Clone BO11079 Report

Search the DGRC for BO11079

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptSu(H)-RA
Protein status:BO11079.pep: validated full length
Sequenced Size:1816

Clone Sequence Records

BO11079.3prime Sequence

839 bp (714 high quality bases) assembled on 2006-04-19

> BO11079.3prime
ATGGTCTAGAAAGCTTGCGGATAAGCCGCTACCATGACTATTCCATTGCA
CTTCTGAGATGGAGGGCAGAGCCTGATGCTGCTGCTGTTGTTGTTGCAAG
CCACCGCCGGCTGCCGGCGATCCCGCATTGTTGCTGTTATTATTGTTGCT
AATGCTAGTGATGTTATTATTGTTATTGTTCTGTCGCGCTCGCATCACAT
CCTCGGCCTGTGTATTGCAGTGCGGCCGAGGACCTGGTTCAGGTGTATAC
GTGAAGGTCAGACCGGTGGCATAAATTATTCCATCGTTGCGCACCAGCGA
AATGGGCACCTGCGTGGGCTGACGTACCCAAAGCCATTCGCCTCGAAATT
GTGAAATCTCCGGCACCACGCATAGCAATGTCTCTGTGCAGCGGTACATG
GTTTCCGCCTCCACATCGCCAAACCACACCTGCAGATGCGGCGTAAAGTT
GTCGCCACTCAGCTCTAGCATGGCCACATCCCCGCCGCCATTGAGATTAA
GGGAATTAACGATTGGCACTGGAGTGACTGGAGAAGCCACAGGACCCATG
CCCTCGTAGAACTGGTACTCAGCCTTGTCGGTGGATATGATGGTCCAGCA
GGCGCCGTCATTGATCATCTCCTTGTTCGGCTCCTTGGGGCACGGCGTGG
CCTGGAACTGTATGATTTTCTCCTGCGACAAACAGAGATACATCCGATCC
GTATCCTTCATGTAGAAGGCGCATTTGTGCAGCTGAGAAACGGGATCGTC
GGCTTCCAGCAGGGCCATCTGCTTGTCTACCTTCGGGATGATCAGACGTG
GCAGGGCCATGCCCGTTACGGAGCACACCAGTTTGACTG

BO11079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3497-PA 1785 Su(H)-RA 962..1782 839..19 4080 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Su(H)-RC 2633 CG3497-RC 1411..2231 839..19 4090 99.9 Minus
Su(H)-RA 2950 CG3497-RA 1411..2231 839..19 4090 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15042306..15042615 328..19 1550 100 Minus
2L 23513712 2L 15041672..15041975 839..536 1505 99.7 Minus
2L 23513712 2L 15042034..15042244 535..325 1055 100 Minus
Blast to na_te.dros performed 2015-01-31 17:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6823 174..73 165 66.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6847 187..73 161 64.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2465 187..73 158 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6883 193..73 153 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2441 187..73 152 63.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6811 168..73 151 65.7 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3178..3308 199..73 139 60.3 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 2820..2903 208..127 136 65.9 Minus
Stalker 7256 Stalker STALKER 7256bp 2714..2797 208..127 136 65.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6790 148..73 132 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2770..2839 138..71 128 70.4 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2636..2686 179..126 128 74.1 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7145..7188 94..51 121 75 Minus
TART-C 11124 TART-C TARTC 11124bp 8598..8641 94..51 121 75 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 17..69 179..127 121 69.8 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7055..7107 179..127 121 69.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2360 97..73 116 96 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6895 182..128 113 67.3 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 1991..2041 184..134 111 68.6 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 26..81 182..127 109 66.1 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7064..7119 182..127 109 66.1 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 541..576 98..63 108 77.8 Minus

BO11079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:39 Download gff for BO11079.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(H)-PA 962..1785 16..839 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:55 Download gff for BO11079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3497-PA 962..1785 16..839 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:42:21 Download gff for BO11079.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 1411..2231 19..839 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:53:57 Download gff for BO11079.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 1411..2231 19..839 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:53:57 Download gff for BO11079.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15041672..15041975 536..839 99 -> Minus
2L 15042034..15042241 328..535 100 -> Minus
2L 15042307..15042615 19..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:21 Download gff for BO11079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15041672..15041975 536..839 99 -> Minus
arm_2L 15042034..15042241 328..535 100 -> Minus
arm_2L 15042307..15042615 19..327 100   Minus

BO11079.5prime Sequence

813 bp (786 high quality bases) assembled on 2006-04-19

> BO11079.5prime
GAAGTTATCAGTCGACATGAAGAGCTACAGCCAATTTAATTTAAACGCCG
CCGCCCCGCCCGCCATTGCCTACGAAACTACGGTTGTAAATCCCAACGGC
TCACCCCTCGATCCTCACCAGCAGCAGCAACAACAGAGCCAGGATATGCC
GCACTTTGGACTGCCCGGTCCGCAGCCGCCGTCGTCGCAGCAGCAGCAAC
AACAATTGCAAGTGCACCACCAACAGCAGCAGCAGCAGCAACAACAACAA
CAACAACAGCAGCATCAACAACAAATGCAGATGTCCTTGCTGCCGGGTCC
TTACCGGCCACACATCGAGGAGAAGAAGCTCACGCGGGACGCCATGGAGA
AGTACATGCGCGAGCGCAACGACATGGTCATCGTTATCCTGCACGCCAAG
GTGGCCCAAAAGTCCTATGGCAATGAGAAGCGATTCTTTTGCCCACCGCC
GTGCATTTATCTGTTCGGAAGTGGCTGGCGCCGGCGGTACGAGGAGATGT
TGCAGCAGGGCGAGGGCGAACAGGGAGCACAACTATGCGCGTTCATCGGT
ATCGGGAGCAGTGACCAGGATATGCAGCAGCTGGATCTCAATGGCAAGCA
GTACTGTGCGGCCAAGACGCTCTTCATCTCGGACTCGGACAAGCGAAAAC
ACTTTATGCTGTCGGTGAAGATGTTTTACGGAAACGGTCATGACATTGGC
GTTTTTAACTCGAAACGGATCAAGGTTATATCCAAGCCGTCCAAAAAGAA
ACAGTCGCTAAAGAATGCCGATCTGTGCATAGCCAGCGGCACCAATGTAG
CCCCTGTCAATCG

BO11079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3497-PA 1785 Su(H)-RA 1..787 17..803 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Su(H)-RC 2633 CG3497-RC 450..1246 17..813 3940 99.7 Plus
Su(H)-RA 2950 CG3497-RA 450..1246 17..813 3940 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15041093..15041507 399..813 2030 99.3 Plus
2L 23513712 2L 15039937..15040322 17..402 1930 100 Plus
Blast to na_te.dros performed 2015-02-04 04:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6898 116..280 332 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2382..2546 116..274 306 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6921 116..273 303 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2485 116..282 299 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2507 116..280 285 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6879 120..279 261 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6949 116..276 224 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2511..2665 116..261 214 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2832..2999 107..262 209 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2957 119..274 188 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6951 116..273 187 61.4 Plus
roo 9092 roo DM_ROO 9092bp 1054..1153 106..205 167 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6827..6956 116..239 150 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6878..7028 116..272 148 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6905..7061 119..275 137 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2449..2633 111..283 134 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1549..1588 111..150 119 77.5 Plus
gypsy8 4955 gypsy8 GYPSY8 4955bp 3988..4068 131..50 118 65.1 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7422..7450 116..144 109 86.2 Plus
TART-C 11124 TART-C TARTC 11124bp 8874..8902 116..144 109 86.2 Plus

BO11079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:40 Download gff for BO11079.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(H)-PA 1..797 17..813 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:17:57 Download gff for BO11079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3497-PA 1..797 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:02:58 Download gff for BO11079.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 445..1246 9..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:37:30 Download gff for BO11079.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 445..1246 9..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:37:30 Download gff for BO11079.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15039932..15040320 9..400 98 -> Plus
2L 15041095..15041507 401..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:02:58 Download gff for BO11079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15039932..15040320 9..400 98 -> Plus
arm_2L 15041095..15041507 401..813 99   Plus

BO11079.complete Sequence

1816 bp (1816 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631989

> BO11079.complete
GAAGTTATCAGTCGACATGAAGAGCTACAGCCAATTTAATTTAAACGCCG
CCGCCCCGCCCGCCATTGCCTACGAAACTACGGTTGTAAATCCCAACGGC
TCACCCCTCGATCCTCACCAGCAGCAGCAACAACAGAGCCAGGATATGCC
GCACTTTGGACTGCCCGGTCCGCAGCCGCCGTCGTCGCAGCAGCAGCAAC
AACAATTGCAAGTGCACCACCAACAGCAGCAGCAGCAGCAACAACAACAA
CAACAACAGCAGCATCAACAACAAATGCAGATGTCCTTGCTGCCGGGTCC
TTACCGGCCACACATCGAGGAGAAGAAGCTCACGCGGGACGCCATGGAGA
AGTACATGCGCGAGCGCAACGACATGGTCATCGTTATCCTGCACGCCAAG
GTGGCCCAAAAGTCCTATGGCAATGAGAAGCGATTCTTTTGCCCACCGCC
GTGCATTTATCTGTTCGGAAGTGGCTGGCGCCGGCGGTACGAGGAGATGT
TGCAGCAGGGCGAGGGCGAACAGGGAGCACAACTATGCGCGTTCATCGGT
ATCGGGAGCAGTGACCAGGATATGCAGCAGCTGGATCTCAATGGCAAGCA
GTACTGTGCGGCCAAGACGCTCTTCATCTCGGACTCGGACAAGCGAAAAC
ACTTTATGCTGTCGGTGAAGATGTTTTACGGAAACGGTCATGACATTGGC
GTTTTTAACTCGAAACGGATCAAGGTTATATCCAAGCCGTCCAAAAAGAA
ACAGTCGCTAAAGAATGCCGATCTGTGCATAGCCAGCGGCACCAATGTAG
CCCTGTTCAATCGCCTGCGTTCCCAGACTGTCTCCACCCGTTACCTTCAC
GTGGAGAACGGACACTTTCATGCGTCGTCAACACAATGGGGAGCTTTTAC
GATACACCTGCTGGATGACAATGAGTCCGAGTCGGAGGAGTTTCAGGTGC
GCGATGGTTACATTCATTACGGAGCCACAGTCAAACTGGTGTGCTCCGTA
ACGGGCATGGCCCTGCCACGTCTGATCATCCGGAAGGTAGACAAGCAGAT
GGCCCTGCTGGAAGCCGACGATCCCGTTTCTCAGCTGCACAAATGCGCCT
TCTACATGAAGGATACGGATCGGATGTATCTCTGTTTGTCGCAGGAGAAA
ATCATACAGTTCCAGGCCACGCCGTGCCCCAAGGAGCCGAACAAGGAGAT
GATCAATGACGGCGCCTGCTGGACCATCATATCCACCGACAAGGCTGAGT
ACCAGTTCTACGAGGGCATGGGTCCTGTGGCTTCTCCAGTCACTCCAGTG
CCAATCGTTAATTCCCTTAATCTCAATGGCGGCGGGGATGTGGCCATGCT
AGAGCTGAGTGGCGACAACTTTACGCCGCATCTGCAGGTGTGGTTTGGCG
ATGTGGAGGCGGAAACCATGTACCGCTGCACAGAGACATTGCTATGCGTG
GTGCCGGAGATTTCACAATTTCGAGGCGAATGGCTTTGGGTACGTCAGCC
CACGCAGGTGCCCATTTCGCTGGTGCGCAACGATGGAATAATTTATGCCA
CCGGTCTGACCTTCACGTATACACCTGAACCAGGTCCTCGGCCGCACTGC
AATACACAGGCCGAGGATGTGATGCGAGCGCGACAGAACAATAACAATAA
TAACATCACTAGCATTAGCAACAATAATAACAGCAACAATGCGGGATCGC
CGGCAGCCGGCGGTGGCTTGCAACAACAACAGCAGCAGCATCAGGCTCTG
CCCTCCATCTCAGAAGTGCAATGGAATAGTCATGGTAGCGGCTTATCCGC
AAGCTTTCTAGACCAT

BO11079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Su(H)-RC 1785 CG3497-PC 1..1782 17..1798 8910 100 Plus
Su(H)-RA 1785 CG3497-PA 1..1782 17..1798 8910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Su(H)-RC 2633 CG3497-RC 450..2231 17..1798 8910 100 Plus
Su(H)-RA 2950 CG3497-RA 450..2231 17..1798 8910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15041093..15041975 399..1281 4415 100 Plus
2L 23513712 2L 15039937..15040322 17..402 1930 100 Plus
2L 23513712 2L 15042306..15042615 1489..1798 1550 100 Plus
2L 23513712 2L 15042034..15042244 1282..1492 1055 100 Plus
Blast to na_te.dros performed 2014-11-28 00:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6898 116..280 332 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2382..2546 116..274 306 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6921 116..273 303 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2485 116..282 299 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2507 116..280 285 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6879 120..279 261 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6949 116..276 224 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2832..2999 107..262 209 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2957 119..274 188 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6951 116..273 187 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6858 1631..1743 182 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1054..1153 106..205 167 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2465 1630..1744 158 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6883 1624..1744 153 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2441 1630..1744 152 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6827..6956 116..239 150 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6878..7028 116..272 148 58.6 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 2820..2903 1609..1690 136 65.9 Plus
Stalker 7256 Stalker STALKER 7256bp 2714..2797 1609..1690 136 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2770..2839 1679..1746 128 70.4 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2636..2686 1638..1691 128 74.1 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7145..7188 1723..1766 121 75 Plus
TART-C 11124 TART-C TARTC 11124bp 8598..8641 1723..1766 121 75 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 17..69 1638..1690 121 69.8 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7055..7107 1638..1690 121 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1549..1588 111..150 119 77.5 Plus
gypsy8 4955 gypsy8 GYPSY8 4955bp 3988..4068 131..50 118 65.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2360 1720..1744 116 96 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6895 1635..1689 113 67.3 Plus

BO11079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:31 Download gff for BO11079.complete
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 1..1785 17..1801 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:20 Download gff for BO11079.complete
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 437..2223 9..1798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:05 Download gff for BO11079.complete
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 450..2231 17..1800 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:31 Download gff for BO11079.complete
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 437..2223 9..1798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:13 Download gff for BO11079.complete
Subject Subject Range Query Range Percent Splice Strand
Su(H)-RA 450..2231 17..1800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:13 Download gff for BO11079.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15042034..15042241 1282..1489 100 -> Plus
2L 15039937..15040320 17..400 100 -> Plus
2L 15041095..15041975 401..1281 100 -> Plus
2L 15042307..15042615 1490..1800 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:05 Download gff for BO11079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15039937..15040320 17..400 100 -> Plus
arm_2L 15041095..15041975 401..1281 100 -> Plus
arm_2L 15042034..15042241 1282..1489 100 -> Plus
arm_2L 15042307..15042615 1490..1800 99   Plus

BO11079.pep Sequence

Translation from 16 to 1816

> BO11079.pep
MKSYSQFNLNAAAPPAIAYETTVVNPNGSPLDPHQQQQQQSQDMPHFGLP
GPQPPSSQQQQQQLQVHHQQQQQQQQQQQQQQHQQQMQMSLLPGPYRPHI
EEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLF
GSGWRRRYEEMLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLNGKQYCAAK
TLFISDSDKRKHFMLSVKMFYGNGHDIGVFNSKRIKVISKPSKKKQSLKN
ADLCIASGTNVALFNRLRSQTVSTRYLHVENGHFHASSTQWGAFTIHLLD
DNESESEEFQVRDGYIHYGATVKLVCSVTGMALPRLIIRKVDKQMALLEA
DDPVSQLHKCAFYMKDTDRMYLCLSQEKIIQFQATPCPKEPNKEMINDGA
CWTIISTDKAEYQFYEGMGPVASPVTPVPIVNSLNLNGGGDVAMLELSGD
NFTPHLQVWFGDVEAETMYRCTETLLCVVPEISQFRGEWLWVRQPTQVPI
SLVRNDGIIYATGLTFTYTPEPGPRPHCNTQAEDVMRARQNNNNNNITSI
SNNNNSNNAGSPAAGGGLQQQQQQHQALPSISEVQWNSHGSGLSASFLDH

BO11079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Su(H)-PC 594 CG3497-PC 1..594 1..594 3171 100 Plus
Su(H)-PA 594 CG3497-PA 1..594 1..594 3171 100 Plus
Sp1-PB 520 CG1343-PB 413..472 23..88 159 54.5 Plus
Sp1-PD 715 CG1343-PD 608..667 23..88 159 54.5 Plus
Sp1-PE 720 CG1343-PE 613..672 23..88 159 54.5 Plus