Clone BO11073 Report

Search the DGRC for BO11073

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:73
Vector:pDNR-Dual
Associated Gene/Transcriptmfrn-RA
Protein status:BO11073.pep: validated full length
Sequenced Size:1171

Clone Sequence Records

BO11073.3prime Sequence

774 bp (683 high quality bases) assembled on 2006-04-19

> BO11073.3prime
ATGGTCTAGAAAGCTTGCCGTGCTGAAGCCCCGCTCGTAGGGACTCTTCA
CGTCCGTGTGCCGCGTGTGCAGATTGATTGTTGGCCCGGCGGGCCGCGTC
GACAGCTCGCACACCGTCTTAATGGCACCGGAGGCATTGACCGAGGTCGG
GGCAGAGTGCAGGGTGGCCGTGGTGTCCTTCTCCTTTGCCGCCTCGCGCT
CCTGATCGATCTGCTCCTCATCCGTAGTCCTCGGCAGCACGTAGTCCGCT
TTGCGGGGCTCCGAGCTGCCCGTAATTGACGATTTGTACTGATCAGCGTC
CAGGCCGCACAGGTAGAACTTGAAGAACTCGTACGTCGACCAGCAGATGG
CCGTGGCGGGCATTGAGTACAGAACGCGGGCGGTCGTGCCCCTAAAGAAG
CCCAATGGACCGGCCATGTGGTAGATCTTTCGACTGGCCTCGATCATGCC
GCGCGTCAGTCCTGTCTCCTGAGTATTTAGTAGCGTCTTGATCACGTCCA
GGGGCGTGGTTACAGCCGCCGCACACGCACCGGCTGCTGCACCCGCTGCC
ATATGCACTGGTGGATTGTATTTGCGTTCCAGATTCATTTTGTTCTGGAA
AAACTCGTATGTGGTAAAATGTATTGTCTGATATGGTAGATTCATGACCA
GTTGCGTGCCATATGCCCGGTAGAAGGCCTTGAAGCCTTCCCTCTTGTAG
ATATCCCGCACGCAGGATACCACCGATGTGTAGGGCGAGTTGTACATCTG
CATACGCTGTTTGATCACATCCGT

BO11073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4963-PA 1140 CG4963-RA 382..1137 774..19 3780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-RA 3037 CG4963-RA 1093..1848 774..19 3780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27943985..27944394 19..428 2050 100 Plus
3R 32079331 3R 27944779..27944964 589..774 930 100 Plus
3R 32079331 3R 27944553..27944714 427..588 810 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:31:04 has no hits.

BO11073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:25 Download gff for BO11073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4963-PA 382..1140 18..774 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:38 Download gff for BO11073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4963-PA 382..1140 18..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:43 Download gff for BO11073.3prime
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 1093..1853 13..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:34 Download gff for BO11073.3prime
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 1093..1853 13..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:34 Download gff for BO11073.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27944553..27944714 427..588 100 <- Plus
3R 27944779..27944964 589..774 100   Plus
3R 27943980..27944392 13..426 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:43 Download gff for BO11073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23769702..23770114 13..426 99 <- Plus
arm_3R 23770275..23770436 427..588 100 <- Plus
arm_3R 23770501..23770686 589..774 100   Plus

BO11073.5prime Sequence

812 bp (700 high quality bases) assembled on 2006-04-19

> BO11073.5prime
GAAGTTATCAGTCGACATGAACATCGACGACTACGAATCGCTGCCCACCA
CCAGTGTGGGTGTCAATATGACGGCGGGCGCAATTGCGGGCGTGCTGGAG
CATGTGGTCATGTATCCGCTGGACTCCGTCAAGACGCGAATGCAGAGCCT
TTCACCGCCCACAAAAAACATGAACATAGTGTCAACCCTTCGGACTATGA
TCACGCGTGAAGGCCTGTTAAGACCCATTCGGGGAGCCAGCGCCGTGGTG
CTGGGTGCTGGACCAGCACACTCGCTATACTTTGCCGCCTACGAGATGAC
CAAGGAGCTCACGGCCAAGTTCACATCGGTGAGAAACCTCAACTACGTGA
TTTCGGGAGCGGTGGCCACCCTCATACACGACGCCATTTCTAGTCCCACG
GATGTGATCAAACAGCGTATGCAGATGTACAACTCGCCCTACACATCGGT
GGTATCCTGCGTGCGGGATATCTACAAGAGGGAAGGCTTCAAGGCCTTCT
ACCGGGCATATGGCACGCAACTGGTCATGAATCTACCATATCAGACAATA
CATTTTACCACATACGAGTTTTTCCAGAACAAAATGAATCTGGAACGCAA
ATACAATCCACCAGTGCATATGGCAGCGGGTGCAGCAGCCGGTGCGTGTG
CGGCGGCTGTAACCACGCCCCTGGACGTGATCAAGACGCTACTAAATACT
CAGGAGACAGGACTGACGCGCGGCATGATCGAGGCCAGTCGAAAGATCTA
CCACATGGCCGGTCCATTGGGCTTCTTTAGGGGCACGACCGCCCGCGTTC
TGTACTCAATGC

BO11073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4963-PA 1140 CG4963-RA 1..796 17..812 3980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-RA 3037 CG4963-RA 711..1507 16..812 3985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27944779..27945015 583..347 1185 100 Minus
3R 32079331 3R 27944553..27944714 745..584 810 100 Minus
3R 32079331 3R 27945077..27945203 347..221 635 100 Minus
3R 32079331 3R 27947194..27947311 133..16 590 100 Minus
3R 32079331 3R 27945252..27945342 222..132 455 100 Minus
3R 32079331 3R 27944326..27944394 812..744 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:20:31 has no hits.

BO11073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:26 Download gff for BO11073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4963-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:39 Download gff for BO11073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4963-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:29:36 Download gff for BO11073.5prime
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 706..1507 12..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:31:05 Download gff for BO11073.5prime
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 706..1507 12..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:31:05 Download gff for BO11073.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27945077..27945201 223..347 100 <- Minus
3R 27945252..27945340 134..222 100 <- Minus
3R 27947194..27947316 12..133 98   Minus
3R 27944326..27944392 746..812 100 <- Minus
3R 27944553..27944714 584..745 100 <- Minus
3R 27944779..27945014 348..583 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:29:36 Download gff for BO11073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23770974..23771062 134..222 100 <- Minus
arm_3R 23772916..23773038 12..133 98   Minus
arm_3R 23770048..23770114 746..812 100 <- Minus
arm_3R 23770275..23770436 584..745 100 <- Minus
arm_3R 23770501..23770736 348..583 100 <- Minus
arm_3R 23770799..23770923 223..347 100 <- Minus

BO11073.complete Sequence

1171 bp (1171 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ631985

> BO11073.complete
GAAGTTATCAGTCGACATGAACATCGACGACTACGAATCGCTGCCCACCA
CCAGTGTGGGTGTCAATATGACGGCGGGCGCAATTGCGGGCGTGCTGGAG
CATGTGGTCATGTATCCGCTGGACTCCGTCAAGACGCGAATGCAGAGCCT
TTCACCGCCCACAAAAAACATGAACATAGTGTCAACCCTTCGGACTATGA
TCACGCGTGAAGGCCTGTTAAGACCCATTCGGGGAGCCAGCGCCGTGGTG
CTGGGTGCTGGACCAGCACACTCGCTATACTTTGCCGCCTACGAGATGAC
CAAGGAGCTCACGGCCAAGTTCACATCGGTGAGAAACCTCAACTACGTGA
TTTCGGGAGCGGTGGCCACCCTCATACACGACGCCATTTCTAGTCCCACG
GATGTGATCAAACAGCGTATGCAGATGTACAACTCGCCCTACACATCGGT
GGTATCCTGCGTGCGGGATATCTACAAGAGGGAAGGCTTCAAGGCCTTCT
ACCGGGCATATGGCACGCAACTGGTCATGAATCTACCATATCAGACAATA
CATTTTACCACATACGAGTTTTTCCAGAACAAAATGAATCTGGAACGCAA
ATACAATCCACCAGTGCATATGGCAGCGGGTGCAGCAGCCGGTGCGTGTG
CGGCGGCTGTAACCACGCCCCTGGACGTGATCAAGACGCTACTAAATACT
CAGGAGACAGGACTGACGCGCGGCATGATCGAGGCCAGTCGAAAGATCTA
CCACATGGCCGGTCCATTGGGCTTCTTTAGGGGCACGACCGCCCGCGTTC
TGTACTCAATGCCCGCCACGGCCATCTGCTGGTCGACGTACGAGTTCTTC
AAGTTCTACCTGTGCGGCCTGGACGCTGATCAGTACAAATCGTCAATTAC
GGGCAGCTCGGAGCCCCGCAAAGCGGACTACGTGCTGCCGAGGACTACGG
ATGAGGAGCAGATCGATCAGGAGCGCGAGGCGGCAAAGGAGAAGGACACC
ACGGCCACCCTGCACTCTGCCCCGACCTCGGTCAATGCCTCCGGTGCCAT
TAAGACGGTGTGCGAGCTGTCGACGCGGCCCGCCGGGCCAACAATCAATC
TGCACACGCGGCACACGGACGTGAAGAGTCCCTACGAGCGGGGCTTCAGC
ACGGCAAGCTTTCTAGACCAT

BO11073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-RA 1140 CG4963-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-RA 3037 CG4963-RA 711..1848 16..1153 5690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27943985..27944394 1153..744 2050 100 Minus
3R 32079331 3R 27944779..27945015 583..347 1185 100 Minus
3R 32079331 3R 27944553..27944714 745..584 810 100 Minus
3R 32079331 3R 27945077..27945203 347..221 635 100 Minus
3R 32079331 3R 27947194..27947311 133..16 590 100 Minus
3R 32079331 3R 27945252..27945342 222..132 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:52:24 has no hits.

BO11073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:40 Download gff for BO11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4963-RA 1..1140 17..1154 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:33 Download gff for BO11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4963-RA 694..1841 12..1159 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:43 Download gff for BO11073.complete
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 712..1848 17..1155 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:40 Download gff for BO11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4963-RA 694..1841 12..1159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:58 Download gff for BO11073.complete
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 712..1848 17..1155 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:58 Download gff for BO11073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27943983..27944392 746..1155 99 <- Minus
3R 27944553..27944714 584..745 100 <- Minus
3R 27944779..27945014 348..583 100 <- Minus
3R 27945077..27945201 223..347 100 <- Minus
3R 27945252..27945340 134..222 100 <- Minus
3R 27947194..27947310 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:43 Download gff for BO11073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23772916..23773032 17..133 100   Minus
arm_3R 23770275..23770436 584..745 100 <- Minus
arm_3R 23769705..23770114 746..1155 99 <- Minus
arm_3R 23770501..23770736 348..583 100 <- Minus
arm_3R 23770799..23770923 223..347 100 <- Minus
arm_3R 23770974..23771062 134..222 100 <- Minus

BO11073.pep Sequence

Translation from 16 to 1171

> BO11073.pep
MNIDDYESLPTTSVGVNMTAGAIAGVLEHVVMYPLDSVKTRMQSLSPPTK
NMNIVSTLRTMITREGLLRPIRGASAVVLGAGPAHSLYFAAYEMTKELTA
KFTSVRNLNYVISGAVATLIHDAISSPTDVIKQRMQMYNSPYTSVVSCVR
DIYKREGFKAFYRAYGTQLVMNLPYQTIHFTTYEFFQNKMNLERKYNPPV
HMAAGAAAGACAAAVTTPLDVIKTLLNTQETGLTRGMIEASRKIYHMAGP
LGFFRGTTARVLYSMPATAICWSTYEFFKFYLCGLDADQYKSSITGSSEP
RKADYVLPRTTDEEQIDQEREAAKEKDTTATLHSAPTSVNASGAIKTVCE
LSTRPAGPTINLHTRHTDVKSPYERGFSTASFLDH

BO11073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-PA 379 CG4963-PA 1..379 1..379 1954 100 Plus
aralar1-PB 679 CG2139-PB 331..606 19..282 277 29.3 Plus
aralar1-PD 682 CG2139-PD 334..609 19..282 277 29.3 Plus
aralar1-PA 682 CG2139-PA 334..609 19..282 277 29.3 Plus
aralar1-PF 694 CG2139-PF 334..609 19..282 277 29.3 Plus