Clone Sequence Records
BO11073.3prime Sequence
774 bp (683 high quality bases) assembled on 2006-04-19
> BO11073.3prime
ATGGTCTAGAAAGCTTGCCGTGCTGAAGCCCCGCTCGTAGGGACTCTTCA
CGTCCGTGTGCCGCGTGTGCAGATTGATTGTTGGCCCGGCGGGCCGCGTC
GACAGCTCGCACACCGTCTTAATGGCACCGGAGGCATTGACCGAGGTCGG
GGCAGAGTGCAGGGTGGCCGTGGTGTCCTTCTCCTTTGCCGCCTCGCGCT
CCTGATCGATCTGCTCCTCATCCGTAGTCCTCGGCAGCACGTAGTCCGCT
TTGCGGGGCTCCGAGCTGCCCGTAATTGACGATTTGTACTGATCAGCGTC
CAGGCCGCACAGGTAGAACTTGAAGAACTCGTACGTCGACCAGCAGATGG
CCGTGGCGGGCATTGAGTACAGAACGCGGGCGGTCGTGCCCCTAAAGAAG
CCCAATGGACCGGCCATGTGGTAGATCTTTCGACTGGCCTCGATCATGCC
GCGCGTCAGTCCTGTCTCCTGAGTATTTAGTAGCGTCTTGATCACGTCCA
GGGGCGTGGTTACAGCCGCCGCACACGCACCGGCTGCTGCACCCGCTGCC
ATATGCACTGGTGGATTGTATTTGCGTTCCAGATTCATTTTGTTCTGGAA
AAACTCGTATGTGGTAAAATGTATTGTCTGATATGGTAGATTCATGACCA
GTTGCGTGCCATATGCCCGGTAGAAGGCCTTGAAGCCTTCCCTCTTGTAG
ATATCCCGCACGCAGGATACCACCGATGTGTAGGGCGAGTTGTACATCTG
CATACGCTGTTTGATCACATCCGT
BO11073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4963-PA | 1140 | CG4963-RA | 382..1137 | 774..19 | 3780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mfrn-RA | 3037 | CG4963-RA | 1093..1848 | 774..19 | 3780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27943985..27944394 | 19..428 | 2050 | 100 | Plus |
3R | 32079331 | 3R | 27944779..27944964 | 589..774 | 930 | 100 | Plus |
3R | 32079331 | 3R | 27944553..27944714 | 427..588 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:31:04 has no hits.
BO11073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:25 Download gff for
BO11073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4963-PA | 382..1140 | 18..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:38 Download gff for
BO11073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4963-PA | 382..1140 | 18..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:43 Download gff for
BO11073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfrn-RA | 1093..1853 | 13..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:34 Download gff for
BO11073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfrn-RA | 1093..1853 | 13..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:34 Download gff for
BO11073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27944553..27944714 | 427..588 | 100 | <- | Plus |
3R | 27944779..27944964 | 589..774 | 100 | | Plus |
3R | 27943980..27944392 | 13..426 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:43 Download gff for
BO11073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23769702..23770114 | 13..426 | 99 | <- | Plus |
arm_3R | 23770275..23770436 | 427..588 | 100 | <- | Plus |
arm_3R | 23770501..23770686 | 589..774 | 100 | | Plus |
BO11073.5prime Sequence
812 bp (700 high quality bases) assembled on 2006-04-19
> BO11073.5prime
GAAGTTATCAGTCGACATGAACATCGACGACTACGAATCGCTGCCCACCA
CCAGTGTGGGTGTCAATATGACGGCGGGCGCAATTGCGGGCGTGCTGGAG
CATGTGGTCATGTATCCGCTGGACTCCGTCAAGACGCGAATGCAGAGCCT
TTCACCGCCCACAAAAAACATGAACATAGTGTCAACCCTTCGGACTATGA
TCACGCGTGAAGGCCTGTTAAGACCCATTCGGGGAGCCAGCGCCGTGGTG
CTGGGTGCTGGACCAGCACACTCGCTATACTTTGCCGCCTACGAGATGAC
CAAGGAGCTCACGGCCAAGTTCACATCGGTGAGAAACCTCAACTACGTGA
TTTCGGGAGCGGTGGCCACCCTCATACACGACGCCATTTCTAGTCCCACG
GATGTGATCAAACAGCGTATGCAGATGTACAACTCGCCCTACACATCGGT
GGTATCCTGCGTGCGGGATATCTACAAGAGGGAAGGCTTCAAGGCCTTCT
ACCGGGCATATGGCACGCAACTGGTCATGAATCTACCATATCAGACAATA
CATTTTACCACATACGAGTTTTTCCAGAACAAAATGAATCTGGAACGCAA
ATACAATCCACCAGTGCATATGGCAGCGGGTGCAGCAGCCGGTGCGTGTG
CGGCGGCTGTAACCACGCCCCTGGACGTGATCAAGACGCTACTAAATACT
CAGGAGACAGGACTGACGCGCGGCATGATCGAGGCCAGTCGAAAGATCTA
CCACATGGCCGGTCCATTGGGCTTCTTTAGGGGCACGACCGCCCGCGTTC
TGTACTCAATGC
BO11073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4963-PA | 1140 | CG4963-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mfrn-RA | 3037 | CG4963-RA | 711..1507 | 16..812 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27944779..27945015 | 583..347 | 1185 | 100 | Minus |
3R | 32079331 | 3R | 27944553..27944714 | 745..584 | 810 | 100 | Minus |
3R | 32079331 | 3R | 27945077..27945203 | 347..221 | 635 | 100 | Minus |
3R | 32079331 | 3R | 27947194..27947311 | 133..16 | 590 | 100 | Minus |
3R | 32079331 | 3R | 27945252..27945342 | 222..132 | 455 | 100 | Minus |
3R | 32079331 | 3R | 27944326..27944394 | 812..744 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:20:31 has no hits.
BO11073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:26 Download gff for
BO11073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4963-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:39 Download gff for
BO11073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4963-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:29:36 Download gff for
BO11073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfrn-RA | 706..1507 | 12..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:31:05 Download gff for
BO11073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfrn-RA | 706..1507 | 12..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:31:05 Download gff for
BO11073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27945077..27945201 | 223..347 | 100 | <- | Minus |
3R | 27945252..27945340 | 134..222 | 100 | <- | Minus |
3R | 27947194..27947316 | 12..133 | 98 | | Minus |
3R | 27944326..27944392 | 746..812 | 100 | <- | Minus |
3R | 27944553..27944714 | 584..745 | 100 | <- | Minus |
3R | 27944779..27945014 | 348..583 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:29:36 Download gff for
BO11073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23770974..23771062 | 134..222 | 100 | <- | Minus |
arm_3R | 23772916..23773038 | 12..133 | 98 | | Minus |
arm_3R | 23770048..23770114 | 746..812 | 100 | <- | Minus |
arm_3R | 23770275..23770436 | 584..745 | 100 | <- | Minus |
arm_3R | 23770501..23770736 | 348..583 | 100 | <- | Minus |
arm_3R | 23770799..23770923 | 223..347 | 100 | <- | Minus |
BO11073.complete Sequence
1171 bp (1171 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631985
> BO11073.complete
GAAGTTATCAGTCGACATGAACATCGACGACTACGAATCGCTGCCCACCA
CCAGTGTGGGTGTCAATATGACGGCGGGCGCAATTGCGGGCGTGCTGGAG
CATGTGGTCATGTATCCGCTGGACTCCGTCAAGACGCGAATGCAGAGCCT
TTCACCGCCCACAAAAAACATGAACATAGTGTCAACCCTTCGGACTATGA
TCACGCGTGAAGGCCTGTTAAGACCCATTCGGGGAGCCAGCGCCGTGGTG
CTGGGTGCTGGACCAGCACACTCGCTATACTTTGCCGCCTACGAGATGAC
CAAGGAGCTCACGGCCAAGTTCACATCGGTGAGAAACCTCAACTACGTGA
TTTCGGGAGCGGTGGCCACCCTCATACACGACGCCATTTCTAGTCCCACG
GATGTGATCAAACAGCGTATGCAGATGTACAACTCGCCCTACACATCGGT
GGTATCCTGCGTGCGGGATATCTACAAGAGGGAAGGCTTCAAGGCCTTCT
ACCGGGCATATGGCACGCAACTGGTCATGAATCTACCATATCAGACAATA
CATTTTACCACATACGAGTTTTTCCAGAACAAAATGAATCTGGAACGCAA
ATACAATCCACCAGTGCATATGGCAGCGGGTGCAGCAGCCGGTGCGTGTG
CGGCGGCTGTAACCACGCCCCTGGACGTGATCAAGACGCTACTAAATACT
CAGGAGACAGGACTGACGCGCGGCATGATCGAGGCCAGTCGAAAGATCTA
CCACATGGCCGGTCCATTGGGCTTCTTTAGGGGCACGACCGCCCGCGTTC
TGTACTCAATGCCCGCCACGGCCATCTGCTGGTCGACGTACGAGTTCTTC
AAGTTCTACCTGTGCGGCCTGGACGCTGATCAGTACAAATCGTCAATTAC
GGGCAGCTCGGAGCCCCGCAAAGCGGACTACGTGCTGCCGAGGACTACGG
ATGAGGAGCAGATCGATCAGGAGCGCGAGGCGGCAAAGGAGAAGGACACC
ACGGCCACCCTGCACTCTGCCCCGACCTCGGTCAATGCCTCCGGTGCCAT
TAAGACGGTGTGCGAGCTGTCGACGCGGCCCGCCGGGCCAACAATCAATC
TGCACACGCGGCACACGGACGTGAAGAGTCCCTACGAGCGGGGCTTCAGC
ACGGCAAGCTTTCTAGACCAT
BO11073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mfrn-RA | 1140 | CG4963-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mfrn-RA | 3037 | CG4963-RA | 711..1848 | 16..1153 | 5690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27943985..27944394 | 1153..744 | 2050 | 100 | Minus |
3R | 32079331 | 3R | 27944779..27945015 | 583..347 | 1185 | 100 | Minus |
3R | 32079331 | 3R | 27944553..27944714 | 745..584 | 810 | 100 | Minus |
3R | 32079331 | 3R | 27945077..27945203 | 347..221 | 635 | 100 | Minus |
3R | 32079331 | 3R | 27947194..27947311 | 133..16 | 590 | 100 | Minus |
3R | 32079331 | 3R | 27945252..27945342 | 222..132 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:52:24 has no hits.
BO11073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:40 Download gff for
BO11073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4963-RA | 1..1140 | 17..1154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:33 Download gff for
BO11073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4963-RA | 694..1841 | 12..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:43 Download gff for
BO11073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfrn-RA | 712..1848 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:40 Download gff for
BO11073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4963-RA | 694..1841 | 12..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:58 Download gff for
BO11073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfrn-RA | 712..1848 | 17..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:58 Download gff for
BO11073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27943983..27944392 | 746..1155 | 99 | <- | Minus |
3R | 27944553..27944714 | 584..745 | 100 | <- | Minus |
3R | 27944779..27945014 | 348..583 | 100 | <- | Minus |
3R | 27945077..27945201 | 223..347 | 100 | <- | Minus |
3R | 27945252..27945340 | 134..222 | 100 | <- | Minus |
3R | 27947194..27947310 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:43 Download gff for
BO11073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23772916..23773032 | 17..133 | 100 | | Minus |
arm_3R | 23770275..23770436 | 584..745 | 100 | <- | Minus |
arm_3R | 23769705..23770114 | 746..1155 | 99 | <- | Minus |
arm_3R | 23770501..23770736 | 348..583 | 100 | <- | Minus |
arm_3R | 23770799..23770923 | 223..347 | 100 | <- | Minus |
arm_3R | 23770974..23771062 | 134..222 | 100 | <- | Minus |
BO11073.pep Sequence
Translation from 16 to 1171
> BO11073.pep
MNIDDYESLPTTSVGVNMTAGAIAGVLEHVVMYPLDSVKTRMQSLSPPTK
NMNIVSTLRTMITREGLLRPIRGASAVVLGAGPAHSLYFAAYEMTKELTA
KFTSVRNLNYVISGAVATLIHDAISSPTDVIKQRMQMYNSPYTSVVSCVR
DIYKREGFKAFYRAYGTQLVMNLPYQTIHFTTYEFFQNKMNLERKYNPPV
HMAAGAAAGACAAAVTTPLDVIKTLLNTQETGLTRGMIEASRKIYHMAGP
LGFFRGTTARVLYSMPATAICWSTYEFFKFYLCGLDADQYKSSITGSSEP
RKADYVLPRTTDEEQIDQEREAAKEKDTTATLHSAPTSVNASGAIKTVCE
LSTRPAGPTINLHTRHTDVKSPYERGFSTASFLDH
BO11073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mfrn-PA | 379 | CG4963-PA | 1..379 | 1..379 | 1954 | 100 | Plus |
aralar1-PB | 679 | CG2139-PB | 331..606 | 19..282 | 277 | 29.3 | Plus |
aralar1-PD | 682 | CG2139-PD | 334..609 | 19..282 | 277 | 29.3 | Plus |
aralar1-PA | 682 | CG2139-PA | 334..609 | 19..282 | 277 | 29.3 | Plus |
aralar1-PF | 694 | CG2139-PF | 334..609 | 19..282 | 277 | 29.3 | Plus |