Clone BO11081 Report

Search the DGRC for BO11081

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptamon-RA
Protein status:BO11081.pep: validated full length
Sequenced Size:1996

Clone Sequence Records

BO11081.3prime Sequence

937 bp (806 high quality bases) assembled on 2006-04-19

> BO11081.3prime
ATGGTCTAGAAAGCTTGCCTTCATCTTCTTGTCCTCGTGCGCCTTCTTCA
CAATGGCCAGCTTGGAGTGCGGCGACGAGGGGTGCAGGGTGCGATAGGGC
GCCTCCTTGGTGCCATGCAGGACCAAGGACCATTCCAGCAGATTGCCGTG
TCGTGTTTGGGGCGAGTTGAAGCGAGCCTCCAATTTCCAGGTCCCCTGCG
GATACTCGCCCCACGAGTGAGTGGTCATAAAGGGCCATTTGGTGAAGCCA
TCGCGGTGGTCATCATCGTTGGCGCGCCTCGACAGGATCATGGATTTTGT
GCCCATTGGCGATGTAAGGAAAAGTTCAAGATCCCCGCGTCGTGAGGCAT
TTGCCGAGATCACCGCCTGCACGTGTTCCAAATAGTTGACCTCCGTGTCG
GTGCCCTTGCAAGCATCGGTTTTGATCTCCCAGAAGAGCGAACGACCCAT
AACAATGGCCTGTGGCTGGGTAAGCTCGCCCGCCTCGCAATGATAGCGCG
GTGGCACTGAATGCCACTGCTTGGATAGTGTGACCATGGCGCCGGCGTCC
AGCACTCCGAACCCGAATAGGTGGTTGAACTCCAGGCCCACGCCGTTCAT
TGTCCAGTGGAATCGGTTCTTGGCATCGAACAGCGAGTTGCGCTTCGATG
TCAGCACCGTCAGATGCTGTATGTCCCGCCAAGTCAGCTGAGGATTGGCC
TCCAAGGCCAGGGCAAAGACGCCCGCTGCTTCGGGCGCCGCCGCACTGGT
GCCCGAGTGGGTGGTCGTGCACTTGCCATAGAGGTCCGTGGTGGCAACGC
CCGTGTTGGGGTCCTTGGCTCCGTTGCTGAATGTGGACGCCAGCGTGGAG
CTGCAGCTCTCGTCGTAGTGGGCGTTCTGGCCGTCGTTAATGCCACTGTT
AATGGGAAATGGTCACATGGAGGCGGCGTAGCCGTCA

BO11081.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6438-PA 1965 amon-RA 1076..1962 905..19 4410 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
amon-RA 3991 CG6438-RA 1480..2398 937..19 4535 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26699947..26700181 460..694 1175 100 Plus
3R 32079331 3R 26700427..26700669 695..937 1125 97.5 Plus
3R 32079331 3R 26699715..26699879 296..460 825 100 Plus
3R 32079331 3R 26699290..26699450 19..179 805 100 Plus
3R 32079331 3R 26699502..26699620 177..295 595 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:59:04 has no hits.

BO11081.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:42 Download gff for BO11081.3prime
Subject Subject Range Query Range Percent Splice Strand
amon-PA 1045..1965 18..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:01 Download gff for BO11081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6438-PA 1045..1965 18..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:08 Download gff for BO11081.3prime
Subject Subject Range Query Range Percent Splice Strand
amon-RA 1481..2398 19..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:16 Download gff for BO11081.3prime
Subject Subject Range Query Range Percent Splice Strand
amon-RA 1481..2398 19..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:16 Download gff for BO11081.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26700427..26700668 695..936 98   Plus
3R 26699948..26700181 461..694 100 <- Plus
3R 26699715..26699879 296..460 100 <- Plus
3R 26699290..26699448 19..177 100 <- Plus
3R 26699503..26699620 178..295 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:08 Download gff for BO11081.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22525012..22525170 19..177 100 <- Plus
arm_3R 22525225..22525342 178..295 100 <- Plus
arm_3R 22525437..22525601 296..460 100 <- Plus
arm_3R 22525670..22525903 461..694 100 <- Plus
arm_3R 22526149..22526390 695..936 98   Plus

BO11081.5prime Sequence

911 bp (808 high quality bases) assembled on 2006-04-19

> BO11081.5prime
GAAGTTATCAGTCGACATGGCAGCAGCCACATGGAGCTGGCTGTTGGCCC
CATTCCTGCTCCTCCACTGGGCCAGTGCAGGAGCGGGCGGAGGAGCAGGC
GGCTCGGGAGCGGGACTGAGCGGCCCCGCCGTCTTTACCAGCTCCTTCCT
GGTGCGCTTCCGGCGCGGAGTGGACAACTCGTTTGCCCATGATGTGGCCG
ACAAGTACGGCTTCGACAACCTAGGCCCGCTGGTCGGCGCCGATGGACAC
GAGTATCATTTCAAGCACCGGACCCTTCCACATGCCCGCTCCAGGAGGAG
TCTGACGCACACACGGGCCCTCAAGAGCCATCCGGCGGTGCATACGGCCG
TGCAACAGCCGGGATTCAAGCGGGTTAAACGTGGCCTGCGGCCGGCGGTG
CCCGCCATTCACGGCATGAAGTTCGACCTGAAAGTTGGCGAGGGCAATCG
GATTGACGAGGAGCCCACTGACCCCTACTTTCCCATGCAATGGTACCTCA
AGAACACGGGTCAGAATGGCGGCAAAGTCAGGCTGGATCTGAATGTGCAG
GCTGCCTGGGCCCAGGGAATCACCGGGAAGAATGTTACGACGGCCATCAT
GGATGATGGCGTGGACTACATGCATCCGGATCTGAAATTCAATTATAACG
CCGAGGCCAGTTATGACTTCAGCAGTAACGATCCCTTTCCGTATCCCCGA
TACACCGACGACTGGTTCAACAGCCATGGAACTCGTTGTGCCGGCGAAGT
GGCTGCTGCCAGAGATAATGGAATTTGCGGCGTTGGCGTTGCTTATGACA
GCAAAATCGCAGGCATTCGCATGCTGGATCAGCCGTACATGACGGACCTA
ATCGAGGCCAACTCCATGGGCCACGAGCCGCACAAAATCCACATATACAG
CGCCTCCTGGG

BO11081.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6438-PA 1965 amon-RA 1..895 17..911 4475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
amon-RA 3991 CG6438-RA 436..1331 16..911 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26702601..26702873 609..337 1365 100 Minus
3R 32079331 3R 26713511..26713724 229..16 1070 100 Minus
3R 32079331 3R 26703712..26703823 340..229 560 100 Minus
3R 32079331 3R 26700889..26700990 911..810 510 100 Minus
3R 32079331 3R 26701515..26701607 813..721 465 100 Minus
3R 32079331 3R 26701948..26702024 723..647 385 100 Minus
3R 32079331 3R 26702474..26702512 646..608 195 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:39:15 has no hits.

BO11081.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:43 Download gff for BO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
amon-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:02 Download gff for BO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6438-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:42 Download gff for BO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
amon-RA 434..1331 12..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:38 Download gff for BO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
amon-RA 434..1331 12..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:38 Download gff for BO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26703715..26703822 230..337 100 <- Minus
3R 26713511..26713726 12..229 99   Minus
3R 26700889..26700987 813..911 100 <- Minus
3R 26701516..26701604 724..812 100 <- Minus
3R 26701948..26702024 647..723 100 <- Minus
3R 26702474..26702511 609..646 100 <- Minus
3R 26702602..26702872 338..608 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:42 Download gff for BO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22527670..22527746 647..723 100 <- Minus
arm_3R 22528196..22528233 609..646 100 <- Minus
arm_3R 22526611..22526709 813..911 100 <- Minus
arm_3R 22527238..22527326 724..812 100 <- Minus
arm_3R 22528324..22528594 338..608 100 <- Minus
arm_3R 22529437..22529544 230..337 100 <- Minus
arm_3R 22539233..22539448 12..229 99   Minus

BO11081.complete Sequence

1996 bp (1996 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631990

> BO11081.complete
GAAGTTATCAGTCGACATGGCAGCAGCCACATGGAGCTGGCTGTTGGCCC
CATTCCTGCTCCTCCACTGGGCCAGTGCAGGAGCGGGCGGAGGAGCAGGC
GGCTCGGGAGCGGGACTGAGCGGCCCCGCCGTCTTTACCAGCTCCTTCCT
GGTGCGCTTCCGGCGCGGAGTGGACAACTCGTTTGCCCATGATGTGGCCG
ACAAGTACGGCTTCGACAACCTAGGCCCGCTGGTCGGCGCCGATGGACAC
GAGTATCATTTCAAGCACCGGACCCTTCCACATGCCCGCTCCAGGAGGAG
TCTGACGCACACACGGGCCCTCAAGAGCCATCCGGCGGTGCATACGGCCG
TGCAACAGCCGGGATTCAAGCGGGTTAAACGTGGCCTGCGGCCGGCGGTG
CCCGCCATTCACGGCATGAAGTTCGACCTGAAAGTTGGCGAGGGCAATCG
GATTGACGAGGAGCCCACTGACCCCTACTTTCCCATGCAATGGTACCTCA
AGAACACGGGTCAGAATGGCGGCAAAGTCAGGCTGGATCTGAATGTGCAG
GCTGCCTGGGCCCAGGGAATCACCGGGAAGAATGTTACGACGGCCATCAT
GGATGATGGCGTGGACTACATGCATCCGGATCTGAAATTCAATTATAACG
CCGAGGCCAGTTATGACTTCAGCAGTAACGATCCCTTTCCGTATCCCCGA
TACACCGACGACTGGTTCAACAGCCATGGAACTCGTTGTGCCGGCGAAGT
GGCTGCTGCCAGAGATAATGGAATTTGCGGCGTTGGCGTTGCTTATGACA
GCAAAATCGCAGGCATTCGCATGCTGGATCAGCCGTACATGACGGACCTA
ATCGAGGCCAACTCCATGGGCCACGAGCCGCACAAAATCCACATATACAG
CGCCTCCTGGGGTCCCACCGATGATGGCAAGACCGTGGACGGTCCCCGGA
ATGCCACCATGCGAGCGATAGTCCAGGGCGTCAATGAGGGTCGAAATGGC
CTGGGCAACATCTATGTTTGGGCATCCGGCGACGGCGGCGAGGAGGATGA
CTGCAATTGTGACGGCTACGCCGCCTCCATGTGGACCATTTCCATTAACA
GTGCCATTAACGACGGCCAGAACGCCCACTACGACGAGAGCTGCAGCTCC
ACGCTGGCGTCCACATTCAGCAACGGAGCCAAGGACCCCAACACGGGCGT
TGCCACCACGGACCTCTATGGCAAGTGCACGACCACCCACTCGGGCACCA
GTGCGGCGGCGCCCGAAGCAGCGGGCGTCTTTGCCCTGGCCTTGGAGGCC
AATCCTCAGCTGACTTGGCGGGACATACAGCATCTGACGGTGCTGACATC
GAAGCGCAACTCGCTGTTCGATGCCAAGAACCGATTCCACTGGACAATGA
ACGGCGTGGGCCTGGAGTTCAACCACCTATTCGGGTTCGGAGTGCTGGAC
GCCGGCGCCATGGTCACACTATCCAAGCAGTGGCATTCAGTGCCACCGCG
CTATCATTGCGAGGCGGGCGAGCTTACCCAGCCACAGGCCATTGTTATGG
GTCGTTCGCTCTTCTGGGAGATCAAAACCGATGCTTGCAAGGGCACCGAC
ACGGAGGTCAACTATTTGGAACACGTGCAGGCGGTGATCTCGGCAAATGC
CTCACGACGCGGGGATCTTGAACTTTTCCTTACATCGCCAATGGGCACAA
AATCCATGATCCTGTCGAGGCGCGCCAACGATGATGACCACCGCGATGGC
TTCACCAAATGGCCCTTTATGACCACTCACTCGTGGGGCGAGTATCCGCA
GGGGACCTGGAAATTGGAGGCTCGCTTCAACTCGCCCCAAACACGACACG
GCAATCTGCTGGAATGGTCCTTGGTCCTGCATGGCACCAAGGAGGCGCCC
TATCGCACCCTGCACCCCTCGTCGCCGCACTCCAAGCTGGCCATTGTGAA
GAAGGCGCACGAGGACAAGAAGATGAAGGCAAGCTTTCTAGACCAT

BO11081.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
amon-RA 1965 CG6438-PA 1..1962 17..1978 9810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
amon-RA 3991 CG6438-RA 436..2398 16..1978 9815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26700427..26700742 1302..987 1580 100 Minus
3R 32079331 3R 26702601..26702873 609..337 1365 100 Minus
3R 32079331 3R 26699947..26700181 1537..1303 1175 100 Minus
3R 32079331 3R 26713511..26713724 229..16 1070 100 Minus
3R 32079331 3R 26700811..26700990 989..810 900 100 Minus
3R 32079331 3R 26699715..26699879 1701..1537 825 100 Minus
3R 32079331 3R 26699290..26699450 1978..1818 805 100 Minus
3R 32079331 3R 26699502..26699620 1820..1702 595 100 Minus
3R 32079331 3R 26703712..26703823 340..229 560 100 Minus
3R 32079331 3R 26701515..26701607 813..721 465 100 Minus
3R 32079331 3R 26701948..26702024 723..647 385 100 Minus
3R 32079331 3R 26702474..26702512 646..608 195 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:59:25 has no hits.

BO11081.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:32 Download gff for BO11081.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 1..1965 17..1979 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:11 Download gff for BO11081.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 437..2398 17..1980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:35 Download gff for BO11081.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 437..2398 17..1980 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:32 Download gff for BO11081.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 434..2398 12..1978 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:33 Download gff for BO11081.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 437..2398 17..1980 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:33 Download gff for BO11081.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26699948..26700181 1303..1536 100 <- Minus
3R 26699288..26699448 1820..1980 98 <- Minus
3R 26699503..26699620 1702..1819 100 <- Minus
3R 26699715..26699879 1537..1701 100 <- Minus
3R 26700427..26700740 989..1302 100 <- Minus
3R 26700812..26700987 813..988 100 <- Minus
3R 26701516..26701604 724..812 100 <- Minus
3R 26701948..26702024 647..723 100 <- Minus
3R 26702474..26702511 609..646 100 <- Minus
3R 26702602..26702872 338..608 100 <- Minus
3R 26703715..26703822 230..337 100 <- Minus
3R 26713511..26713723 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:35 Download gff for BO11081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22527670..22527746 647..723 100 <- Minus
arm_3R 22528196..22528233 609..646 100 <- Minus
arm_3R 22525010..22525170 1820..1980 98 <- Minus
arm_3R 22525225..22525342 1702..1819 100 <- Minus
arm_3R 22525437..22525601 1537..1701 100 <- Minus
arm_3R 22525670..22525903 1303..1536 100 <- Minus
arm_3R 22528324..22528594 338..608 100 <- Minus
arm_3R 22529437..22529544 230..337 100 <- Minus
arm_3R 22526149..22526462 989..1302 100 <- Minus
arm_3R 22526534..22526709 813..988 100 <- Minus
arm_3R 22527238..22527326 724..812 100 <- Minus
arm_3R 22539233..22539445 17..229 100   Minus

BO11081.pep Sequence

Translation from 16 to 1996

> BO11081.pep
MAAATWSWLLAPFLLLHWASAGAGGGAGGSGAGLSGPAVFTSSFLVRFRR
GVDNSFAHDVADKYGFDNLGPLVGADGHEYHFKHRTLPHARSRRSLTHTR
ALKSHPAVHTAVQQPGFKRVKRGLRPAVPAIHGMKFDLKVGEGNRIDEEP
TDPYFPMQWYLKNTGQNGGKVRLDLNVQAAWAQGITGKNVTTAIMDDGVD
YMHPDLKFNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVAAARD
NGICGVGVAYDSKIAGIRMLDQPYMTDLIEANSMGHEPHKIHIYSASWGP
TDDGKTVDGPRNATMRAIVQGVNEGRNGLGNIYVWASGDGGEEDDCNCDG
YAASMWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDL
YGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSL
FDAKNRFHWTMNGVGLEFNHLFGFGVLDAGAMVTLSKQWHSVPPRYHCEA
GELTQPQAIVMGRSLFWEIKTDACKGTDTEVNYLEHVQAVISANASRRGD
LELFLTSPMGTKSMILSRRANDDDHRDGFTKWPFMTTHSWGEYPQGTWKL
EARFNSPQTRHGNLLEWSLVLHGTKEAPYRTLHPSSPHSKLAIVKKAHED
KKMKASFLDH

BO11081.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
amon-PA 654 CG6438-PA 1..654 1..654 3552 100 Plus
Fur1-PB 1269 CG10772-PB 215..801 22..639 1243 42.9 Plus
Fur1-PH 864 CG10772-PH 215..789 22..625 1217 42.6 Plus
Fur1-PI 892 CG10772-PI 215..789 22..625 1217 42.6 Plus
Fur1-PC 892 CG10772-PC 215..789 22..625 1217 42.6 Plus