Clone BO11074 Report

Search the DGRC for BO11074

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG11714-RA
Protein status:BO11074.pep: validated full length
Sequenced Size:1183

Clone Sequence Records

BO11074.3prime Sequence

728 bp (727 high quality bases) assembled on 2006-04-19

> BO11074.3prime
ATGGTCTAGAAAGCTTGCGACGTCACTGTGTGCTGACCAGGCGCGATATC
GACGGATGGGTCGGGAAAGGTAATGCGAGGTAACCGAAGAAGCCGTTGGT
TCGTCGCGCATTAAGCTTCCTCCCATATGAACTATGCGTCGGGATTCGGA
AGGTAGGGGGGGCTTCTGTTCCGTGGTCAATGCCATCTTCAGCTGCAGTT
CATCTTTGGCCGTAACGCAGTTCTTGGCGATTTGATACATATGCTCGTAC
TTCTCAGCCAGGCTAAGGAAATTGGATTTGCCGGGTCCATCGTAGAATTC
CTTGGGCGAAAGTTTGCCAAAATCAATCAGTGCAAGTAGATCGCTGACAA
AACTTGCCTTCTTATTTGGAACGGCAAAACTGCATTCAGTTTTGAGCGGA
ACGCAGCTAGTGGACGGAAGTTCCGATTCTTGATTTTCCACTTCGTTGGT
GGTGGTGATGGTGGTGGTGTTGGCTTCAGTTGCATCCTGGCTATCCACTT
GCCCCGCGCTTTCCAATTCCTCGATACCATTATATTTTAGATACATTTCC
AGCAGACGGAAACGATCTGCCTCCGATATTTTGCTAGCAATCACTTCGAT
ATAGTGTTTAAATACCTCGCAATTGAATTCGTATACGCCAGAGTGGTCCA
AGGTGCTCTTGAAGGTGCACTTTAGCTCCCAGGCTATCTGATTTATTAAC
GACTTGCGATTCATGCGATGCGCACACT

BO11074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-PA 1152 CG11714-RA 440..1149 728..19 3550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 585..1294 728..19 3550 100 Minus
CG11714-RC 1614 CG11714-RC 549..1258 728..19 3550 100 Minus
CG11714-RA 1650 CG11714-RA 585..1294 728..19 3550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11521369..11522078 19..728 3550 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:31:24 has no hits.

BO11074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:27 Download gff for BO11074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-PA 440..1152 15..728 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:40 Download gff for BO11074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-PA 440..1152 15..728 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:45 Download gff for BO11074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 585..1300 12..728 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:38 Download gff for BO11074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 585..1300 12..728 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:38 Download gff for BO11074.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11521363..11522078 12..728 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:45 Download gff for BO11074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11514463..11515178 12..728 99   Plus

BO11074.5prime Sequence

916 bp (759 high quality bases) assembled on 2006-04-19

> BO11074.5prime
GAAGTTATCAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATT
CCAAAATGCGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACG
GATTGCACATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCC
CTGCCACAAATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGC
TCTATGGCGACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGAT
GTACAACCGGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGA
GTGCGATAAACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTG
AGTTTGCTAACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAG
GATTTGCTGATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCT
ATTCCAGTGTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAG
CCTGGGAGCTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTA
TACGAATTCAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAG
CAAAATATCGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAAT
ATAATGGTATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGAT
GCAACTGAAGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAA
TCAAGAATCGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTGAAT
GCAGTTTTGCCGTTCCAAATAAGAAGGCAAGTTTTGTCAGCGATCTACTT
GCACTGATTGATTTTGGCAAACTTTCGCCCAAGGAATTCTACGATGGACC
CGGCAAAACCATTTCC

BO11074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-PA 1152 CG11714-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 146..1046 17..916 4465 99.8 Plus
CG11714-RA 1650 CG11714-RA 146..1046 17..916 4465 99.8 Plus
Fuca-RC 3513 CG6128-RC 146..1046 17..916 4465 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11521623..11522507 911..27 4410 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 21:37:21 has no hits.

BO11074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:27 Download gff for BO11074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-PA 1..901 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:42 Download gff for BO11074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-PA 1..901 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:39 Download gff for BO11074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 141..1046 11..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:08 Download gff for BO11074.5prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RC 141..1046 11..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:08 Download gff for BO11074.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11521617..11522513 23..916 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:39 Download gff for BO11074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11514717..11515613 23..916 99   Minus

BO11074.complete Sequence

1183 bp (1183 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ631986

> BO11074.complete
GAAGTTATCAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATT
CCAAAATGCGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACG
GATTGCACATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCC
CTGCCACAAATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGC
TCTATGGCGACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGAT
GTACAACCGGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGA
GTGCGATAAACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTG
AGTTTGCTAACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAG
GATTTGCTGATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCT
ATTCCAGTGTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAG
CCTGGGAGCTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTA
TACGAATTCAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAG
CAAAATATCGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAAT
ATAATGGTATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGAT
GCAACTGAAGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAA
TCAAGAATCGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTGAAT
GCAGTTTTGCCGTTCCAAATAAGAAGGCAAGTTTTGTCAGCGATCTACTT
GCACTGATTGATTTTGGCAAACTTTCGCCCAAGGAATTCTACGATGGACC
CGGCAAATCCAATTTCCTTAGCCTGGCTGAGAAGTACGAGCATATGTATC
AAATCGCCAAGAACTGCGTTACGGCCAAAGATGAACTGCAGCTGAAGATG
GCATTGACCACGGAACAGAAGCCCCCCCTACCTTCCGAATCCCGACGCAT
AGTTCATATGGGAGGAAGCTTAATGCGCGACGAACCAACGGCTTCTTCGG
TTACCTCGCATTACCTTTCCCGACCCATCCGTCGATATCGCGCCTGGTCA
GCACACAGTGACGTCGCAAGCTTTCTAGACCAT

BO11074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 1152 CG11714-PD 1..1149 17..1165 5745 100 Plus
CG11714-RA 1152 CG11714-PA 1..1149 17..1165 5745 100 Plus
CG11714-RC 1116 CG11714-PC 11..1113 63..1165 5515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 146..1294 17..1165 5745 100 Plus
CG11714-RA 1650 CG11714-RA 146..1294 17..1165 5745 100 Plus
Fuca-RC 3513 CG6128-RC 146..1294 17..1165 5745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11521369..11522507 1165..27 5695 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:31:39 has no hits.

BO11074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:41 Download gff for BO11074.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 1..1152 17..1169 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:35 Download gff for BO11074.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 141..1300 11..1172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:03 Download gff for BO11074.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 146..1294 17..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:41 Download gff for BO11074.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 141..1300 11..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:13 Download gff for BO11074.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RC 146..1294 17..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:13 Download gff for BO11074.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11521367..11522513 23..1167 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:03 Download gff for BO11074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11514467..11515613 23..1167 99   Minus

BO11074.pep Sequence

Translation from 16 to 1183

> BO11074.pep
MSIWPIRTLPNSKMRSCMMELGRTNRHTDCTFIIEDESGGSQSFPCHKLL
FSCASDVFDRMLYGDYIESTSGVVRLNDVQPDIFEKFRDYVYGYECDKLQ
KYDFDTLIRLCEFANKYLVQSLEEDCVKDLLIRKNTFDMGELLRLFQCAH
RMNRKSLINQIAWELKCTFKSTLDHSGVYEFNCEVFKHYIEVIASKISEA
DRFRLLEMYLKYNGIEELESAGQVDSQDATEANTTTITTTNEVENQESEL
PSTSCVPLKTECSFAVPNKKASFVSDLLALIDFGKLSPKEFYDGPGKSNF
LSLAEKYEHMYQIAKNCVTAKDELQLKMALTTEQKPPLPSESRRIVHMGG
SLMRDEPTASSVTSHYLSRPIRRYRAWSAHSDVASFLDH

BO11074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-PD 383 CG11714-PD 1..383 1..383 2015 100 Plus
CG11714-PA 383 CG11714-PA 1..383 1..383 2015 100 Plus
CG11714-PC 371 CG11714-PC 5..371 17..383 1930 100 Plus
CG43120-PA 286 CG43120-PA 30..250 43..316 246 24.5 Plus
CG17068-PA 694 CG17068-PA 22..228 24..231 157 28 Plus