Clone Sequence Records
BO11077.3prime Sequence
822 bp (821 high quality bases) assembled on 2006-04-19
> BO11077.3prime
ATGGTCTAGAAAGCTTGCAACCTCTTTGGCCAGCTTATGGACCTGGCGAT
AGTTGACGTCCACCAATCGTATACTGCCGCCCACCGTGGCCAGCGGTTTC
ATCAAGTTGTTCAGGGTGGTGGCCACCGGATCGAGGATGTCCCTGGCGGA
GCACAGTACATTGTATAGGAAAATCAGTGGTGGCTGCAGGTAGCCGTTGA
AGAGCATGGTCAGGAGGGGCTTGAGCAAGTAGTCGGAGGTCATGTGGAGC
AGTCCAACGATCAGGGTGTTCACCAGGGAGTAGAGGACAAATCGGTAGCT
CTGCAGAATGAAGGCTACCACGAAGGCCACGGCGATGTGCAGCAGTCCGA
AGAGCTCCGCCCAGAAGTGGGTGGCATAGGTGGTGGCGCGGTCGGCCAGG
ACAATAGCATTGATCTTCGGATGCGAGTCCGTGGTGCTCAGATAGTCGGC
GCAGCCATGCTCGAAGGGATAGATGCCGATGCAGGTGTGCCGGTTGGCCT
CCTTGCGATTCCACTGTGGCTCCGGCAGATCGTCGATGATGGAATTTCGG
CTCTGCGGCTGGCACTTGCACATCTTGTCCAGCGACTCCACTAAACGGGC
TAGAAAGCCACTCTTCTGCTTCTGCTTCTGCGCCTGCGATGATTTGTGGG
ACTTTGTGGCACGACCCTTCACTTTCGGCGCAGTTCTCGTTGGGACGAGC
ACACGGGGACGGCGCTTGGAGTAACGCTGGAACTCGATCCTTTGGGGCTT
GCTCTTGCTCANGCTAAGCTGACTCTTCCCCGGCTCAGCGTGCATCTCGT
ACAGAGTGTGTGGTGAGCTCCC
BO11077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-PA | 1023 | CG3698-RA | 217..1020 | 822..19 | 4001 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-RA | 1135 | CG3698-RA | 241..1044 | 822..19 | 4009 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20797332..20798135 | 19..822 | 4009 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:57:24 has no hits.
BO11077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:33 Download gff for
BO11077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-PA | 217..1023 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:50 Download gff for
BO11077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-PA | 217..1023 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:31:00 Download gff for
BO11077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 241..1052 | 9..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:56 Download gff for
BO11077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 241..1052 | 9..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:56 Download gff for
BO11077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20797324..20798135 | 9..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:31:00 Download gff for
BO11077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20790424..20791235 | 9..822 | 99 | | Plus |
BO11077.5prime Sequence
905 bp (738 high quality bases) assembled on 2006-04-19
> BO11077.5prime
GAAGTTATCAGTCGACATGTCGGAATCAACCGATCCCCATTGCGCCACCT
CCAAGTCCAACCTGATCAAGGTGAACCACGTGGGGGTGACGGCCAAGCTG
CAGTCTCCCCTGAAGAAGATCTTCCCACGGCTGAACTCCTCCAGCGATTC
CGACGCATATCAGCACAGTCAGACGCAGTACAACATGTTCAAGGATGTGG
CGCACGGGGAAATGACCGCGTCCACGGATTCGGGGAGCTCACCACACACT
CTGTACGAGATGCACGCTGAGCCGGGGAAGAGTCAGCTTAGCCTGAGCAA
GAGCAAGCCCCAAAGGATCGAGTTCCAGCGTTACTCCAAGCGCCGTCCCC
GTGTGCTCGTCCCAACGAGAACTGCGCCGAAAGTGAAGGGTCGTGCCACA
AAGTCCCACAAATCATCGCAGGCGCAGAAGCAGAAGCAGAAGAGTGGCTT
TCTAGCCCGTTTAGTGGAGTCGCTGGACAAGATGTGCAAGTGCCAGCCGC
AGAGCCGAAATTCCATCATCGACGATCTGCCGGAGCCACAGTGGAATCGC
AAGGAGGCCAACCGGCACACCTGCATCGGCATCTATCCCTTCGAGCATGG
CTGCGCCGACTATCTGAGCACCACGGACTCGCATCCGAAGATCAATGCTA
TTGTCCTGGCCGACCGCGCCACCACCTATGCCACCCACTTCTGGGCGGAG
CTCTTCGGACTGCTGCACATCGCCGTGGCCTTCGTGGTAGCCTTCATTCT
GCAGAGCTACCGATTTGTCCTCTACTCCCTGGTGAACACCCTGATCGTTG
GACTGCTCCACATGACCTCCGACTACTTGCTCAAGCCCCTCCTGACCATG
CTCTTCAACGGCTACCTGCAGCCACCACTGATTTTCCTATACAATGTACT
GTGCT
BO11077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-PA | 1023 | CG3698-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-RA | 1135 | CG3698-RA | 25..913 | 17..905 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20797463..20798351 | 905..17 | 4445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:34:52 has no hits.
BO11077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:35 Download gff for
BO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:51 Download gff for
BO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:33 Download gff for
BO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 15..913 | 6..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:20:43 Download gff for
BO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 15..913 | 6..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:20:43 Download gff for
BO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20797463..20798361 | 6..905 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:33 Download gff for
BO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20790563..20791461 | 6..905 | 99 | | Minus |
BO11077.complete Sequence
1054 bp (1054 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631988
> BO11077.complete
GAAGTTATCAGTCGACATGTCGGAATCAACCGATCCCCATTGCGCCACCT
CCAAGTCCAACCTGATCAAGGTGAACCACGTGGGGGTGACGGCCAAGCTG
CAGTCTCCCCTGAAGAAGATCTTCCCACGGCTGAACTCCTCCAGCGATTC
CGACGCATATCAGCACAGTCAGACGCAGTACAACATGTTCAAGGATGTGG
CGCACGGGGAAATGACCGCGTCCACGGATTCGGGGAGCTCACCACACACT
CTGTACGAGATGCACGCTGAGCCGGGGAAGAGTCAGCTTAGCCTGAGCAA
GAGCAAGCCCCAAAGGATCGAGTTCCAGCGTTACTCCAAGCGCCGTCCCC
GTGTGCTCGTCCCAACGAGAACTGCGCCGAAAGTGAAGGGTCGTGCCACA
AAGTCCCACAAATCATCGCAGGCGCAGAAGCAGAAGCAGAAGAGTGGCTT
TCTAGCCCGTTTAGTGGAGTCGCTGGACAAGATGTGCAAGTGCCAGCCGC
AGAGCCGAAATTCCATCATCGACGATCTGCCGGAGCCACAGTGGAATCGC
AAGGAGGCCAACCGGCACACCTGCATCGGCATCTATCCCTTCGAGCATGG
CTGCGCCGACTATCTGAGCACCACGGACTCGCATCCGAAGATCAATGCTA
TTGTCCTGGCCGACCGCGCCACCACCTATGCCACCCACTTCTGGGCGGAG
CTCTTCGGACTGCTGCACATCGCCGTGGCCTTCGTGGTAGCCTTCATTCT
GCAGAGCTACCGATTTGTCCTCTACTCCCTGGTGAACACCCTGATCGTTG
GACTGCTCCACATGACCTCCGACTACTTGCTCAAGCCCCTCCTGACCATG
CTCTTCAACGGCTACCTGCAGCCACCACTGATTTTCCTATACAATGTACT
GTGCTCCGCCAGGGACATCCTCGATCCGGTGGCCACCACCCTGAACAACT
TGATGAAACCGCTGGCCACGGTGGGCGGCAGTATACGATTGGTGGACGTC
AACTATCGCCAGGTCCATAAGCTGGCCAAAGAGGTTGCAAGCTTTCTAGA
CCAT
BO11077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-RA | 1023 | CG3698-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-RA | 1135 | CG3698-RA | 25..1044 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20797332..20798351 | 1036..17 | 5100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:32:39 has no hits.
BO11077.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:42 Download gff for
BO11077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 1..1023 | 17..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:37 Download gff for
BO11077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 15..1052 | 6..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:57 Download gff for
BO11077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 25..1044 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:42 Download gff for
BO11077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 15..1052 | 6..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:28 Download gff for
BO11077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 25..1044 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:28 Download gff for
BO11077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20797329..20798351 | 17..1038 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:57 Download gff for
BO11077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20790429..20791451 | 17..1038 | 99 | | Minus |
BO11077.pep Sequence
Translation from 16 to 1054
> BO11077.pep
MSESTDPHCATSKSNLIKVNHVGVTAKLQSPLKKIFPRLNSSSDSDAYQH
SQTQYNMFKDVAHGEMTASTDSGSSPHTLYEMHAEPGKSQLSLSKSKPQR
IEFQRYSKRRPRVLVPTRTAPKVKGRATKSHKSSQAQKQKQKSGFLARLV
ESLDKMCKCQPQSRNSIIDDLPEPQWNRKEANRHTCIGIYPFEHGCADYL
STTDSHPKINAIVLADRATTYATHFWAELFGLLHIAVAFVVAFILQSYRF
VLYSLVNTLIVGLLHMTSDYLLKPLLTMLFNGYLQPPLIFLYNVLCSARD
ILDPVATTLNNLMKPLATVGGSIRLVDVNYRQVHKLAKEVASFLDH
BO11077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-PA | 340 | CG3698-PA | 1..340 | 1..340 | 1764 | 100 | Plus |
