Clone Sequence Records
BO11074.3prime Sequence
728 bp (727 high quality bases) assembled on 2006-04-19
> BO11074.3prime
ATGGTCTAGAAAGCTTGCGACGTCACTGTGTGCTGACCAGGCGCGATATC
GACGGATGGGTCGGGAAAGGTAATGCGAGGTAACCGAAGAAGCCGTTGGT
TCGTCGCGCATTAAGCTTCCTCCCATATGAACTATGCGTCGGGATTCGGA
AGGTAGGGGGGGCTTCTGTTCCGTGGTCAATGCCATCTTCAGCTGCAGTT
CATCTTTGGCCGTAACGCAGTTCTTGGCGATTTGATACATATGCTCGTAC
TTCTCAGCCAGGCTAAGGAAATTGGATTTGCCGGGTCCATCGTAGAATTC
CTTGGGCGAAAGTTTGCCAAAATCAATCAGTGCAAGTAGATCGCTGACAA
AACTTGCCTTCTTATTTGGAACGGCAAAACTGCATTCAGTTTTGAGCGGA
ACGCAGCTAGTGGACGGAAGTTCCGATTCTTGATTTTCCACTTCGTTGGT
GGTGGTGATGGTGGTGGTGTTGGCTTCAGTTGCATCCTGGCTATCCACTT
GCCCCGCGCTTTCCAATTCCTCGATACCATTATATTTTAGATACATTTCC
AGCAGACGGAAACGATCTGCCTCCGATATTTTGCTAGCAATCACTTCGAT
ATAGTGTTTAAATACCTCGCAATTGAATTCGTATACGCCAGAGTGGTCCA
AGGTGCTCTTGAAGGTGCACTTTAGCTCCCAGGCTATCTGATTTATTAAC
GACTTGCGATTCATGCGATGCGCACACT
BO11074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-PA | 1152 | CG11714-RA | 440..1149 | 728..19 | 3550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 585..1294 | 728..19 | 3550 | 100 | Minus |
CG11714-RC | 1614 | CG11714-RC | 549..1258 | 728..19 | 3550 | 100 | Minus |
CG11714-RA | 1650 | CG11714-RA | 585..1294 | 728..19 | 3550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11521369..11522078 | 19..728 | 3550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:31:24 has no hits.
BO11074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:27 Download gff for
BO11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-PA | 440..1152 | 15..728 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:40 Download gff for
BO11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-PA | 440..1152 | 15..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:45 Download gff for
BO11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 585..1300 | 12..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:38 Download gff for
BO11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 585..1300 | 12..728 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:38 Download gff for
BO11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11521363..11522078 | 12..728 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:45 Download gff for
BO11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11514463..11515178 | 12..728 | 99 | | Plus |
BO11074.5prime Sequence
916 bp (759 high quality bases) assembled on 2006-04-19
> BO11074.5prime
GAAGTTATCAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATT
CCAAAATGCGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACG
GATTGCACATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCC
CTGCCACAAATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGC
TCTATGGCGACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGAT
GTACAACCGGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGA
GTGCGATAAACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTG
AGTTTGCTAACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAG
GATTTGCTGATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCT
ATTCCAGTGTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAG
CCTGGGAGCTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTA
TACGAATTCAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAG
CAAAATATCGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAAT
ATAATGGTATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGAT
GCAACTGAAGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAA
TCAAGAATCGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTGAAT
GCAGTTTTGCCGTTCCAAATAAGAAGGCAAGTTTTGTCAGCGATCTACTT
GCACTGATTGATTTTGGCAAACTTTCGCCCAAGGAATTCTACGATGGACC
CGGCAAAACCATTTCC
BO11074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-PA | 1152 | CG11714-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 146..1046 | 17..916 | 4465 | 99.8 | Plus |
CG11714-RA | 1650 | CG11714-RA | 146..1046 | 17..916 | 4465 | 99.8 | Plus |
Fuca-RC | 3513 | CG6128-RC | 146..1046 | 17..916 | 4465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11521623..11522507 | 911..27 | 4410 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:37:21 has no hits.
BO11074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:27 Download gff for
BO11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:42 Download gff for
BO11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:39 Download gff for
BO11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 141..1046 | 11..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:08 Download gff for
BO11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RC | 141..1046 | 11..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:08 Download gff for
BO11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11521617..11522513 | 23..916 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:39 Download gff for
BO11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11514717..11515613 | 23..916 | 99 | | Minus |
BO11074.complete Sequence
1183 bp (1183 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631986
> BO11074.complete
GAAGTTATCAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATT
CCAAAATGCGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACG
GATTGCACATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCC
CTGCCACAAATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGC
TCTATGGCGACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGAT
GTACAACCGGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGA
GTGCGATAAACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTG
AGTTTGCTAACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAG
GATTTGCTGATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCT
ATTCCAGTGTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAG
CCTGGGAGCTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTA
TACGAATTCAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAG
CAAAATATCGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAAT
ATAATGGTATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGAT
GCAACTGAAGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAA
TCAAGAATCGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTGAAT
GCAGTTTTGCCGTTCCAAATAAGAAGGCAAGTTTTGTCAGCGATCTACTT
GCACTGATTGATTTTGGCAAACTTTCGCCCAAGGAATTCTACGATGGACC
CGGCAAATCCAATTTCCTTAGCCTGGCTGAGAAGTACGAGCATATGTATC
AAATCGCCAAGAACTGCGTTACGGCCAAAGATGAACTGCAGCTGAAGATG
GCATTGACCACGGAACAGAAGCCCCCCCTACCTTCCGAATCCCGACGCAT
AGTTCATATGGGAGGAAGCTTAATGCGCGACGAACCAACGGCTTCTTCGG
TTACCTCGCATTACCTTTCCCGACCCATCCGTCGATATCGCGCCTGGTCA
GCACACAGTGACGTCGCAAGCTTTCTAGACCAT
BO11074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 1152 | CG11714-PD | 1..1149 | 17..1165 | 5745 | 100 | Plus |
CG11714-RA | 1152 | CG11714-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
CG11714-RC | 1116 | CG11714-PC | 11..1113 | 63..1165 | 5515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 146..1294 | 17..1165 | 5745 | 100 | Plus |
CG11714-RA | 1650 | CG11714-RA | 146..1294 | 17..1165 | 5745 | 100 | Plus |
Fuca-RC | 3513 | CG6128-RC | 146..1294 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11521369..11522507 | 1165..27 | 5695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:31:39 has no hits.
BO11074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:41 Download gff for
BO11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 1..1152 | 17..1169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:35 Download gff for
BO11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 141..1300 | 11..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:03 Download gff for
BO11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 146..1294 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:41 Download gff for
BO11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 141..1300 | 11..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:13 Download gff for
BO11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RC | 146..1294 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:13 Download gff for
BO11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11521367..11522513 | 23..1167 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:03 Download gff for
BO11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11514467..11515613 | 23..1167 | 99 | | Minus |
BO11074.pep Sequence
Translation from 16 to 1183
> BO11074.pep
MSIWPIRTLPNSKMRSCMMELGRTNRHTDCTFIIEDESGGSQSFPCHKLL
FSCASDVFDRMLYGDYIESTSGVVRLNDVQPDIFEKFRDYVYGYECDKLQ
KYDFDTLIRLCEFANKYLVQSLEEDCVKDLLIRKNTFDMGELLRLFQCAH
RMNRKSLINQIAWELKCTFKSTLDHSGVYEFNCEVFKHYIEVIASKISEA
DRFRLLEMYLKYNGIEELESAGQVDSQDATEANTTTITTTNEVENQESEL
PSTSCVPLKTECSFAVPNKKASFVSDLLALIDFGKLSPKEFYDGPGKSNF
LSLAEKYEHMYQIAKNCVTAKDELQLKMALTTEQKPPLPSESRRIVHMGG
SLMRDEPTASSVTSHYLSRPIRRYRAWSAHSDVASFLDH
BO11074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-PD | 383 | CG11714-PD | 1..383 | 1..383 | 2015 | 100 | Plus |
CG11714-PA | 383 | CG11714-PA | 1..383 | 1..383 | 2015 | 100 | Plus |
CG11714-PC | 371 | CG11714-PC | 5..371 | 17..383 | 1930 | 100 | Plus |
CG43120-PA | 286 | CG43120-PA | 30..250 | 43..316 | 246 | 24.5 | Plus |
CG17068-PA | 694 | CG17068-PA | 22..228 | 24..231 | 157 | 28 | Plus |