Clone Sequence Records
BO11075.5prime Sequence
864 bp (744 high quality bases) assembled on 2006-04-19
> BO11075.5prime
GAAGTTATCAGTCGACATGGCACTACAAGGCTGGCGCTTTTTCGGTGTCT
CGGCAACCATCATCATCTACATCGGCGGCGTCCTGTTCCTCTCCATGAAC
AACATACCCGGATCGCATCCCAAAAGACCGCGCATCGAACGTTTCGCCGA
GTTTCCCAGCTTTCATAGTCCTCGGTTTCCGATGCCCAGCCGCAAGATGA
CGATACGCTGGTGTCGCGACCTCAAGTACATAAATCGAGATCTTCCAATC
TACGCGGATTACAAGTCCGACTTCTACACGGCCCTGCCCAGTGACGTCAG
TGCTGCCCTGCAATCGCTGCCAGCGTTGACCGCCCTGGCCAGTTTTCCTG
GCAGCGGTAACACGTGGCTAAGGTACTTGCTCCAGCAGGCCACCGGCATC
CTGACGGGCAGCATCTACAAGGACTACGGCCTGCTGAAGACCGGCTTTCC
GGCGGAGAACGTCTGCAACAGTTCAGTATTATTGGTGAAGACCCACGAGT
GGGGCAGCAAAGCGTGGGCGCCCTTCTCGAAAGCAATTCTTCTCGTCCGC
GATCCGGAGAAAGCGATCATCGCGGAGTTCAATCGCCAGAGTGGCGGTCA
CATCGGATTCGCATCACCGGATCGCTACAAGCGCACCAAGGGAAAATACT
GGCAGCAATTCGTGAGCAACAAGCTCAAGGGCTGGGAGATGATGAAACTC
AGCTGGGCGCGCAACTTCACGGGCAGCATCAAGGTGGTGTTCTACGACGA
CCTGGTCCACCATACGGAGCGGGAGCTGCGCTCCATTCTGGACTTCCTGC
AGTTCCCCATCAACGAGCAACTGATGCGGTGCGCCATTATGCGGAAGGAG
GGCATCTTCCGGCG
BO11075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-PC | 954 | CG9164-RC | 1..848 | 17..864 | 4215 | 99.8 | Plus |
CG9164-PA | 954 | CG9164-RA | 1..848 | 17..864 | 4215 | 99.8 | Plus |
CG9164-PB | 954 | CG9164-RB | 1..848 | 17..864 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-RD | 4420 | CG9164-RD | 2758..3609 | 13..864 | 4230 | 99.8 | Plus |
CG9164-RB | 1781 | CG9164-RB | 119..970 | 13..864 | 4230 | 99.8 | Plus |
CG9164-RC | 2476 | CG9164-RC | 546..1397 | 13..864 | 4230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15381802..15382170 | 647..279 | 1845 | 100 | Minus |
X | 23542271 | X | 15381450..15381666 | 864..648 | 1070 | 99.5 | Minus |
X | 23542271 | X | 15382546..15382684 | 151..13 | 680 | 99.3 | Minus |
X | 23542271 | X | 15382229..15382357 | 278..150 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:36:55 has no hits.
BO11075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:30 Download gff for
BO11075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-PC | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:45 Download gff for
BO11075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-PB | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:47:55 Download gff for
BO11075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 546..1397 | 13..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:06 Download gff for
BO11075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 546..1397 | 13..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:06 Download gff for
BO11075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15382546..15382684 | 13..151 | 99 | | Minus |
X | 15381450..15381666 | 648..864 | 99 | <- | Minus |
X | 15381802..15382170 | 279..647 | 100 | <- | Minus |
X | 15382229..15382355 | 152..278 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:47:55 Download gff for
BO11075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15275483..15275699 | 648..864 | 99 | <- | Minus |
arm_X | 15275835..15276203 | 279..647 | 100 | <- | Minus |
arm_X | 15276262..15276388 | 152..278 | 100 | <- | Minus |
arm_X | 15276579..15276717 | 13..151 | 99 | | Minus |
BO11075.3prime Sequence
737 bp (733 high quality bases) assembled on 2006-04-19
> BO11075.3prime
ATGGTCTAGAAAGCTTGCCGGCTCCTGACGCCCCAGCAATCCGTACACGA
TGCGCCGTCGATTCTGCACCTCCGCTCTCATGGATTCCGTATAGGGATCG
AAAGATAACAGACGTTTCTTCCGCCGGAAGATGCCCTCCTTCCGCATAAT
GGCGCACCGCATCAGTTGCTCGTTGATGGGGAACTGCAGGAAGTCCAGAA
TGGAGCGCAGCTCCCGCTCCGTATGGTGGACCAGGTCGTCGTAGAACACC
ACCTTGATGCTGCCCGTGAAGTTGCGCGCCCAGCTGAGGTTCATCATCTC
CCAGCCCTTGAGCTTGTTGCTCACGAATTGCTGCCAGTATTTTCCCTTGG
TGCGCTTGTAGCGATCCGGTGATGCGAATCCGATGTGACCGCCACTCTGG
CGATTGAACTCCGCGATGATCGCTTTCTCCGGATCGCGGACGAGAAGAAT
TGCTTTCGAGAAGGGCGCCCACGCTTTGCTGCCCCACTCGTGGGTCTTCA
CCAATAATACTGAACTGTTGCAGACGTTCTCCGCCGGAAAGCCGGTCTTC
AGCAGGCCGTAGTCCTTGTAGATGCTGCCCGTCAGGATGCCGGTGGCCTG
CTGGAGCAAGTACCTTAGCCACGTGTTACCGCTGCCAGGAAAACTGGCCA
GGGCGGTCAACGCTGGCAGCGATTGCAGGGCAGCACTGACGTCACTGGGC
AGGGCCGTGTAGAAGTCGGACTTGTAATCCGCGTAGA
BO11075.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-PC | 954 | CG9164-RC | 233..951 | 737..19 | 3595 | 100 | Minus |
CG9164-PA | 954 | CG9164-RA | 233..951 | 737..19 | 3595 | 100 | Minus |
CG9164-PB | 954 | CG9164-RB | 233..951 | 737..19 | 3595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-RD | 4420 | CG9164-RD | 2994..3712 | 737..19 | 3595 | 100 | Minus |
CG9164-RB | 1781 | CG9164-RB | 355..1073 | 737..19 | 3595 | 100 | Minus |
CG9164-RC | 2476 | CG9164-RC | 782..1500 | 737..19 | 3595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15381802..15382170 | 339..707 | 1845 | 100 | Plus |
X | 23542271 | X | 15381347..15381666 | 19..338 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:38:56 has no hits.
BO11075.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:28 Download gff for
BO11075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-PC | 234..954 | 18..736 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:44 Download gff for
BO11075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-PB | 234..954 | 18..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:28:56 Download gff for
BO11075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 783..1500 | 19..736 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:08 Download gff for
BO11075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 783..1500 | 19..736 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:08 Download gff for
BO11075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15381348..15381666 | 20..338 | 100 | <- | Plus |
X | 15381802..15382170 | 339..707 | 100 | <- | Plus |
X | 15382229..15382257 | 708..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:28:56 Download gff for
BO11075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15275381..15275699 | 20..338 | 100 | <- | Plus |
arm_X | 15275835..15276203 | 339..707 | 100 | <- | Plus |
arm_X | 15276262..15276290 | 708..736 | 100 | | Plus |
BO11075.complete Sequence
985 bp (985 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631987
> BO11075.complete
GAAGTTATCAGTCGACATGGCACTACAAGGCTGGCGCTTTTTCGGTGTCT
CGGCAACCATCATCATCTACATCGGCGGCGTCCTGTTCCTCTCCATGAAC
AACATACCCGGATCGCATCCCAAAAGACCGCGCATCGAACGTTTCGCCGA
GTTTCCCAGCTTTCATAGTCCTCGGTTTCCGATGCCCAGCCGCAAGATGA
CGATACGCTGGTGTCGCGACCTCAAGTACATAAATCGAGATCTTCCAATC
TACGCGGATTACAAGTCCGACTTCTACACGGCCCTGCCCAGTGACGTCAG
TGCTGCCCTGCAATCGCTGCCAGCGTTGACCGCCCTGGCCAGTTTTCCTG
GCAGCGGTAACACGTGGCTAAGGTACTTGCTCCAGCAGGCCACCGGCATC
CTGACGGGCAGCATCTACAAGGACTACGGCCTGCTGAAGACCGGCTTTCC
GGCGGAGAACGTCTGCAACAGTTCAGTATTATTGGTGAAGACCCACGAGT
GGGGCAGCAAAGCGTGGGCGCCCTTCTCGAAAGCAATTCTTCTCGTCCGC
GATCCGGAGAAAGCGATCATCGCGGAGTTCAATCGCCAGAGTGGCGGTCA
CATCGGATTCGCATCACCGGATCGCTACAAGCGCACCAAGGGAAAATACT
GGCAGCAATTCGTGAGCAACAAGCTCAAGGGCTGGGAGATGATGAACCTC
AGCTGGGCGCGCAACTTCACGGGCAGCATCAAGGTGGTGTTCTACGACGA
CCTGGTCCACCATACGGAGCGGGAGCTGCGCTCCATTCTGGACTTCCTGC
AGTTCCCCATCAACGAGCAACTGATGCGGTGCGCCATTATGCGGAAGGAG
GGCATCTTCCGGCGGAAGAAACGTCTGTTATCTTTCGATCCCTATACGGA
ATCCATGAGAGCGGAGGTGCAGAATCGACGGCGCATCGTGTACGGATTGC
TGGGGCGTCAGGAGCCGGCAAGCTTTCTAGACCAT
BO11075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-RD | 954 | CG9164-PD | 1..951 | 17..967 | 4755 | 100 | Plus |
CG9164-RB | 954 | CG9164-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
CG9164-RC | 954 | CG9164-PC | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-RD | 4420 | CG9164-RD | 2758..3712 | 13..967 | 4760 | 99.9 | Plus |
CG9164-RB | 1781 | CG9164-RB | 119..1073 | 13..967 | 4760 | 99.9 | Plus |
CG9164-RC | 2476 | CG9164-RC | 546..1500 | 13..967 | 4760 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15381802..15382170 | 647..279 | 1845 | 100 | Minus |
X | 23542271 | X | 15381347..15381666 | 967..648 | 1600 | 100 | Minus |
X | 23542271 | X | 15382546..15382684 | 151..13 | 680 | 99.3 | Minus |
X | 23542271 | X | 15382229..15382357 | 278..150 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:36 has no hits.
BO11075.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:17 Download gff for
BO11075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RB | 1..954 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:46 Download gff for
BO11075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RB | 119..1073 | 13..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:22 Download gff for
BO11075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 550..1500 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:18 Download gff for
BO11075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RB | 119..1073 | 13..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:51 Download gff for
BO11075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 550..1500 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:51 Download gff for
BO11075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15381345..15381666 | 648..969 | 99 | <- | Minus |
X | 15381802..15382170 | 279..647 | 100 | <- | Minus |
X | 15382229..15382355 | 152..278 | 100 | <- | Minus |
X | 15382546..15382680 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:22 Download gff for
BO11075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15275378..15275699 | 648..969 | 99 | <- | Minus |
arm_X | 15275835..15276203 | 279..647 | 100 | <- | Minus |
arm_X | 15276262..15276388 | 152..278 | 100 | <- | Minus |
arm_X | 15276579..15276713 | 17..151 | 100 | | Minus |
BO11075.pep Sequence
Translation from 16 to 985
> BO11075.pep
MALQGWRFFGVSATIIIYIGGVLFLSMNNIPGSHPKRPRIERFAEFPSFH
SPRFPMPSRKMTIRWCRDLKYINRDLPIYADYKSDFYTALPSDVSAALQS
LPALTALASFPGSGNTWLRYLLQQATGILTGSIYKDYGLLKTGFPAENVC
NSSVLLVKTHEWGSKAWAPFSKAILLVRDPEKAIIAEFNRQSGGHIGFAS
PDRYKRTKGKYWQQFVSNKLKGWEMMNLSWARNFTGSIKVVFYDDLVHHT
ERELRSILDFLQFPINEQLMRCAIMRKEGIFRRKKRLLSFDPYTESMRAE
VQNRRRIVYGLLGRQEPASFLDH
BO11075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-PD | 317 | CG9164-PD | 1..317 | 1..317 | 1679 | 100 | Plus |
CG9164-PB | 317 | CG9164-PB | 1..317 | 1..317 | 1679 | 100 | Plus |
CG9164-PC | 317 | CG9164-PC | 1..317 | 1..317 | 1679 | 100 | Plus |