGGGAGC
GGGGTTCAAGTACCTTAAGACAGGCACGGCCAAAGCGAATGTCTCCCAGG
AGGCGGCCATCTCGCGACTGAGGGTGCTCGTCCGACCAGACACTCTAGGC
GAGTACCGATGCGTTGGCTGGTTCGGTCCGCTGGTGGTCACGTCTACCAT
TGCTCGATTGGAGCTGGCCAGCACTAGCCTGGTGGACGCTCAGGAATCGG
AATCACCCCTCCAATGGCGGGTGTCTGCTGGAAACTCTGTGCTCTGGTCC
TGCGGACAACAGGTGCAATCGAATCCATCTGCCAGTTGGTCCTACTATCG
AAACGGAGTGGAAATCAAACCGGAGTTCATCGGAACCAATGGAAATCTTT
TTCTAAGCAATGTATCCTCCGAGTCGTCAGGCAGCTATTCCTGCCAGGCA
ACCAATCCTGCCTCTGGCGAGAGAATTCAGCTGCCCGGCTCGCTGCAACT
ACAGGTTACACCAGAGCAGAGGTCGGAGAGTAAATCTCCACACTTGCTCA
GGGGACAGCCGAGCTCCCAAGAAATTACCATACGCGAAGGGAGTTCGCTG
TTGCTGCTGTGTCCTGGA
BO11067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9211-PA | 2661 | iHog-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-RA | 3276 | CG9211-RA | 327..1178 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6947562..6948413 | 868..17 | 4260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:06:47 has no hits.
BO11067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:15 Download gff for
BO11067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:25 Download gff for
BO11067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9211-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:06:37 Download gff for
BO11067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 323..1177 | 12..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:46:11 Download gff for
BO11067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 323..1177 | 12..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:46:11 Download gff for
BO11067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6947563..6948411 | 19..867 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:06:37 Download gff for
BO11067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6947563..6948411 | 19..867 | 100 | <- | Minus |
BO11067.complete Sequence
2692 bp (2692 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631981
> BO11067.complete
GAAGTTATCAGTCGACATGACGCTGCTCACATCCTCGCTGCTGCTCTTTT
CGCTGCTGACGTCGCGGCTCGAAGCAATTCCGGTTTTGGAGAAGTCCCCC
GCCCATCCTGCCCACTCTGCACATCCCGCACATCCCGCACATCCCGCACA
TCCCGCGCATCCATCGCCTGGCGTGCGAATTCTTCGCGCACCCGAATCTT
TGGTGGCGCCCCTGGGAGACGAGGTGGTGCTGGAGTGCGAGACCAGTTTG
CAGCCAGAGCGCTTCGAATGGAGCCACCGGTCCAGCAGATCTCCGGGAGC
GGGGTTCAAGTACCTTAAGACAGGCACGGCCAAAGCGAATGTCTCCCAGG
AGGCGGCCATCTCGCGACTGAGGGTGCTCGTCCGACCAGACACTCTAGGC
GAGTACCGATGCGTTGGCTGGTTCGGTCCGCTGGTGGTCACGTCTACCAT
TGCTCGATTGGAGCTGGCCAGCACTAGCCTGGTGGACGCTCAGGAATCGG
AATCACCCCTCCAATGGCGGGTGTCTGCTGGAAACTCTGTGCTCTGGTCC
TGCGGACAACAGGTGCAATCGAATCCATCTGCCAGTTGGTCCTACTATCG
AAACGGAGTGGAAATCAAACCGGAGTTCATCGGAACCAATGGAAATCTTT
TTCTAAGCAATGTATCCTCCGAGTCGTCAGGCAGCTATTCCTGCCAGGCA
ACCAATCCTGCCTCTGGCGAGAGAATTCAGCTGCCCGGCTCGCTGCAACT
ACAGGTTACACCAGAGCAGAGGTCGGAGAGTAAATCTCCACACTTGCTCA
GGGGACAGCCGAGCTCCCAAGAAATTACCATACGCGAAGGGAGTTCGCTG
TTGCTGCTGTGTCCTGGAGTTGGCTCACCGCCACCGACGGTTGTCTGGAG
CAGTCCCGATGTCGTGGGAGCTGTTAAGAACAAGCGTTCGAAAGTATTTG
GACACGCTTTGGAGATATCCAACACCCGAGTTAATGATGCTGGCACCTAT
ATTTGCTTTCAAGATAATGGAGTGCGGCCTGCGTTAGAACACTACATAAA
AGTGCATGTCGAGCAGCCGCCTCAGATTGTGCGACCACCCTGGGCCGATC
TTACCAACGAGGGCGATCGTTTGAAGTTGGAGTGTAAGGCCACAGGAGTG
CCAACGCCAGAGATCTACTGGCTGCTGAACGGTCACAGCAGCATCGATGA
TTCTGAGGCTGAGCTCTCCAATAATTTCCTGATATTGCACAGCGTCTTGA
AGCGTCATGCGGGCTATGTCCAATGCTTTGCACGAAACAGACTTGGTGAG
CACAGTGCGGGTACACTGCTGCAGGTGAATCCCAAGCAGATTCAGGAACC
CCGGGAATCGGGGGGTACACACAGGCCCAAGCCCAATCAGGGTTCCAGGC
AGAAGCAGATGTATCCACCGACTCCTCCAAATGTAACCCGACTTAGCGAT
GAATCCGTAATGTTGCGCTGGATGGTGCCCCGAAACGATGGGTTACCAAT
TGTCATTTTTAAGGTTCAGTACCGCATGGTTGGCAAGCGCAAGAACTGGC
AGACAACCAACGATAATATACCGTATGGAAAACCGAAGTGGAACTCCGAG
CTGGGCAAGAGCTTCACGGCTTCGGTGACGGACCTGAAGCCTCAGCACAC
CTATCGTTTCCGCATCCTAGCCGTTTACTCCAACAATGACAATAAGGAAA
GTAATACCTCGGCGAAATTTTACCTGCAGCCAGGTGCAGCACTTGATCCG
ATGCCGGTGCCAGAGCTTCTGGAGATCGAGGAATACTCTGAAACCGCTGT
GGTGCTGCACTGGAGTCTAGCCAGCGATGCGGATGAACACCTGATCACTG
GCTACTACGCCTACTATCGACCCTCGTCCTCGGCAGGGGAATATTTCAAG
GCAACCATTGAAGGAGCCCATGCTAGAAGCTTTAAAATAGCACCCCTCGA
GACGGCCACCATGTACGAGTTCAAGTTGCAGTCCTTCAGTGCCGCCTCTG
CATCCGAATTTAGTGCCCTTAAGCAGGGGCGCACCCAACGTCCCAAAACC
AGCACCACAGAGGAGCCAACACTGCAAATGGGCGACCGCGATACAACAAC
TCCCAGTCATAACGAGACATTCAATATGAGTCCCATGCTGACGGGAACAA
TCGGCGGCGGGGCAGTGCTCATTCTGCTTCTGATTAGCACCTGTTTCTGT
GTTTGCCGGCGTAGGAATTCCAGAAGCCGGGGAAACAATCCAAACAAGCC
ACGGATGGCGGAGCTGAGAGATGACTTTGTGCCGCTGGGCAACTGCTCGC
CCACCAAGCAGCGCCAGCGAACACGACACATCCACATAACCTTGAATCCA
CTCGCCCAGCAGCAGCAGCAGGCGCTGGAGGAGAAGAATGACACAGACCA
GGATGCGCCCTATTATCAGCGGCCGTCGAGCTATGACTACGATCCCACGC
TGCGCAGGATGTCCTCCTCCTCGCTGCGTCGCTCACAACGCACGCTGGAA
CGTGCTGGCGGCAGCAATGGCTCCAACAACGGCAACAACAACAATCTAAA
TCAATCCGCAGAGGCGGGTTCCATCGAAAATCCCGGCAAGCCGGGTCGTG
TACTCATGAAACGCCCCCGTCTGTCCAGTCGCTCCGAGAACCTCTCCTCC
GGCAGCCTCAACAGCGTTGGCGTGGCAAGCTTTCTAGACCAT
BO11067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-RA | 2661 | CG9211-PA | 1..2658 | 17..2674 | 13290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-RA | 3276 | CG9211-RA | 327..2984 | 17..2674 | 13290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6945756..6948413 | 2674..17 | 13290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:16:17 has no hits.
BO11067.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:41 Download gff for
BO11067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-RA | 1..2661 | 17..2678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:32 Download gff for
BO11067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-RA | 293..2957 | 12..2678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:34 Download gff for
BO11067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 327..2984 | 17..2676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:41 Download gff for
BO11067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-RA | 293..2957 | 12..2678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:07 Download gff for
BO11067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 327..2984 | 17..2676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:07 Download gff for
BO11067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6945754..6948413 | 17..2676 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:34 Download gff for
BO11067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6945754..6948413 | 17..2676 | 99 | | Minus |
BO11067.pep Sequence
Translation from 16 to 2692
> BO11067.pep
MTLLTSSLLLFSLLTSRLEAIPVLEKSPAHPAHSAHPAHPAHPAHPAHPS
PGVRILRAPESLVAPLGDEVVLECETSLQPERFEWSHRSSRSPGAGFKYL
KTGTAKANVSQEAAISRLRVLVRPDTLGEYRCVGWFGPLVVTSTIARLEL
ASTSLVDAQESESPLQWRVSAGNSVLWSCGQQVQSNPSASWSYYRNGVEI
KPEFIGTNGNLFLSNVSSESSGSYSCQATNPASGERIQLPGSLQLQVTPE
QRSESKSPHLLRGQPSSQEITIREGSSLLLLCPGVGSPPPTVVWSSPDVV
GAVKNKRSKVFGHALEISNTRVNDAGTYICFQDNGVRPALEHYIKVHVEQ
PPQIVRPPWADLTNEGDRLKLECKATGVPTPEIYWLLNGHSSIDDSEAEL
SNNFLILHSVLKRHAGYVQCFARNRLGEHSAGTLLQVNPKQIQEPRESGG
THRPKPNQGSRQKQMYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKV
QYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRI
LAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWS
LASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMY
EFKLQSFSAASASEFSALKQGRTQRPKTSTTEEPTLQMGDRDTTTPSHNE
TFNMSPMLTGTIGGGAVLILLLISTCFCVCRRRNSRSRGNNPNKPRMAEL
RDDFVPLGNCSPTKQRQRTRHIHITLNPLAQQQQQALEEKNDTDQDAPYY
QRPSSYDYDPTLRRMSSSSLRRSQRTLERAGGSNGSNNGNNNNLNQSAEA
GSIENPGKPGRVLMKRPRLSSRSENLSSGSLNSVGVASFLDH
BO11067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-PA | 886 | CG9211-PA | 1..886 | 1..886 | 4642 | 100 | Plus |
| boi-PF | 998 | CG32796-PF | 35..998 | 52..886 | 1575 | 40.1 | Plus |
| boi-PE | 998 | CG32796-PE | 35..998 | 52..886 | 1575 | 40.1 | Plus |
| boi-PB | 998 | CG32796-PB | 35..998 | 52..886 | 1575 | 40.1 | Plus |
| boi-PG | 1105 | CG32796-PG | 35..813 | 52..782 | 1530 | 44.3 | Plus |
