Clone Sequence Records
BO11071.3prime Sequence
944 bp (888 high quality bases) assembled on 2006-04-19
> BO11071.3prime
ATGGTCTAGAAAGCTTGCGGTGTCGTTGTTGGGATTGTTGTTGTGTTCGT
GGCTTGTGGAGGACAAGGTGGAAGTCTCTTCACCAACAGCAGCAGATGCA
ATAGTTCTGGATGCGTTATTGTTGTTGGTGCCACCAATATCGCTGGCATT
GCATGATTCTGATTTACTGATTTCAATATTGTTACTGTTACTGTTGTTGT
TATTGTTGCTTAGCTTAATAGAAGACAAATTGGTTTTTAGCTGCACCTCA
TCGTATTTCTTGTCAGCCTCCTCAGCAAGGAAACGCGCTTCCTTCAGCTG
ATTCTCGAGAGCGTCCATGCGTTCTTCATCGGCAAGGGCGCGGTTCTCAA
GAATTTTGCGAGCACGTTCGCTCTCATCGGCGGCCTGAGAGGCTTCCGAC
AGCTTGGCTGTGGCGGAGCCCAGACGCTCCTCAGAGCGCTCCAAGTCTTC
TTCGAGCAACTGGATGCGACGGTTCAGAGCGGCAACCTCGGATTCGGCCC
GTTTGAGTTGTGTGTTCATGATGTTGTGCAGCTCGTTGCGGATGATGTTG
AACTTCATCATGGTGTCCGAACTGAAGATGGATCTGCCAAAGGCGAGTCC
CGGATAATCCGCACAACGTCCCTTGTTCCGTCGAGCCTCCCGCTCCGCCA
CAATCTCGGCCGCCTCGCTGGTGCATCGCAACTTGGACCATTCCGCCGCT
TGGTTGTCATCGTCGTCGGCCAGTGCGATGCCCTCATCGATGGCCCCGGC
ACTGAGATCGGTGGCCAGGCTGTCGCTGCTTTGCTCCATGGGATTGGATC
GTTTGCTGCGTTCCTTCTTGCCTGAAGATTTCTTCTTCCGGTCGGATTTC
TCAGATTTGTCCGATTTCTCTGACCTTTCACCCTTCTCCCGCTTCTTTTT
CTTGCTCTTGGACGTGGTTGTGCCTGCTGGTGGGGCTGCATCCT
BO11071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4898-PI | 1326 | Tm1-RI | 398..1323 | 944..19 | 4630 | 100 | Minus |
CG4898-PC | 1326 | Tm1-RC | 398..1323 | 944..19 | 4630 | 100 | Minus |
CG4898-PH | 2037 | Tm1-RH | 1109..2034 | 944..19 | 4630 | 100 | Minus |
CG4898-PE | 2136 | Tm1-RE | 1073..1772 | 944..245 | 3500 | 100 | Minus |
CG4898-PK | 1557 | Tm1-RK | 241..494 | 498..245 | 1270 | 100 | Minus |
CG4898-PJ | 858 | Tm1-RJ | 241..494 | 498..245 | 1270 | 100 | Minus |
CG4898-PD | 858 | Tm1-RD | 241..494 | 498..245 | 1270 | 100 | Minus |
CG4898-PB | 1020 | Tm1-RB | 403..656 | 498..245 | 1270 | 100 | Minus |
CG4898-PF | 1506 | Tm1-RF | 241..494 | 498..245 | 1270 | 100 | Minus |
CG4898-PG | 858 | Tm1-RG | 241..494 | 498..245 | 1270 | 100 | Minus |
CG4898-PL | 855 | Tm1-RL | 241..374 | 498..365 | 670 | 100 | Minus |
CG4898-PA | 759 | Tm1-RA | 145..278 | 498..365 | 670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 3054 | CG4898-RH | 1386..2311 | 944..19 | 4630 | 100 | Minus |
Tm1-RC | 2651 | CG4898-RC | 983..1908 | 944..19 | 4630 | 100 | Minus |
Tm1-RI | 2501 | CG4898-RI | 833..1758 | 944..19 | 4630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15288994..15289440 | 944..498 | 2235 | 100 | Minus |
3R | 32079331 | 3R | 15296590..15296936 | 365..19 | 1735 | 100 | Minus |
3R | 32079331 | 3R | 15295112..15295246 | 499..365 | 675 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 16:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2507 | 217..87 | 165 | 62.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2523 | 210..19 | 158 | 58 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2641..2671 | 207..177 | 110 | 83.9 | Minus |
BO11071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:20 Download gff for
BO11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4898-PH | 1109..2037 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:32 Download gff for
BO11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4898-PH | 1109..2037 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:29:04 Download gff for
BO11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 833..1764 | 12..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:16 Download gff for
BO11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 833..1764 | 12..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:16 Download gff for
BO11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15288994..15289439 | 499..944 | 100 | -> | Minus |
3R | 15295113..15295246 | 365..498 | 100 | -> | Minus |
3R | 15296591..15296942 | 12..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:29:04 Download gff for
BO11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11114716..11115161 | 499..944 | 100 | -> | Minus |
arm_3R | 11120835..11120968 | 365..498 | 100 | -> | Minus |
arm_3R | 11122313..11122664 | 12..364 | 98 | | Minus |
BO11071.5prime Sequence
867 bp (852 high quality bases) assembled on 2006-04-19
> BO11071.5prime
GAAGTTATCAGTCGACATGGAGCACGATGACTCCAGCACCAGTGGCACTG
GCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAAGCGT
CGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAATGT
GCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGGCGACTCAAAGA
GCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGGAGGAGCAACCA
CAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGCACTTTAAGCCT
GCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAACAGTCCCACGC
CCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTAATCCGGCAGCA
GCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACAACCACGTCCAA
GAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGAGAAATCGGACA
AATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCAAGAAGGAACGC
AGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGCCTGGCCACCGA
TCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGCCGACGACGATG
ACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCAGCGAGGCGGCC
GAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGACGTTGTGCGGA
TTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGA
TGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCATGAACACACAA
CTCAAACGGGCCGAATC
BO11071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4898-PH | 2037 | Tm1-RH | 708..1562 | 13..867 | 4275 | 100 | Plus |
CG4898-PE | 2136 | Tm1-RE | 672..1526 | 13..867 | 4275 | 100 | Plus |
CG4898-PI | 1326 | Tm1-RI | 1..851 | 17..867 | 4255 | 100 | Plus |
CG4898-PC | 1326 | Tm1-RC | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 3054 | CG4898-RH | 985..1839 | 13..867 | 4275 | 100 | Plus |
Tm1-RC | 2651 | CG4898-RC | 582..1436 | 13..867 | 4275 | 100 | Plus |
Tm1-RI | 2501 | CG4898-RI | 432..1286 | 13..867 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15288593..15289440 | 13..860 | 4240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 14:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 638..711 | 301..229 | 115 | 63.5 | Minus |
BO11071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:21 Download gff for
BO11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4898-PH | 708..1562 | 13..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:33 Download gff for
BO11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4898-PH | 708..1562 | 13..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:00:21 Download gff for
BO11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 432..1286 | 13..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:33 Download gff for
BO11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 432..1286 | 13..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:33 Download gff for
BO11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15288593..15289444 | 13..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:00:21 Download gff for
BO11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11114315..11115166 | 13..867 | 99 | | Plus |
BO11071.complete Sequence
1357 bp (1357 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631984
> BO11071.complete
GAAGTTATCAGTCGACATGGAGCACGATGACTCCAGCACCAGTGGCACTG
GCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAAGCGT
CGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAATGT
GCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGGCGACTCAAAGA
GCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGGAGGAGCAACCA
CAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGCACTTTAAGCCT
GCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAACAGTCCCACGC
CCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTAATCCGGCAGCA
GCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACAACCACGTCCAA
GAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGAGAAATCGGACA
AATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCAAGAAGGAACGC
AGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGCCTGGCCACCGA
TCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGCCGACGACGATG
ACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCAGCGAGGCGGCC
GAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGACGTTGTGCGGA
TTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGA
TGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCATGAACACACAA
CTCAAACGGGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTT
GCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAG
CCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGTGCTCGC
AAAATTCTTGAGAACCGCGCCCTTGCCGATGAAGAACGCATGGACGCTCT
CGAGAATCAGCTGAAGGAAGCGCGTTTCCTTGCTGAGGAGGCTGACAAGA
AATACGATGAGGTGCAGCTAAAAACCAATTTGTCTTCTATTAAGCTAAGC
AACAATAACAACAACAGTAACAGTAACAATATTGAAATCAGTAAATCAGA
ATCATGCAATGCCAGCGATATTGGTGGCACCAACAACAATAACGCATCCA
GAACTATTGCATCTGCTGCTGTTGGTGAAGAGACTTCCACCTTGTCCTCC
ACAAGCCACGAACACAACAACAATCCCAACAACGACACCGCAAGCTTTCT
AGACCAT
BO11071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 2037 | CG4898-PH | 708..2034 | 13..1339 | 6635 | 100 | Plus |
Tm1-RC | 1326 | CG4898-PC | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Tm1-RI | 1326 | CG4898-PI | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 3054 | CG4898-RH | 985..2311 | 13..1339 | 6635 | 100 | Plus |
Tm1-RC | 2651 | CG4898-RC | 582..1908 | 13..1339 | 6635 | 100 | Plus |
Tm1-RI | 2501 | CG4898-RI | 432..1758 | 13..1339 | 6635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15288593..15289440 | 13..860 | 4240 | 100 | Plus |
3R | 32079331 | 3R | 15296590..15296936 | 993..1339 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 15295112..15295246 | 859..993 | 675 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2507 | 1141..1271 | 165 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2523 | 1148..1339 | 158 | 58 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 638..711 | 301..229 | 115 | 63.5 | Minus |
BO11071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:39 Download gff for
BO11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 708..2037 | 13..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:32 Download gff for
BO11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 985..2317 | 13..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:37 Download gff for
BO11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 436..1758 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:39 Download gff for
BO11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 985..2317 | 13..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:03 Download gff for
BO11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 436..1758 | 17..1341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:03 Download gff for
BO11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15296591..15296936 | 994..1341 | 99 | | Plus |
3R | 15288597..15289439 | 17..859 | 100 | -> | Plus |
3R | 15295113..15295246 | 860..993 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:37 Download gff for
BO11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11114319..11115161 | 17..859 | 100 | -> | Plus |
arm_3R | 11120835..11120968 | 860..993 | 100 | -> | Plus |
arm_3R | 11122313..11122658 | 994..1341 | 99 | | Plus |
BO11071.pep Sequence
Translation from 16 to 1357
> BO11071.pep
MEHDDSSTSGTGSHTASNTSLVPASLKRRGHQHHPRFSGTRRPNVPNVQE
ILAALYRGDSKSALSNLRGETQPEEEQPQQQTEEVLPPSRSTLSLPLSES
VTNSLGSNSPTPTDESSVQDEGASNPAAALIAEDAAPPAGTTTSKSKKKK
REKGERSEKSDKSEKSDRKKKSSGKKERSKRSNPMEQSSDSLATDLSAGA
IDEGIALADDDDNQAAEWSKLRCTSEAAEIVAEREARRNKGRCADYPGLA
FGRSIFSSDTMMKFNIIRNELHNIMNTQLKRAESEVAALNRRIQLLEEDL
ERSEERLGSATAKLSEASQAADESERARKILENRALADEERMDALENQLK
EARFLAEEADKKYDEVQLKTNLSSIKLSNNNNNSNSNNIEISKSESCNAS
DIGGTNNNNASRTIASAAVGEETSTLSSTSHEHNNNPNNDTASFLDH
BO11071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-PH | 678 | CG4898-PH | 238..678 | 1..441 | 2205 | 100 | Plus |
Tm1-PC | 441 | CG4898-PC | 1..441 | 1..441 | 2205 | 100 | Plus |
Tm1-PI | 441 | CG4898-PI | 1..441 | 1..441 | 2205 | 100 | Plus |
Tm1-PE | 711 | CG4898-PE | 226..620 | 1..395 | 1828 | 93.7 | Plus |
Tm1-PO | 285 | CG4898-PO | 75..194 | 276..395 | 415 | 75.8 | Plus |