Clone BO11071 Report

Search the DGRC for BO11071

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptTm1-RC
Protein status:BO11071.pep: validated not full length
Sequenced Size:1357

Clone Sequence Records

BO11071.3prime Sequence

944 bp (888 high quality bases) assembled on 2006-04-19

> BO11071.3prime
ATGGTCTAGAAAGCTTGCGGTGTCGTTGTTGGGATTGTTGTTGTGTTCGT
GGCTTGTGGAGGACAAGGTGGAAGTCTCTTCACCAACAGCAGCAGATGCA
ATAGTTCTGGATGCGTTATTGTTGTTGGTGCCACCAATATCGCTGGCATT
GCATGATTCTGATTTACTGATTTCAATATTGTTACTGTTACTGTTGTTGT
TATTGTTGCTTAGCTTAATAGAAGACAAATTGGTTTTTAGCTGCACCTCA
TCGTATTTCTTGTCAGCCTCCTCAGCAAGGAAACGCGCTTCCTTCAGCTG
ATTCTCGAGAGCGTCCATGCGTTCTTCATCGGCAAGGGCGCGGTTCTCAA
GAATTTTGCGAGCACGTTCGCTCTCATCGGCGGCCTGAGAGGCTTCCGAC
AGCTTGGCTGTGGCGGAGCCCAGACGCTCCTCAGAGCGCTCCAAGTCTTC
TTCGAGCAACTGGATGCGACGGTTCAGAGCGGCAACCTCGGATTCGGCCC
GTTTGAGTTGTGTGTTCATGATGTTGTGCAGCTCGTTGCGGATGATGTTG
AACTTCATCATGGTGTCCGAACTGAAGATGGATCTGCCAAAGGCGAGTCC
CGGATAATCCGCACAACGTCCCTTGTTCCGTCGAGCCTCCCGCTCCGCCA
CAATCTCGGCCGCCTCGCTGGTGCATCGCAACTTGGACCATTCCGCCGCT
TGGTTGTCATCGTCGTCGGCCAGTGCGATGCCCTCATCGATGGCCCCGGC
ACTGAGATCGGTGGCCAGGCTGTCGCTGCTTTGCTCCATGGGATTGGATC
GTTTGCTGCGTTCCTTCTTGCCTGAAGATTTCTTCTTCCGGTCGGATTTC
TCAGATTTGTCCGATTTCTCTGACCTTTCACCCTTCTCCCGCTTCTTTTT
CTTGCTCTTGGACGTGGTTGTGCCTGCTGGTGGGGCTGCATCCT

BO11071.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4898-PI 1326 Tm1-RI 398..1323 944..19 4630 100 Minus
CG4898-PC 1326 Tm1-RC 398..1323 944..19 4630 100 Minus
CG4898-PH 2037 Tm1-RH 1109..2034 944..19 4630 100 Minus
CG4898-PE 2136 Tm1-RE 1073..1772 944..245 3500 100 Minus
CG4898-PK 1557 Tm1-RK 241..494 498..245 1270 100 Minus
CG4898-PJ 858 Tm1-RJ 241..494 498..245 1270 100 Minus
CG4898-PD 858 Tm1-RD 241..494 498..245 1270 100 Minus
CG4898-PB 1020 Tm1-RB 403..656 498..245 1270 100 Minus
CG4898-PF 1506 Tm1-RF 241..494 498..245 1270 100 Minus
CG4898-PG 858 Tm1-RG 241..494 498..245 1270 100 Minus
CG4898-PL 855 Tm1-RL 241..374 498..365 670 100 Minus
CG4898-PA 759 Tm1-RA 145..278 498..365 670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 1386..2311 944..19 4630 100 Minus
Tm1-RC 2651 CG4898-RC 983..1908 944..19 4630 100 Minus
Tm1-RI 2501 CG4898-RI 833..1758 944..19 4630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288994..15289440 944..498 2235 100 Minus
3R 32079331 3R 15296590..15296936 365..19 1735 100 Minus
3R 32079331 3R 15295112..15295246 499..365 675 100 Minus
Blast to na_te.dros performed 2015-02-03 16:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2375..2507 217..87 165 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2523 210..19 158 58 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2641..2671 207..177 110 83.9 Minus

BO11071.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:20 Download gff for BO11071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 1109..2037 16..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:32 Download gff for BO11071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 1109..2037 16..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:29:04 Download gff for BO11071.3prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 833..1764 12..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:16 Download gff for BO11071.3prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 833..1764 12..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:16 Download gff for BO11071.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15288994..15289439 499..944 100 -> Minus
3R 15295113..15295246 365..498 100 -> Minus
3R 15296591..15296942 12..364 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:29:04 Download gff for BO11071.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11114716..11115161 499..944 100 -> Minus
arm_3R 11120835..11120968 365..498 100 -> Minus
arm_3R 11122313..11122664 12..364 98   Minus

BO11071.5prime Sequence

867 bp (852 high quality bases) assembled on 2006-04-19

> BO11071.5prime
GAAGTTATCAGTCGACATGGAGCACGATGACTCCAGCACCAGTGGCACTG
GCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAAGCGT
CGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAATGT
GCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGGCGACTCAAAGA
GCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGGAGGAGCAACCA
CAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGCACTTTAAGCCT
GCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAACAGTCCCACGC
CCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTAATCCGGCAGCA
GCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACAACCACGTCCAA
GAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGAGAAATCGGACA
AATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCAAGAAGGAACGC
AGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGCCTGGCCACCGA
TCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGCCGACGACGATG
ACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCAGCGAGGCGGCC
GAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGACGTTGTGCGGA
TTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGA
TGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCATGAACACACAA
CTCAAACGGGCCGAATC

BO11071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4898-PH 2037 Tm1-RH 708..1562 13..867 4275 100 Plus
CG4898-PE 2136 Tm1-RE 672..1526 13..867 4275 100 Plus
CG4898-PI 1326 Tm1-RI 1..851 17..867 4255 100 Plus
CG4898-PC 1326 Tm1-RC 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 985..1839 13..867 4275 100 Plus
Tm1-RC 2651 CG4898-RC 582..1436 13..867 4275 100 Plus
Tm1-RI 2501 CG4898-RI 432..1286 13..867 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288593..15289440 13..860 4240 100 Plus
Blast to na_te.dros performed 2015-02-11 14:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 638..711 301..229 115 63.5 Minus

BO11071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:21 Download gff for BO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 708..1562 13..867 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:33 Download gff for BO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 708..1562 13..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:21 Download gff for BO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 432..1286 13..867 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:33 Download gff for BO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 432..1286 13..867 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:33 Download gff for BO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15288593..15289444 13..867 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:21 Download gff for BO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11114315..11115166 13..867 99   Plus

BO11071.complete Sequence

1357 bp (1357 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ631984

> BO11071.complete
GAAGTTATCAGTCGACATGGAGCACGATGACTCCAGCACCAGTGGCACTG
GCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAAGCGT
CGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAATGT
GCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGGCGACTCAAAGA
GCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGGAGGAGCAACCA
CAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGCACTTTAAGCCT
GCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAACAGTCCCACGC
CCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTAATCCGGCAGCA
GCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACAACCACGTCCAA
GAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGAGAAATCGGACA
AATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCAAGAAGGAACGC
AGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGCCTGGCCACCGA
TCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGCCGACGACGATG
ACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCAGCGAGGCGGCC
GAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGACGTTGTGCGGA
TTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGA
TGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCATGAACACACAA
CTCAAACGGGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTT
GCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAG
CCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGTGCTCGC
AAAATTCTTGAGAACCGCGCCCTTGCCGATGAAGAACGCATGGACGCTCT
CGAGAATCAGCTGAAGGAAGCGCGTTTCCTTGCTGAGGAGGCTGACAAGA
AATACGATGAGGTGCAGCTAAAAACCAATTTGTCTTCTATTAAGCTAAGC
AACAATAACAACAACAGTAACAGTAACAATATTGAAATCAGTAAATCAGA
ATCATGCAATGCCAGCGATATTGGTGGCACCAACAACAATAACGCATCCA
GAACTATTGCATCTGCTGCTGTTGGTGAAGAGACTTCCACCTTGTCCTCC
ACAAGCCACGAACACAACAACAATCCCAACAACGACACCGCAAGCTTTCT
AGACCAT

BO11071.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 2037 CG4898-PH 708..2034 13..1339 6635 100 Plus
Tm1-RC 1326 CG4898-PC 1..1323 17..1339 6615 100 Plus
Tm1-RI 1326 CG4898-PI 1..1323 17..1339 6615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 985..2311 13..1339 6635 100 Plus
Tm1-RC 2651 CG4898-RC 582..1908 13..1339 6635 100 Plus
Tm1-RI 2501 CG4898-RI 432..1758 13..1339 6635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288593..15289440 13..860 4240 100 Plus
3R 32079331 3R 15296590..15296936 993..1339 1735 100 Plus
3R 32079331 3R 15295112..15295246 859..993 675 100 Plus
Blast to na_te.dros performed 2014-11-26 21:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2375..2507 1141..1271 165 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2523 1148..1339 158 58 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 638..711 301..229 115 63.5 Minus

BO11071.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:39 Download gff for BO11071.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 708..2037 13..1342 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:32 Download gff for BO11071.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 985..2317 13..1346 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:37 Download gff for BO11071.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 436..1758 17..1341 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:39 Download gff for BO11071.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 985..2317 13..1346 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:03 Download gff for BO11071.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 436..1758 17..1341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:03 Download gff for BO11071.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15296591..15296936 994..1341 99   Plus
3R 15288597..15289439 17..859 100 -> Plus
3R 15295113..15295246 860..993 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:37 Download gff for BO11071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11114319..11115161 17..859 100 -> Plus
arm_3R 11120835..11120968 860..993 100 -> Plus
arm_3R 11122313..11122658 994..1341 99   Plus

BO11071.pep Sequence

Translation from 16 to 1357

> BO11071.pep
MEHDDSSTSGTGSHTASNTSLVPASLKRRGHQHHPRFSGTRRPNVPNVQE
ILAALYRGDSKSALSNLRGETQPEEEQPQQQTEEVLPPSRSTLSLPLSES
VTNSLGSNSPTPTDESSVQDEGASNPAAALIAEDAAPPAGTTTSKSKKKK
REKGERSEKSDKSEKSDRKKKSSGKKERSKRSNPMEQSSDSLATDLSAGA
IDEGIALADDDDNQAAEWSKLRCTSEAAEIVAEREARRNKGRCADYPGLA
FGRSIFSSDTMMKFNIIRNELHNIMNTQLKRAESEVAALNRRIQLLEEDL
ERSEERLGSATAKLSEASQAADESERARKILENRALADEERMDALENQLK
EARFLAEEADKKYDEVQLKTNLSSIKLSNNNNNSNSNNIEISKSESCNAS
DIGGTNNNNASRTIASAAVGEETSTLSSTSHEHNNNPNNDTASFLDH

BO11071.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-PH 678 CG4898-PH 238..678 1..441 2205 100 Plus
Tm1-PC 441 CG4898-PC 1..441 1..441 2205 100 Plus
Tm1-PI 441 CG4898-PI 1..441 1..441 2205 100 Plus
Tm1-PE 711 CG4898-PE 226..620 1..395 1828 93.7 Plus
Tm1-PO 285 CG4898-PO 75..194 276..395 415 75.8 Plus