Clone Sequence Records
BO11068.3prime Sequence
919 bp (905 high quality bases) assembled on 2006-04-19
> BO11068.3prime
ATGGTCTAGAAAGCTTGCTGATAGCTCGCCAATTGGTGCATTCTGAAGCC
ACAGATCGTGAATGAAGTTGTAGAGATTATCGCTGACAGCCACCTTGTAG
GGCGTCGGGTTGAGCGTGCGCTTGTGATCGTTGCGCAACGTTTTCAGCGA
GATTTGCACCTTCTCGCGTACCTGCTCCAACGTGGGCAGCTGCTGGCAAA
TCTTGCCCGACTTCCAATACACCTTGTAGAGCGACTCCACGTGCGAGGGT
ATCACGTAGGCACGCTTCGACTCCTGGAACGGATGCCGGCACAGTACCTT
CTGTCCCACCGCTGGCGGCGGCTCCGATACCTTCTGCAGCAGATCGATGA
GCGCGTGACCATCGGCGCTATACAGCCGATAGGCATTCTTGTTGCCCGGC
ATCGTCACCTTCTCCACGTCCTGGCTCAGTTTGATACGCGGCTGGCCGTT
GATCTCAACGAGCTTGTACACACAACCCAGCGCCGGCTGTCGTTGGCAGG
TAACCAAATGCGTGCCAATGCCAAAGCAATCGATCTTGTGCCCCTGTTCG
TTGAGACTCAGAATGGTGTCCTCATTGATGTCGTTGGACGCCACAATGGT
CAGCTTGTTGAACCACGGCACCTTGAATCGCTCCGCCACCTTCTCGAACG
TTTCGCGTGCCAGGCAGGAAAGATAGGCCAGATCCCCGGAGTCGATTCGA
ATTCCAAGCGCATGGTAGCCCAGATCGTTGAGGGCCAAGGCCACAGCGCT
GAAATTCAGCAAGCCACTCCTGAATGACTTCTCGACATATTTTGGTAGGT
ATGCCGTCCCATTGGACACTGTGGTTGTTGTCTTTAAGGTTCCTGTTGCT
GTTGCAGTTGTTTTCGTAGTTGTTGTGCTGGTACTAGTATCTTGTATATC
TGTATCTTTTGGCGTTCTA
BO11068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3714-PC | 2004 | CG3714-RC | 1101..2001 | 919..19 | 4505 | 100 | Minus |
| CG3714-PD | 2004 | CG3714-RD | 1101..2001 | 919..19 | 4505 | 100 | Minus |
| CG3714-PB | 2004 | CG3714-RB | 1101..2001 | 919..19 | 4505 | 100 | Minus |
| CG3714-PE | 2004 | CG3714-RE | 1101..2001 | 919..19 | 4505 | 100 | Minus |
| CG3714-PA | 1668 | CG3714-RA | 913..1665 | 771..19 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3714-RH | 2818 | CG3714-RH | 1499..2399 | 919..19 | 4505 | 100 | Minus |
| CG3714-RF | 2808 | CG3714-RF | 1489..2389 | 919..19 | 4505 | 100 | Minus |
| CG3714-RE | 3089 | CG3714-RE | 1584..2484 | 919..19 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4190075..4190493 | 86..504 | 2080 | 99.8 | Plus |
| 2L | 23513712 | 2L | 4190559..4190827 | 504..772 | 1345 | 100 | Plus |
| 2L | 23513712 | 2L | 4192632..4192782 | 769..919 | 755 | 100 | Plus |
| 2L | 23513712 | 2L | 4189945..4190021 | 19..95 | 385 | 100 | Plus |
Blast to na_te.dros performed 2015-02-01 10:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6799 | 905..819 | 154 | 66.7 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 533..623 | 876..790 | 140 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2414 | 885..819 | 139 | 69.1 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3323 | 885..822 | 134 | 71.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2419 | 916..820 | 131 | 63 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2431 | 882..820 | 128 | 68.8 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 493..573 | 904..824 | 125 | 64.6 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2305..2352 | 875..828 | 123 | 72.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6778 | 875..819 | 114 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6853 | 918..819 | 112 | 59.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6819 | 882..820 | 110 | 65.6 | Minus |
BO11068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:16 Download gff for
BO11068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-PE | 1102..2004 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:27 Download gff for
BO11068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-PE | 1102..2004 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:31:31 Download gff for
BO11068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RE | 1585..2490 | 12..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:25 Download gff for
BO11068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RE | 1585..2490 | 12..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:25 Download gff for
BO11068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4189939..4190019 | 12..93 | 95 | <- | Plus |
| 2L | 4190083..4190492 | 94..503 | 100 | <- | Plus |
| 2L | 4190559..4190824 | 504..769 | 100 | <- | Plus |
| 2L | 4192633..4192781 | 770..918 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:31:31 Download gff for
BO11068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4189939..4190019 | 12..93 | 95 | <- | Plus |
| arm_2L | 4190083..4190492 | 94..503 | 100 | <- | Plus |
| arm_2L | 4190559..4190824 | 504..769 | 100 | <- | Plus |
| arm_2L | 4192633..4192781 | 770..918 | 100 | | Plus |
BO11068.5prime Sequence
911 bp (853 high quality bases) assembled on 2006-04-19
> BO11068.5prime
GAAGTTATCAGTCGACATGAACGACCGTGAATTGGGCTGTGCGGGCGGAC
AGTTTATGGATCGCGGGCGGATGAATCAGAATGGCGTTGTCCAGCCGCTG
CTCACTGATTTGTACCAAATAACCATGGCCTATGCCTATTGGAAATCCGA
TAAAACCGATGATACGGCGGTATTCGATCTGTTCTTTCGCAACAATCCAT
TCCATGGGGAATTCACCATTTTCGCCGGACTCGAGGAGTGCCTCAAATTC
CTGGATAGCTTTCACTATTCCCAGAGCGATATCGAATACCTGAAGCAAAC
ACTGCCCGAGGGCATTGAGCACGAGTTTTTTGAGTACCTCGGCAATCTGA
CGGCGCGGGATGTCACCTTGTATGCCATTGATGAGGGCACAGTAGCATTT
CCACGAGTACCCATCATTAAGATCGAGGGACCTTTGATCATCGTCCAGCT
GCTGGAGACAACACTACTCACCTTGGTAAATTATGCCAGTTTGATGGCCA
CCAATGCAGCCCGTTATCGCATGGTAGCTGGTAAACATGTCAAACTATTG
GAATTTGGACTGCGTCGTGCCCAGGGACCAGATGGAGGTCTATCCGCATC
GAAATACTCCTACACAGGCGGTTTTGATGGCACCTCCAATGTGCTGGCTG
GAAAATTGTTCAACATACCCGTAAAGGGAACGCATGCCCATGCCTATATC
ACTAGTTTCAGTAGTATTGGAGAGCTGAAGACCCGTCTAATTAAGCACAA
GCAGACAGGCATCCTGGAAGATTTGCTGGAGCATGCTGTCAGGCACCGGG
CATTGCTGTCGCATCTCCTTGACGTTTCTACGGAGGAATCTAGTGAGGGG
GAACTGGCTGCGATGGTCTCCTATGCCATCGCATTCCCTGATGGATTCAT
GGCACTTGTCG
BO11068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3714-PC | 2004 | CG3714-RC | 1..895 | 17..911 | 4475 | 100 | Plus |
| CG3714-PD | 2004 | CG3714-RD | 1..895 | 17..911 | 4475 | 100 | Plus |
| CG3714-PA | 1668 | CG3714-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
| CG3714-PB | 2004 | CG3714-RB | 1..895 | 17..911 | 4475 | 100 | Plus |
| CG3714-PE | 2004 | CG3714-RE | 1..895 | 17..911 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3714-RH | 2818 | CG3714-RH | 414..1308 | 17..911 | 4475 | 100 | Plus |
| CG3714-RG | 2576 | CG3714-RG | 322..1216 | 17..911 | 4475 | 100 | Plus |
| CG3714-RF | 2808 | CG3714-RF | 389..1283 | 17..911 | 4475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4195734..4195905 | 278..107 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 4193329..4193483 | 911..757 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 4193538..4193682 | 759..615 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 4194817..4194948 | 618..487 | 660 | 100 | Minus |
| 2L | 23513712 | 2L | 4195539..4195666 | 405..278 | 640 | 100 | Minus |
| 2L | 23513712 | 2L | 4196475..4196565 | 107..17 | 455 | 100 | Minus |
| 2L | 23513712 | 2L | 4195017..4195101 | 489..405 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:33:28 has no hits.
BO11068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:17 Download gff for
BO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-PE | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:28 Download gff for
BO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-PE | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:12 Download gff for
BO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RF | 383..1283 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:11:31 Download gff for
BO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RF | 383..1283 | 9..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:11:31 Download gff for
BO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4195734..4195904 | 108..278 | 100 | <- | Minus |
| 2L | 4196475..4196571 | 9..107 | 95 | | Minus |
| 2L | 4193329..4193481 | 759..911 | 100 | <- | Minus |
| 2L | 4193539..4193679 | 618..758 | 100 | <- | Minus |
| 2L | 4194818..4194945 | 490..617 | 100 | <- | Minus |
| 2L | 4195017..4195100 | 406..489 | 100 | <- | Minus |
| 2L | 4195539..4195665 | 279..405 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:12 Download gff for
BO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4193329..4193481 | 759..911 | 100 | <- | Minus |
| arm_2L | 4193539..4193679 | 618..758 | 100 | <- | Minus |
| arm_2L | 4194818..4194945 | 490..617 | 100 | <- | Minus |
| arm_2L | 4195017..4195100 | 406..489 | 100 | <- | Minus |
| arm_2L | 4195539..4195665 | 279..405 | 100 | <- | Minus |
| arm_2L | 4195734..4195904 | 108..278 | 100 | <- | Minus |
| arm_2L | 4196475..4196571 | 9..107 | 95 | | Minus |
BO11068.complete Sequence
2035 bp (2035 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631982
> BO11068.complete
GAAGTTATCAGTCGACATGAACGACCGTGAATTGGGCTGTGCGGGCGGAC
AGTTTATGGATCGCGGGCGGATGAATCAGAATGGCGTTGTCCAGCCGCTG
CTCACTGATTTGTACCAAATAACCATGGCCTATGCCTATTGGAAATCCGA
TAAAACCGATGATACGGCGGTATTCGATCTGTTCTTTCGCAACAATCCAT
TCCATGGGGAATTCACCATTTTCGCCGGACTCGAGGAGTGCCTCAAATTC
CTGGATAGCTTTCACTATTCCCAGAGCGATATCGAATACCTGAAGCAAAC
ACTGCCCGAGGGCATTGAGCACGAGTTTTTTGAGTACCTCGGCAATCTGA
CGGCGCGGGATGTCACCTTGTATGCCATTGATGAGGGCACAGTAGCATTT
CCACGAGTACCCATCATTAAGATCGAGGGACCTTTGATCATCGTCCAGCT
GCTGGAGACAACACTACTCACCTTGGTAAATTATGCCAGTTTGATGGCCA
CCAATGCAGCCCGTTATCGCATGGTAGCTGGTAAACATGTCAAACTATTG
GAATTTGGACTGCGTCGTGCCCAGGGACCAGATGGAGGTCTATCCGCATC
GAAATACTCCTACACAGGCGGTTTTGATGGCACCTCCAATGTGCTGGCTG
GAAAATTGTTCAACATACCCGTAAAGGGAACGCATGCCCATGCCTATATC
ACTAGTTTCAGTAGTATTGGAGAGCTGAAGACCCGTCTAATTAAGCACAA
GCAGACAGGCATCCTGGAAGATTTGCTGGAGCATGCTGTCAGGCACCGGG
CATTGCTGTCGCATCTCCTTGACGTTTCTACGGAGGAATCTAGTGAGGGG
GAACTGGCTGCGATGGTCTCCTATGCCATCGCATTCCCTGATGGATTCAT
GGCACTTGTCGATACGTACGATGTTAAGAGCCGAGAAACAGAACAAGCCA
ACACAGAACCAAAGCATATCAATGATATCAAGTCTGAGAACAGTCCGCCA
AAGCCAAAGGCAAGTCCCTCGACCAATGGCCATCAAAATGGTCAGGGCGT
TGGCCACGTAAACGGCCACAAGACCACCAATGGTCATCAGAATGGCTCTG
CTCAGAATAATGGCAGTAGAACGCCAAAAGATACAGATATACAAGATACT
AGTACCAGCACAACAACTACGAAAACAACTGCAACAGCAACAGGAACCTT
AAAGACAACAACCACAGTGTCCAATGGGACGGCATACCTACCAAAATATG
TCGAGAAGTCATTCAGGAGTGGCTTGCTGAATTTCAGCGCTGTGGCCTTG
GCCCTCAACGATCTGGGCTACCATGCGCTTGGAATTCGAATCGACTCCGG
GGATCTGGCCTATCTTTCCTGCCTGGCACGCGAAACGTTCGAGAAGGTGG
CGGAGCGATTCAAGGTGCCGTGGTTCAACAAGCTGACCATTGTGGCGTCC
AACGACATCAATGAGGACACCATTCTGAGTCTCAACGAACAGGGGCACAA
GATCGATTGCTTTGGCATTGGCACGCATTTGGTTACCTGCCAACGACAGC
CGGCGCTGGGTTGTGTGTACAAGCTCGTTGAGATCAACGGCCAGCCGCGT
ATCAAACTGAGCCAGGACGTGGAGAAGGTGACGATGCCGGGCAACAAGAA
TGCCTATCGGCTGTATAGCGCCGATGGTCACGCGCTCATCGATCTGCTGC
AGAAGGTATCGGAGCCGCCGCCAGCGGTGGGACAGAAGGTACTGTGCCGG
CATCCGTTCCAGGAGTCGAAGCGTGCCTACGTGATACCCTCGCACGTGGA
GTCGCTCTACAAGGTGTATTGGAAGTCGGGCAAGATTTGCCAGCAGCTGC
CCACGTTGGAGCAGGTACGCGAGAAGGTGCAAATCTCGCTGAAAACGTTG
CGCAACGATCACAAGCGCACGCTCAACCCGACGCCCTACAAGGTGGCTGT
CAGCGATAATCTCTACAACTTCATTCACGATCTGTGGCTTCAGAATGCAC
CAATTGGCGAGCTATCAGCAAGCTTTCTAGACCAT
BO11068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3714-RF | 2004 | CG3714-PF | 1..2001 | 17..2017 | 10005 | 100 | Plus |
| CG3714-RE | 2004 | CG3714-PE | 1..2001 | 17..2017 | 10005 | 100 | Plus |
| CG3714-RB | 2004 | CG3714-PB | 1..2001 | 17..2017 | 10005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3714-RF | 2808 | CG3714-RF | 389..2389 | 17..2017 | 10005 | 100 | Plus |
| CG3714-RE | 3089 | CG3714-RE | 484..2484 | 17..2017 | 10005 | 100 | Plus |
| CG3714-RB | 2868 | CG3714-RB | 449..2449 | 17..2017 | 10005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4190075..4190493 | 1950..1532 | 2080 | 99.8 | Minus |
| 2L | 23513712 | 2L | 4192632..4192970 | 1267..929 | 1695 | 100 | Minus |
| 2L | 23513712 | 2L | 4190559..4190827 | 1532..1264 | 1345 | 100 | Minus |
| 2L | 23513712 | 2L | 4193310..4193483 | 930..757 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 4195734..4195905 | 278..107 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 4193538..4193682 | 759..615 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 4194817..4194948 | 618..487 | 660 | 100 | Minus |
| 2L | 23513712 | 2L | 4195539..4195666 | 405..278 | 640 | 100 | Minus |
| 2L | 23513712 | 2L | 4196475..4196565 | 107..17 | 455 | 100 | Minus |
| 2L | 23513712 | 2L | 4195017..4195101 | 489..405 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 4189945..4190021 | 2017..1941 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6799 | 1131..1217 | 154 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2414 | 1112..1217 | 142 | 63.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 533..623 | 1160..1246 | 140 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2419 | 1109..1216 | 134 | 62.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3323 | 1151..1214 | 134 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2431 | 1154..1216 | 128 | 68.8 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 493..573 | 1132..1212 | 125 | 64.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2305..2352 | 1161..1208 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6778 | 1161..1217 | 114 | 66.7 | Plus |
BO11068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:25 Download gff for
BO11068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RB | 1..2004 | 17..2020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:16 Download gff for
BO11068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RB | 440..2452 | 9..2024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:24 Download gff for
BO11068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RB | 449..2449 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:26 Download gff for
BO11068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RB | 440..2452 | 9..2024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:39 Download gff for
BO11068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3714-RB | 449..2449 | 17..2019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:39 Download gff for
BO11068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4195539..4195665 | 279..405 | 100 | <- | Minus |
| 2L | 4194818..4194945 | 490..617 | 100 | <- | Minus |
| 2L | 4195017..4195100 | 406..489 | 100 | <- | Minus |
| 2L | 4195734..4195904 | 108..278 | 100 | <- | Minus |
| 2L | 4196475..4196565 | 17..107 | 100 | | Minus |
| 2L | 4189942..4190019 | 1943..2019 | 97 | <- | Minus |
| 2L | 4190083..4190492 | 1533..1942 | 100 | <- | Minus |
| 2L | 4190559..4190824 | 1267..1532 | 100 | <- | Minus |
| 2L | 4192633..4192968 | 931..1266 | 100 | <- | Minus |
| 2L | 4193310..4193481 | 759..930 | 100 | <- | Minus |
| 2L | 4193539..4193679 | 618..758 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:24 Download gff for
BO11068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4196475..4196565 | 17..107 | 100 | | Minus |
| arm_2L | 4189942..4190019 | 1943..2019 | 97 | <- | Minus |
| arm_2L | 4190083..4190492 | 1533..1942 | 100 | <- | Minus |
| arm_2L | 4190559..4190824 | 1267..1532 | 100 | <- | Minus |
| arm_2L | 4192633..4192968 | 931..1266 | 100 | <- | Minus |
| arm_2L | 4193310..4193481 | 759..930 | 100 | <- | Minus |
| arm_2L | 4193539..4193679 | 618..758 | 100 | <- | Minus |
| arm_2L | 4194818..4194945 | 490..617 | 100 | <- | Minus |
| arm_2L | 4195017..4195100 | 406..489 | 100 | <- | Minus |
| arm_2L | 4195539..4195665 | 279..405 | 100 | <- | Minus |
| arm_2L | 4195734..4195904 | 108..278 | 100 | <- | Minus |
BO11068.pep Sequence
Translation from 16 to 2035
> BO11068.pep
MNDRELGCAGGQFMDRGRMNQNGVVQPLLTDLYQITMAYAYWKSDKTDDT
AVFDLFFRNNPFHGEFTIFAGLEECLKFLDSFHYSQSDIEYLKQTLPEGI
EHEFFEYLGNLTARDVTLYAIDEGTVAFPRVPIIKIEGPLIIVQLLETTL
LTLVNYASLMATNAARYRMVAGKHVKLLEFGLRRAQGPDGGLSASKYSYT
GGFDGTSNVLAGKLFNIPVKGTHAHAYITSFSSIGELKTRLIKHKQTGIL
EDLLEHAVRHRALLSHLLDVSTEESSEGELAAMVSYAIAFPDGFMALVDT
YDVKSRETEQANTEPKHINDIKSENSPPKPKASPSTNGHQNGQGVGHVNG
HKTTNGHQNGSAQNNGSRTPKDTDIQDTSTSTTTTKTTATATGTLKTTTT
VSNGTAYLPKYVEKSFRSGLLNFSAVALALNDLGYHALGIRIDSGDLAYL
SCLARETFEKVAERFKVPWFNKLTIVASNDINEDTILSLNEQGHKIDCFG
IGTHLVTCQRQPALGCVYKLVEINGQPRIKLSQDVEKVTMPGNKNAYRLY
SADGHALIDLLQKVSEPPPAVGQKVLCRHPFQESKRAYVIPSHVESLYKV
YWKSGKICQQLPTLEQVREKVQISLKTLRNDHKRTLNPTPYKVAVSDNLY
NFIHDLWLQNAPIGELSASFLDH
BO11068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3714-PF | 667 | CG3714-PF | 1..667 | 1..667 | 3479 | 100 | Plus |
| CG3714-PE | 667 | CG3714-PE | 1..667 | 1..667 | 3479 | 100 | Plus |
| CG3714-PB | 667 | CG3714-PB | 1..667 | 1..667 | 3479 | 100 | Plus |
| CG3714-PD | 667 | CG3714-PD | 1..667 | 1..667 | 3479 | 100 | Plus |
| CG3714-PC | 667 | CG3714-PC | 1..667 | 1..667 | 3479 | 100 | Plus |
