Clone BO11069 Report

Search the DGRC for BO11069

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG10413-RA
Protein status:BO11069.pep: validated full length
Sequenced Size:2857

Clone Sequence Records

BO11069.3prime Sequence

942 bp (831 high quality bases) assembled on 2006-04-19

> BO11069.3prime
ATGGTCTAGAAAGCTTGCGAGCGTTGTGGAGGTCACCGTGCTGACACCAT
GGACGAGAATGGTGGGCGGCAAATCGGCGGTCAGTTCGGTTAGCAGTTCC
ATATAGCTGGCGCTGCGTTGCGCGAAATCCGGCGCCGAGAGCTTTGGCGG
AGCGGCCAGATAGATGAACGATAATGCCGTCTGATCCGAGCGTTCGCGTA
TGATTTGATTGGCACGCTGCATGTAGAGAAGGGAGCGATTCAGGGTCTCC
TCGCCCACCTCGTCATCATCCTCCAGCACCACATTGTCCGCCTGAGCGGT
GAACTGCTTGAGGGTGCGTGCATGTCGGCTGAAGTCGGTGTCCCGACTCC
ACTCCTGGATCTCCACAATGTCGGCTGTGATGCGCAGCTCCTTAAGAGAC
TGCTCCAGCTTCATTTTCGAGAAAATCTCCATTTGCGGGGTCTGGGTGTC
GAAAGTGCCCACTGTCCGCTCGTCGTTGGCCTCGCACAGGAAAATCCTCA
CTCTCAGATGCTTCCATTTGGCCAGCATAATCACCGCCAATTGCATCATG
AACAAAGACACCATATCGAAGGGATCTCCAGATGTTGGATTGAATATATT
GATGGGCCACACATCAATGTACTTCACATGTTTGCTCATGGAAATAAAGT
TTTTGTCCAATCTTTGGAAATTTCTGCACAAGCACAGATTCTTCTTCATC
CTAAGGGTGTCGCACAGGATCTGAACGTACTCCTGAATTTGGAATTGCTT
CGGATCGCCATCGCGTCGAATGGGGAAGTTTTGAATTTCGCCATTGTTAA
AGTCATCGGTTTTATAGGGGGAGGAAACGTTTTGAAAAAAGTCCCTGGGA
GCCTCGCTGTCGTAGAAACCAAGATAATCGTGTTTGTTTTCTTGCTCCAA
TTCCTGATAAGCGAATCAGGTGCTGGACTCCCTCGCGGATGC

BO11069.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10413-PA 2826 CG10413-RA 1972..2823 870..19 4235 99.8 Minus
CG10413-PA 2826 CG10413-RA 1898..1948 942..892 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10413-RB 4010 CG10413-RB 2227..3152 942..19 4550 99.6 Minus
CG10413-RA 3783 CG10413-RA 2000..2925 942..19 4550 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18600613..18601052 19..458 2200 100 Plus
2L 23513712 2L 18601356..18601545 637..826 950 100 Plus
2L 23513712 2L 18601114..18601293 458..637 900 100 Plus
2L 23513712 2L 18601609..18601723 830..942 460 97.4 Plus
Blast to na_te.dros performed on 2015-02-12 04:58:36 has no hits.

BO11069.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:18 Download gff for BO11069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10413-PA 1898..2826 18..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:29 Download gff for BO11069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10413-PA 1898..2826 18..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:05 Download gff for BO11069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 2000..2932 11..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:16 Download gff for BO11069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 2000..2932 11..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:16 Download gff for BO11069.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18600606..18601051 11..457 99 <- Plus
2L 18601114..18601293 458..637 100 <- Plus
2L 18601357..18601548 638..829 99 <- Plus
2L 18601609..18601723 830..942 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:05 Download gff for BO11069.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18600606..18601051 11..457 99 <- Plus
arm_2L 18601114..18601293 458..637 100 <- Plus
arm_2L 18601357..18601548 638..829 99 <- Plus
arm_2L 18601609..18601723 830..942 97   Plus

BO11069.5prime Sequence

930 bp (827 high quality bases) assembled on 2006-04-19

> BO11069.5prime
GAAGTTATCAGTCGACATGAGCGCCTCCGCGGAGCAGGAGACGGCTCCCA
TAGCTAATTCCCGTAGTGGTCGTACGGGCAGTGTTTTCCGCAGTTTCGGA
TCTTTATTCGGCGGCAGCCAAAACAGTGGCGATCGCCCCCACACCCCGCA
GGATGGCGACGGATATGTGGAGTTCGGAATGCAGGACCCGGATCGTAGTG
GCCGTACGCTCGGTACCTTTGCCGGAGTTTTTAGTCCAGTGGCTTTGTCC
ATGTTTAGTGCTTTGGTCTTCATTCGAGTCGGGTACATCGTCGGAAATGC
GGGCCTGTATGTAACCCTGCTGCAGTTCCTCATCGCCTACGGAATTCTGC
TCTTCACGGTGGCTTCGGTCTGCGCCATTTCCACCAATGGAGCCATCGAG
GGAGGGGGAGTTTATTTCATGATTAGTCGAACGCTGGGACTGGAGTTTGG
TGGCTCGATCGGAACCCTCTTTTTCTTTGCCAATGTGGTGGGATCTGCAA
TGGCCATATCCGGCTGCACTGAGGGCATCATGGATAACTTCGGACCGCGT
GGCCATTTTGTGAGCGGGGACTCCCACCTACCGGATGGGGATTGGTGGCG
TTTCCTTACCAGCAGCATGATAAACACCCTGCAACTGCTGGTTTGCCTGG
TGGGCGCCGCTCTGTTCGCCAAGACGTCAGTGATTATTTTGGCCACCGTC
ACCGTTTGCCTGTTCGCCACTTACTTTAGTTTTCTATTTGTGGGCGCCAC
CAATAACACGATACCCGTTCCTGGGGACAATATTTTATCGAATACCACAA
CATTTCTCGACTATACAGGGCTGAATGCCANCACGCTGCGGGATAATCTA
GGATCCCACTACGGTCGCGATTACACGTCGAATGGCAAACAAGTCGATTT
CTCCACCACCTTCGGTGTGCTGTTTTCCGG

BO11069.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10413-PA 2826 CG10413-RA 1..914 17..930 4526 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10413-RB 4010 CG10413-RB 325..1243 12..930 4554 99.7 Plus
CG10413-RA 3783 CG10413-RA 98..1016 12..930 4554 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18603707..18604050 760..417 1720 100 Minus
2L 23513712 2L 18604655..18604925 282..12 1340 99.6 Minus
2L 23513712 2L 18602707..18602877 930..760 829 98.8 Minus
2L 23513712 2L 18604433..18604568 416..281 680 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:33:46 has no hits.

BO11069.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:19 Download gff for BO11069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10413-PA 1..914 17..930 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:31 Download gff for BO11069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10413-PA 1..914 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:02:55 Download gff for BO11069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 96..1016 9..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:37:29 Download gff for BO11069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 96..1016 9..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:37:29 Download gff for BO11069.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18602707..18602876 761..930 98 <- Minus
2L 18603707..18604050 417..760 100 <- Minus
2L 18604433..18604567 282..416 100 <- Minus
2L 18604656..18604927 9..281 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:02:55 Download gff for BO11069.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18602707..18602876 761..930 98 <- Minus
arm_2L 18603707..18604050 417..760 100 <- Minus
arm_2L 18604433..18604567 282..416 100 <- Minus
arm_2L 18604656..18604927 9..281 99   Minus

BO11069.complete Sequence

2857 bp (2857 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631983

> BO11069.complete
GAAGTTATCAGTCGACATGAGCGCCTCCGCGGAGCAGGAGACGGCTCCCA
TAGCTAATTCCCGTAGTGGTCGTACGGGCAGTGTTTTCCGCAGTTTCGGA
TCTTTATTCGGCGGCAGCCAAAACAGTGGCGATCGCCCCCACACCCCGCA
GGATGGCGACGGATATGTGGAGTTCGGAATGCAGGACCCGGATCGTAGTG
GCCGTACGCTCGGTACCTTTGCCGGAGTTTTTAGTCCAGTGGCTTTGTCC
ATGTTTAGTGCTTTGGTCTTCATTCGAGTCGGGTACATCGTCGGAAATGC
GGGCCTGTATGTAACCCTGCTGCAGTTCCTCATCGCCTACGGAATTCTGC
TCTTCACGGTGGCTTCGGTCTGCGCCATTTCCACCAATGGAGCCATCGAG
GGAGGGGGAGTTTATTTCATGATTAGTCGAACGCTGGGACTGGAGTTTGG
TGGCTCGATCGGAACCCTCTTTTTCTTTGCCAATGTGGTGGGATCTGCAA
TGGCCATATCCGGCTGCACTGAGGGCATCATGGATAACTTCGGACCGCGT
GGCCATTTTGTGAGCGGGGACTCCCACCTACCGGATGGGGATTGGTGGCG
TTTCCTTACCAGCAGCATGATAAACACCCTGCAACTGCTGGTTTGCCTGG
TGGGCGCCGCTCTGTTCGCCAAGACGTCAGTGATTATTTTGGCCACCGTC
ACCGTTTGCCTGTTCGCCACTTACTTTAGTTTTCTATTTGTGGGCGCCAC
CAATAACACGATACCCGTTCCTGGGGACAATATTTTATCGAATACCACAA
CATTTCTCGACTATACAGGGCTGAATGCCACAACGCTGCGGGATAATCTA
GGATCCCACTACGGTCGCGATTACACGTCGAATGGCAAACAAGTCGATTT
CTCCACCACCTTCGGTGTGCTGTTTTCCGGAGTCACTGGAATAATGGCGG
GAGCGAATATGTCCGGAGAACTGAAGAACCCATCAAAGAGTATTCCCTAT
GGCACTCTCTCGGCAGTGGCGTTTACCTTCGTCTCCTACATCATCCTGTC
CTTCCTCATGAGCTGCACGACTCCGTACTTTACCATGCAGAACAATTACC
TGTTCCTGATGCCCGTGAATCTTTGGCCTCCATTTACGGCGATCGGCATT
TTGACCGCCACCTTTTCAACAAGTCTGAGCAATCTGATTGGATCCAGCAG
GATTCTGGAGGCATTGTCTAAGGATCAAGTGTTTGGCAGTCTTCTAAACT
TTGTGATTCATGGAACTTGGAAGGGCAATCCCATTGCAGCGGTTGCTGTC
AGCTGGTGTCTCGTGGAGTGCATTCTGCTTATTGGATCCTTCAACATCAT
CGCCCAGATAAATTCGGTGCTCTTCATGCTCTCCTATTTAGCCACCAACC
TGGCTTGCTTGGGCATTGAACTCACGGGAGCTCCAAACTTCCGGCCGCTA
TTTAAGTTCTTCACCTGGCACACCTGTCTGGTTGGATTACTGGGCACTCT
GATCATGATGTTTGTGATTAACTTCATCTACGCCTCTTCGTGCATTATAC
TGTGCCTCATCCTGGTGATTGCTTTACATTTGTTCTCGCCTGCCACTCAG
GCAGCGCAATGGGGCTCGATCTCCCAGGCTTTGATGTTCCACCAGGTGCG
AAAGTATCTGTTAATGCTGGATCCCCGCAAGGATCACGTTAAGTTCTGGC
GTCCGCAGATCTTACTGCTCGTGTCATCGCCACGTTCCTGCTGCCCGCTG
GTTGACTTTGTAAATGATCTCAAAAAGAGCGGTCTGTACATCATTGGTCA
TGTAAAATTGGGTGACTTCAAAGGCATCGAAGATGCCGAGGACAACCAGC
AGTGGTGGTCATTTCTAGATCACATGAGAGTCAAGGCCTTTACAGAGGTC
ACTCTCAGTCGGAGCATCCGCGAGGGAGTCCAGCACCTGATTCGCTTATC
AGGAATTGGAGCAATGAAACCAAACACGATTATCTTGGGTTTCTACGACA
GCGAGGCTCCCAGGGACTTTTTTCAAAACGGTTCCTCCCCCTATAAAACC
GATGACTTTAACAATGGCGAAATTCAAAACTTCCCCATTCGACGCGATGG
CGATCCGAAGCAATTCCAAATTCAGGAGTACGTTCAGATCCTGTGCGACA
CCCTTAGGATGAAGAAGAATCTGTGCTTGTGCAGAAATTTCCAAAGATTG
GACAAAAACTTTATTTCCATGAGCAAACATGTGAAGTACATTGATGTGTG
GCCCATCAATATATTCAATCCAACATCTGGAGATCCCTTCGATATGGTGT
CTTTGTTCATGATGCAATTGGCGGTGATTATGCTGGCCAAATGGAAGCAT
CTGAGAGTGAGGATTTTCCTGTGCGAGGCCAACGACGAGCGGACAGTGGG
CACTTTCGACACCCAGACCCCGCAAATGGAGATTTTCTCGAAAATGAAGC
TGGAGCAGTCTCTTAAGGAGCTGCGCATCACAGCCGACATTGTGGAGATC
CAGGAGTGGAGTCGGGACACCGACTTCAGCCGACATGCACGCACCCTCAA
GCAGTTCACCGCTCAGGCGGACAATGTGGTGCTGGAGGATGATGACGAGG
TGGGCGAGGAGACCCTGAATCGCTCCCTTCTCTACATGCAGCGTGCCAAT
CAAATCATACGCGAACGCTCGGATCAGACGGCATTATCGTTCATCTATCT
GGCCGCTCCGCCAAAGCTCTCGGCGCCGGATTTCGCGCAACGCAGCGCCA
GCTATATGGAACTGCTAACCGAACTGACCGCCGATTTGCCGCCCACCATT
CTCGTCCATGGTGTCAGCACGGTGACCTCCACAACGCTCGCAAGCTTTCT
AGACCAT

BO11069.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10413-RB 2826 CG10413-PB 1..2823 17..2839 14115 100 Plus
CG10413-RA 2826 CG10413-PA 1..2823 17..2839 14115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10413-RB 4010 CG10413-RB 325..3152 12..2839 14125 100 Plus
CG10413-RA 3783 CG10413-RA 98..2925 12..2839 14125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18601609..18602877 2028..760 6345 100 Minus
2L 23513712 2L 18600613..18601052 2839..2400 2200 100 Minus
2L 23513712 2L 18603707..18604050 760..417 1720 100 Minus
2L 23513712 2L 18604655..18604925 282..12 1340 99.6 Minus
2L 23513712 2L 18601356..18601548 2221..2029 965 100 Minus
2L 23513712 2L 18601114..18601293 2400..2221 900 100 Minus
2L 23513712 2L 18604433..18604568 416..281 680 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:55:57 has no hits.

BO11069.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:27 Download gff for BO11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 1..2826 17..2840 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:18 Download gff for BO11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 95..2931 9..2847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:22 Download gff for BO11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 103..2925 17..2841 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:27 Download gff for BO11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 95..2931 9..2847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:33 Download gff for BO11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10413-RA 103..2925 17..2841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:33 Download gff for BO11069.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18600611..18601051 2401..2841 99 <- Minus
2L 18601114..18601293 2221..2400 100 <- Minus
2L 18601357..18601548 2029..2220 100 <- Minus
2L 18601609..18602876 761..2028 100 <- Minus
2L 18603707..18604050 417..760 100 <- Minus
2L 18604433..18604567 282..416 100 <- Minus
2L 18604656..18604920 17..281 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:22 Download gff for BO11069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18600611..18601051 2401..2841 99 <- Minus
arm_2L 18601357..18601548 2029..2220 100 <- Minus
arm_2L 18601114..18601293 2221..2400 100 <- Minus
arm_2L 18601609..18602876 761..2028 100 <- Minus
arm_2L 18603707..18604050 417..760 100 <- Minus
arm_2L 18604433..18604567 282..416 100 <- Minus
arm_2L 18604656..18604920 17..281 100   Minus

BO11069.pep Sequence

Translation from 16 to 2857

> BO11069.pep
MSASAEQETAPIANSRSGRTGSVFRSFGSLFGGSQNSGDRPHTPQDGDGY
VEFGMQDPDRSGRTLGTFAGVFSPVALSMFSALVFIRVGYIVGNAGLYVT
LLQFLIAYGILLFTVASVCAISTNGAIEGGGVYFMISRTLGLEFGGSIGT
LFFFANVVGSAMAISGCTEGIMDNFGPRGHFVSGDSHLPDGDWWRFLTSS
MINTLQLLVCLVGAALFAKTSVIILATVTVCLFATYFSFLFVGATNNTIP
VPGDNILSNTTTFLDYTGLNATTLRDNLGSHYGRDYTSNGKQVDFSTTFG
VLFSGVTGIMAGANMSGELKNPSKSIPYGTLSAVAFTFVSYIILSFLMSC
TTPYFTMQNNYLFLMPVNLWPPFTAIGILTATFSTSLSNLIGSSRILEAL
SKDQVFGSLLNFVIHGTWKGNPIAAVAVSWCLVECILLIGSFNIIAQINS
VLFMLSYLATNLACLGIELTGAPNFRPLFKFFTWHTCLVGLLGTLIMMFV
INFIYASSCIILCLILVIALHLFSPATQAAQWGSISQALMFHQVRKYLLM
LDPRKDHVKFWRPQILLLVSSPRSCCPLVDFVNDLKKSGLYIIGHVKLGD
FKGIEDAEDNQQWWSFLDHMRVKAFTEVTLSRSIREGVQHLIRLSGIGAM
KPNTIILGFYDSEAPRDFFQNGSSPYKTDDFNNGEIQNFPIRRDGDPKQF
QIQEYVQILCDTLRMKKNLCLCRNFQRLDKNFISMSKHVKYIDVWPINIF
NPTSGDPFDMVSLFMMQLAVIMLAKWKHLRVRIFLCEANDERTVGTFDTQ
TPQMEIFSKMKLEQSLKELRITADIVEIQEWSRDTDFSRHARTLKQFTAQ
ADNVVLEDDDEVGEETLNRSLLYMQRANQIIRERSDQTALSFIYLAAPPK
LSAPDFAQRSASYMELLTELTADLPPTILVHGVSTVTSTTLASFLDH

BO11069.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10413-PB 941 CG10413-PB 1..941 1..941 4877 100 Plus
CG10413-PA 941 CG10413-PA 1..941 1..941 4877 100 Plus
Ncc69-PG 1171 CG4357-PG 186..809 29..659 652 28.3 Plus
Ncc69-PA 1171 CG4357-PA 186..809 29..659 652 28.3 Plus
Ncc69-PF 1191 CG4357-PF 186..809 29..659 652 28.3 Plus