Clone Sequence Records
BO11079.3prime Sequence
839 bp (714 high quality bases) assembled on 2006-04-19
> BO11079.3prime
ATGGTCTAGAAAGCTTGCGGATAAGCCGCTACCATGACTATTCCATTGCA
CTTCTGAGATGGAGGGCAGAGCCTGATGCTGCTGCTGTTGTTGTTGCAAG
CCACCGCCGGCTGCCGGCGATCCCGCATTGTTGCTGTTATTATTGTTGCT
AATGCTAGTGATGTTATTATTGTTATTGTTCTGTCGCGCTCGCATCACAT
CCTCGGCCTGTGTATTGCAGTGCGGCCGAGGACCTGGTTCAGGTGTATAC
GTGAAGGTCAGACCGGTGGCATAAATTATTCCATCGTTGCGCACCAGCGA
AATGGGCACCTGCGTGGGCTGACGTACCCAAAGCCATTCGCCTCGAAATT
GTGAAATCTCCGGCACCACGCATAGCAATGTCTCTGTGCAGCGGTACATG
GTTTCCGCCTCCACATCGCCAAACCACACCTGCAGATGCGGCGTAAAGTT
GTCGCCACTCAGCTCTAGCATGGCCACATCCCCGCCGCCATTGAGATTAA
GGGAATTAACGATTGGCACTGGAGTGACTGGAGAAGCCACAGGACCCATG
CCCTCGTAGAACTGGTACTCAGCCTTGTCGGTGGATATGATGGTCCAGCA
GGCGCCGTCATTGATCATCTCCTTGTTCGGCTCCTTGGGGCACGGCGTGG
CCTGGAACTGTATGATTTTCTCCTGCGACAAACAGAGATACATCCGATCC
GTATCCTTCATGTAGAAGGCGCATTTGTGCAGCTGAGAAACGGGATCGTC
GGCTTCCAGCAGGGCCATCTGCTTGTCTACCTTCGGGATGATCAGACGTG
GCAGGGCCATGCCCGTTACGGAGCACACCAGTTTGACTG
BO11079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3497-PA | 1785 | Su(H)-RA | 962..1782 | 839..19 | 4080 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(H)-RC | 2633 | CG3497-RC | 1411..2231 | 839..19 | 4090 | 99.9 | Minus |
Su(H)-RA | 2950 | CG3497-RA | 1411..2231 | 839..19 | 4090 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15042306..15042615 | 328..19 | 1550 | 100 | Minus |
2L | 23513712 | 2L | 15041672..15041975 | 839..536 | 1505 | 99.7 | Minus |
2L | 23513712 | 2L | 15042034..15042244 | 535..325 | 1055 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 17:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6823 | 174..73 | 165 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6847 | 187..73 | 161 | 64.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2465 | 187..73 | 158 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6883 | 193..73 | 153 | 62.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2441 | 187..73 | 152 | 63.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6811 | 168..73 | 151 | 65.7 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3178..3308 | 199..73 | 139 | 60.3 | Minus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2820..2903 | 208..127 | 136 | 65.9 | Minus |
Stalker | 7256 | Stalker STALKER 7256bp | 2714..2797 | 208..127 | 136 | 65.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6790 | 148..73 | 132 | 68.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2770..2839 | 138..71 | 128 | 70.4 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2636..2686 | 179..126 | 128 | 74.1 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7145..7188 | 94..51 | 121 | 75 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 8598..8641 | 94..51 | 121 | 75 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 17..69 | 179..127 | 121 | 69.8 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7055..7107 | 179..127 | 121 | 69.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2360 | 97..73 | 116 | 96 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6895 | 182..128 | 113 | 67.3 | Minus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1991..2041 | 184..134 | 111 | 68.6 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 26..81 | 182..127 | 109 | 66.1 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7064..7119 | 182..127 | 109 | 66.1 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 541..576 | 98..63 | 108 | 77.8 | Minus |
BO11079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:39 Download gff for
BO11079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-PA | 962..1785 | 16..839 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:55 Download gff for
BO11079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3497-PA | 962..1785 | 16..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:42:21 Download gff for
BO11079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 1411..2231 | 19..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:53:57 Download gff for
BO11079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 1411..2231 | 19..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:53:57 Download gff for
BO11079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15041672..15041975 | 536..839 | 99 | -> | Minus |
2L | 15042034..15042241 | 328..535 | 100 | -> | Minus |
2L | 15042307..15042615 | 19..327 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:21 Download gff for
BO11079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15041672..15041975 | 536..839 | 99 | -> | Minus |
arm_2L | 15042034..15042241 | 328..535 | 100 | -> | Minus |
arm_2L | 15042307..15042615 | 19..327 | 100 | | Minus |
BO11079.5prime Sequence
813 bp (786 high quality bases) assembled on 2006-04-19
> BO11079.5prime
GAAGTTATCAGTCGACATGAAGAGCTACAGCCAATTTAATTTAAACGCCG
CCGCCCCGCCCGCCATTGCCTACGAAACTACGGTTGTAAATCCCAACGGC
TCACCCCTCGATCCTCACCAGCAGCAGCAACAACAGAGCCAGGATATGCC
GCACTTTGGACTGCCCGGTCCGCAGCCGCCGTCGTCGCAGCAGCAGCAAC
AACAATTGCAAGTGCACCACCAACAGCAGCAGCAGCAGCAACAACAACAA
CAACAACAGCAGCATCAACAACAAATGCAGATGTCCTTGCTGCCGGGTCC
TTACCGGCCACACATCGAGGAGAAGAAGCTCACGCGGGACGCCATGGAGA
AGTACATGCGCGAGCGCAACGACATGGTCATCGTTATCCTGCACGCCAAG
GTGGCCCAAAAGTCCTATGGCAATGAGAAGCGATTCTTTTGCCCACCGCC
GTGCATTTATCTGTTCGGAAGTGGCTGGCGCCGGCGGTACGAGGAGATGT
TGCAGCAGGGCGAGGGCGAACAGGGAGCACAACTATGCGCGTTCATCGGT
ATCGGGAGCAGTGACCAGGATATGCAGCAGCTGGATCTCAATGGCAAGCA
GTACTGTGCGGCCAAGACGCTCTTCATCTCGGACTCGGACAAGCGAAAAC
ACTTTATGCTGTCGGTGAAGATGTTTTACGGAAACGGTCATGACATTGGC
GTTTTTAACTCGAAACGGATCAAGGTTATATCCAAGCCGTCCAAAAAGAA
ACAGTCGCTAAAGAATGCCGATCTGTGCATAGCCAGCGGCACCAATGTAG
CCCCTGTCAATCG
BO11079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3497-PA | 1785 | Su(H)-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(H)-RC | 2633 | CG3497-RC | 450..1246 | 17..813 | 3940 | 99.7 | Plus |
Su(H)-RA | 2950 | CG3497-RA | 450..1246 | 17..813 | 3940 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15041093..15041507 | 399..813 | 2030 | 99.3 | Plus |
2L | 23513712 | 2L | 15039937..15040322 | 17..402 | 1930 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 04:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6898 | 116..280 | 332 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2546 | 116..274 | 306 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6921 | 116..273 | 303 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2485 | 116..282 | 299 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2507 | 116..280 | 285 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6879 | 120..279 | 261 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6949 | 116..276 | 224 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2511..2665 | 116..261 | 214 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2832..2999 | 107..262 | 209 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2957 | 119..274 | 188 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6951 | 116..273 | 187 | 61.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1153 | 106..205 | 167 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6956 | 116..239 | 150 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..7028 | 116..272 | 148 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6905..7061 | 119..275 | 137 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2449..2633 | 111..283 | 134 | 55.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1588 | 111..150 | 119 | 77.5 | Plus |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3988..4068 | 131..50 | 118 | 65.1 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7422..7450 | 116..144 | 109 | 86.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8874..8902 | 116..144 | 109 | 86.2 | Plus |
BO11079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:40 Download gff for
BO11079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-PA | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:57 Download gff for
BO11079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3497-PA | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:02:58 Download gff for
BO11079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 445..1246 | 9..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:37:30 Download gff for
BO11079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 445..1246 | 9..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:37:30 Download gff for
BO11079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15039932..15040320 | 9..400 | 98 | -> | Plus |
2L | 15041095..15041507 | 401..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:02:58 Download gff for
BO11079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15039932..15040320 | 9..400 | 98 | -> | Plus |
arm_2L | 15041095..15041507 | 401..813 | 99 | | Plus |
BO11079.complete Sequence
1816 bp (1816 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631989
> BO11079.complete
GAAGTTATCAGTCGACATGAAGAGCTACAGCCAATTTAATTTAAACGCCG
CCGCCCCGCCCGCCATTGCCTACGAAACTACGGTTGTAAATCCCAACGGC
TCACCCCTCGATCCTCACCAGCAGCAGCAACAACAGAGCCAGGATATGCC
GCACTTTGGACTGCCCGGTCCGCAGCCGCCGTCGTCGCAGCAGCAGCAAC
AACAATTGCAAGTGCACCACCAACAGCAGCAGCAGCAGCAACAACAACAA
CAACAACAGCAGCATCAACAACAAATGCAGATGTCCTTGCTGCCGGGTCC
TTACCGGCCACACATCGAGGAGAAGAAGCTCACGCGGGACGCCATGGAGA
AGTACATGCGCGAGCGCAACGACATGGTCATCGTTATCCTGCACGCCAAG
GTGGCCCAAAAGTCCTATGGCAATGAGAAGCGATTCTTTTGCCCACCGCC
GTGCATTTATCTGTTCGGAAGTGGCTGGCGCCGGCGGTACGAGGAGATGT
TGCAGCAGGGCGAGGGCGAACAGGGAGCACAACTATGCGCGTTCATCGGT
ATCGGGAGCAGTGACCAGGATATGCAGCAGCTGGATCTCAATGGCAAGCA
GTACTGTGCGGCCAAGACGCTCTTCATCTCGGACTCGGACAAGCGAAAAC
ACTTTATGCTGTCGGTGAAGATGTTTTACGGAAACGGTCATGACATTGGC
GTTTTTAACTCGAAACGGATCAAGGTTATATCCAAGCCGTCCAAAAAGAA
ACAGTCGCTAAAGAATGCCGATCTGTGCATAGCCAGCGGCACCAATGTAG
CCCTGTTCAATCGCCTGCGTTCCCAGACTGTCTCCACCCGTTACCTTCAC
GTGGAGAACGGACACTTTCATGCGTCGTCAACACAATGGGGAGCTTTTAC
GATACACCTGCTGGATGACAATGAGTCCGAGTCGGAGGAGTTTCAGGTGC
GCGATGGTTACATTCATTACGGAGCCACAGTCAAACTGGTGTGCTCCGTA
ACGGGCATGGCCCTGCCACGTCTGATCATCCGGAAGGTAGACAAGCAGAT
GGCCCTGCTGGAAGCCGACGATCCCGTTTCTCAGCTGCACAAATGCGCCT
TCTACATGAAGGATACGGATCGGATGTATCTCTGTTTGTCGCAGGAGAAA
ATCATACAGTTCCAGGCCACGCCGTGCCCCAAGGAGCCGAACAAGGAGAT
GATCAATGACGGCGCCTGCTGGACCATCATATCCACCGACAAGGCTGAGT
ACCAGTTCTACGAGGGCATGGGTCCTGTGGCTTCTCCAGTCACTCCAGTG
CCAATCGTTAATTCCCTTAATCTCAATGGCGGCGGGGATGTGGCCATGCT
AGAGCTGAGTGGCGACAACTTTACGCCGCATCTGCAGGTGTGGTTTGGCG
ATGTGGAGGCGGAAACCATGTACCGCTGCACAGAGACATTGCTATGCGTG
GTGCCGGAGATTTCACAATTTCGAGGCGAATGGCTTTGGGTACGTCAGCC
CACGCAGGTGCCCATTTCGCTGGTGCGCAACGATGGAATAATTTATGCCA
CCGGTCTGACCTTCACGTATACACCTGAACCAGGTCCTCGGCCGCACTGC
AATACACAGGCCGAGGATGTGATGCGAGCGCGACAGAACAATAACAATAA
TAACATCACTAGCATTAGCAACAATAATAACAGCAACAATGCGGGATCGC
CGGCAGCCGGCGGTGGCTTGCAACAACAACAGCAGCAGCATCAGGCTCTG
CCCTCCATCTCAGAAGTGCAATGGAATAGTCATGGTAGCGGCTTATCCGC
AAGCTTTCTAGACCAT
BO11079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(H)-RC | 1785 | CG3497-PC | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Su(H)-RA | 1785 | CG3497-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(H)-RC | 2633 | CG3497-RC | 450..2231 | 17..1798 | 8910 | 100 | Plus |
Su(H)-RA | 2950 | CG3497-RA | 450..2231 | 17..1798 | 8910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15041093..15041975 | 399..1281 | 4415 | 100 | Plus |
2L | 23513712 | 2L | 15039937..15040322 | 17..402 | 1930 | 100 | Plus |
2L | 23513712 | 2L | 15042306..15042615 | 1489..1798 | 1550 | 100 | Plus |
2L | 23513712 | 2L | 15042034..15042244 | 1282..1492 | 1055 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6898 | 116..280 | 332 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2546 | 116..274 | 306 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6921 | 116..273 | 303 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2485 | 116..282 | 299 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2507 | 116..280 | 285 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6879 | 120..279 | 261 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6949 | 116..276 | 224 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2832..2999 | 107..262 | 209 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2957 | 119..274 | 188 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6951 | 116..273 | 187 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6858 | 1631..1743 | 182 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1153 | 106..205 | 167 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2465 | 1630..1744 | 158 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6883 | 1624..1744 | 153 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2441 | 1630..1744 | 152 | 63.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6956 | 116..239 | 150 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..7028 | 116..272 | 148 | 58.6 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2820..2903 | 1609..1690 | 136 | 65.9 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 2714..2797 | 1609..1690 | 136 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2770..2839 | 1679..1746 | 128 | 70.4 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2636..2686 | 1638..1691 | 128 | 74.1 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7145..7188 | 1723..1766 | 121 | 75 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8598..8641 | 1723..1766 | 121 | 75 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 17..69 | 1638..1690 | 121 | 69.8 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7055..7107 | 1638..1690 | 121 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1588 | 111..150 | 119 | 77.5 | Plus |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3988..4068 | 131..50 | 118 | 65.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2360 | 1720..1744 | 116 | 96 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6895 | 1635..1689 | 113 | 67.3 | Plus |
BO11079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:31 Download gff for
BO11079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 1..1785 | 17..1801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:20 Download gff for
BO11079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 437..2223 | 9..1798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:05 Download gff for
BO11079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 450..2231 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:31 Download gff for
BO11079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 437..2223 | 9..1798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:13 Download gff for
BO11079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(H)-RA | 450..2231 | 17..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:13 Download gff for
BO11079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15042034..15042241 | 1282..1489 | 100 | -> | Plus |
2L | 15039937..15040320 | 17..400 | 100 | -> | Plus |
2L | 15041095..15041975 | 401..1281 | 100 | -> | Plus |
2L | 15042307..15042615 | 1490..1800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:05 Download gff for
BO11079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15039937..15040320 | 17..400 | 100 | -> | Plus |
arm_2L | 15041095..15041975 | 401..1281 | 100 | -> | Plus |
arm_2L | 15042034..15042241 | 1282..1489 | 100 | -> | Plus |
arm_2L | 15042307..15042615 | 1490..1800 | 99 | | Plus |
BO11079.pep Sequence
Translation from 16 to 1816
> BO11079.pep
MKSYSQFNLNAAAPPAIAYETTVVNPNGSPLDPHQQQQQQSQDMPHFGLP
GPQPPSSQQQQQQLQVHHQQQQQQQQQQQQQQHQQQMQMSLLPGPYRPHI
EEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLF
GSGWRRRYEEMLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLNGKQYCAAK
TLFISDSDKRKHFMLSVKMFYGNGHDIGVFNSKRIKVISKPSKKKQSLKN
ADLCIASGTNVALFNRLRSQTVSTRYLHVENGHFHASSTQWGAFTIHLLD
DNESESEEFQVRDGYIHYGATVKLVCSVTGMALPRLIIRKVDKQMALLEA
DDPVSQLHKCAFYMKDTDRMYLCLSQEKIIQFQATPCPKEPNKEMINDGA
CWTIISTDKAEYQFYEGMGPVASPVTPVPIVNSLNLNGGGDVAMLELSGD
NFTPHLQVWFGDVEAETMYRCTETLLCVVPEISQFRGEWLWVRQPTQVPI
SLVRNDGIIYATGLTFTYTPEPGPRPHCNTQAEDVMRARQNNNNNNITSI
SNNNNSNNAGSPAAGGGLQQQQQQHQALPSISEVQWNSHGSGLSASFLDH
BO11079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(H)-PC | 594 | CG3497-PC | 1..594 | 1..594 | 3171 | 100 | Plus |
Su(H)-PA | 594 | CG3497-PA | 1..594 | 1..594 | 3171 | 100 | Plus |
Sp1-PB | 520 | CG1343-PB | 413..472 | 23..88 | 159 | 54.5 | Plus |
Sp1-PD | 715 | CG1343-PD | 608..667 | 23..88 | 159 | 54.5 | Plus |
Sp1-PE | 720 | CG1343-PE | 613..672 | 23..88 | 159 | 54.5 | Plus |