Clone BO11084 Report

Search the DGRC for BO11084

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:110
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG1358-RA
Protein status:BO11084.pep: validated full length
Sequenced Size:1480

Clone Sequence Records

BO11084.3prime Sequence

909 bp (869 high quality bases) assembled on 2006-04-19

> BO11084.3prime
ATGGTCTAGAAAGCTTGCTGGATTGCCAGCCTGTCCGCTGGCCGGCACCT
GGGCGTTCTGGCGCCTCAGATCCGACTGGGTGATGGCCGTGATAATGGTG
CCCACAATCAGCATCACGGCCATGGTTATGTTGGCGGCTATGTCGCCGAA
CGTGGTGAACAGCTCCGAGTAGAAGAGCGTAAAGCATATGCCGAAGGTTT
GCGCGGAGGCGTTCAGCAGTCCGGAGGAGGTGCCCTCCGGCTCCGGGAAG
GTCAGCTCGGCGCCGAACTCGAAGCCCACCGGCAGGTAACCAGTCATAAA
GAAGCCCAGCAGCGAGGCCGTCAGGTAGACCACCGCGATGTGCCCCGTGT
CCAAGGTGAAGGTGAAGATCCACATGCCCACCATGGACAGCGCGTAGACC
GCCAGCGTCGTTTCCTTGAACTTGTGCGTCTTATCCAGCACAATGCCCGA
TACCACGGAGCCCAGCATCCCGGCTAGCACAATGCTGAGCCCAATACGTC
CGGCGTCCACCTCGTGGCCGGGATAATACTTCAGCACCACCGGATTGAGG
AGCGTGGAAATGGCGTAAAAGACGCCCACATTGATGCCGTACGAGAGGAG
CAGGAAGATGAAGTTCCGGTTGGTCATCAGGTTCTTCAGCGACTGCATGA
AGCTGACTTGCTCCGCTTCGGAACTTTCCAAGAGCTGGGCTGCCTCCTGG
GCGGCGGATGGCGGAGTGGGTGGTTTGTCCTGGAAAAATATCACCATCAG
GACGAGCAGGATAGAGGTGAGCCCGGCCACCAAATAGAACATCATCTGCA
GATCACTGCCCACCGTCTCGAGATCCGGTGAATTGGGCACCAGCATGGGT
GGCAGCACGAAGCCCACGGCCACGCCCAGCTGGTTTGCAAAGACTCCCAC
GCTGGTGGC

BO11084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-PC 1449 CG1358-RC 556..1446 909..19 4405 99.7 Minus
CG1358-PA 1449 CG1358-RA 556..1446 909..19 4405 99.7 Minus
CG1358-PB 1449 CG1358-RB 556..1446 909..19 4405 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-RD 3094 CG1358-RD 926..1816 909..19 4425 99.8 Minus
CG1358-RB 2485 CG1358-RB 787..1677 909..19 4425 99.8 Minus
CG1358-RA 3374 CG1358-RA 1676..2566 909..19 4425 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7596543..7596829 19..305 1435 100 Plus
2R 25286936 2R 7597467..7597665 539..737 995 100 Plus
2R 25286936 2R 7598216..7598360 738..882 725 100 Plus
2R 25286936 2R 7597264..7597390 415..541 635 100 Plus
2R 25286936 2R 7596950..7597060 305..415 555 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:55:19 has no hits.

BO11084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:47 Download gff for BO11084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-PB 556..1449 18..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:06 Download gff for BO11084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-PB 556..1449 18..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:24:36 Download gff for BO11084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1664..2554 19..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:16 Download gff for BO11084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1676..2566 19..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:16 Download gff for BO11084.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7597265..7597389 416..540 100 <- Plus
2R 7597469..7597665 541..737 100 <- Plus
2R 7598216..7598357 738..879 100 <- Plus
2R 7602432..7602461 880..909 93   Plus
2R 7596543..7596828 19..304 100 <- Plus
2R 7596950..7597060 305..415 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:24:36 Download gff for BO11084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3484048..3484333 19..304 100 <- Plus
arm_2R 3484455..3484565 305..415 100 <- Plus
arm_2R 3484770..3484894 416..540 100 <- Plus
arm_2R 3484974..3485170 541..737 100 <- Plus
arm_2R 3485721..3485862 738..879 100 <- Plus
arm_2R 3489937..3489966 880..909 93   Plus

BO11084.5prime Sequence

900 bp (800 high quality bases) assembled on 2006-04-19

> BO11084.5prime
GAAGTTATCAGTCGACATGGACCTGAAGCACAGTGCGGGTGGAGCTGGCG
AGAACAGCGAGACCTTCATTGCCACCAGCAAGTCCACAGACATGATCACG
CCCAAGGAGAAGGAGGGCAAGGGGCTGAAGGTGGCGGGTGGCCATAACCC
CCCAGCCGAAGGCTACAAAGTCTACGCCCGACGCTGGGCGGTGCTCATCC
TCTTTGTGTTCTACTCATCCTCGAATGCCATGCAGTGGATACAATACACC
ATCATCAACAACATAATAACCCGCTACTATGGCATCAGCGACAAGTGGGT
GGACTGGACGTCCATGATTTATATGATCCTGTACATACCGCTCATATTCC
CAGGCAGTTGGTTTTTGGATAAAGTGGGTCTTCGCATCACCGCTCTAGTT
GGAATCGTCGGCACTTGTGTGGGTGCCTGGATCAAGGTCTTCTCGGTGGA
CCCGTCGCTCTTCTACGTCAGCTTCATTGGCCAGTCGATCGTTGCCCTGG
CCCAAGTGTGCATCCTGTCGCTTCCCGCGCGCTTGGCTGCGGTATGGTTC
GGTCCGGACCAGGTGTCCTCGGCCACCAGCGTGGGAGTCTTTGGCAACCA
GCTGGGCGTGGCCGTGGGCTTCGTGCTGCCACCCATGCTGGTGCCCAATT
CACCGGATCTCGAGACGGTGGGCAGTGATCTGCAGATGATGTTCTATTTG
GTGGCCGGGCTCACCTCTATCCTGCTCGTCCTGATGGTGATATTTTTCCA
GGACAAACCACCCACTCCGCCATCCGCCGCCCAGGAGGCAGCCCAGCTCT
TGGAAAGTTCCGAAGCGGAGCAAGTCAGCTTCATGCAGTCGCTGAAGAAC
CTGATGACCCAACCGGAACTTCATCTTCCTGCTCCTCTCGTACGGCATCA

BO11084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-PC 1449 CG1358-RC 1..843 17..859 4215 100 Plus
CG1358-PA 1449 CG1358-RA 1..843 17..859 4215 100 Plus
CG1358-PB 1449 CG1358-RB 1..843 17..859 4215 100 Plus
CG1358-PC 1449 CG1358-RC 842..883 859..900 210 100 Plus
CG1358-PA 1449 CG1358-RA 842..883 859..900 210 100 Plus
CG1358-PB 1449 CG1358-RB 842..883 859..900 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-RD 3094 CG1358-RD 371..1253 17..900 4395 99.9 Plus
CG1358-RB 2485 CG1358-RB 232..1114 17..900 4395 99.9 Plus
CG1358-RA 3374 CG1358-RA 1121..2003 17..900 4395 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7602432..7602657 601..376 1130 100 Minus
2R 25286936 2R 7597510..7597665 900..744 735 99.4 Minus
2R 25286936 2R 7605943..7606088 162..17 730 100 Minus
2R 25286936 2R 7598216..7598360 743..599 725 100 Minus
2R 25286936 2R 7603408..7603521 273..160 570 100 Minus
2R 25286936 2R 7603121..7603225 377..273 525 100 Minus
Blast to na_te.dros performed 2015-02-11 09:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1011..1089 667..591 138 65.8 Minus

BO11084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:48 Download gff for BO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-PB 1..882 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:08 Download gff for BO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-PB 1..882 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:14 Download gff for BO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1103..1990 9..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:34 Download gff for BO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1115..2002 9..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:34 Download gff for BO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7597511..7597665 744..899 99 <- Minus
2R 7598216..7598357 602..743 100 <- Minus
2R 7602432..7602656 377..601 100 <- Minus
2R 7603122..7603224 274..376 100 <- Minus
2R 7603408..7603519 162..273 100 <- Minus
2R 7605944..7606094 9..161 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:14 Download gff for BO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3485016..3485170 744..899 99 <- Minus
arm_2R 3485721..3485862 602..743 100 <- Minus
arm_2R 3489937..3490161 377..601 100 <- Minus
arm_2R 3490627..3490729 274..376 100 <- Minus
arm_2R 3490913..3491024 162..273 100 <- Minus
arm_2R 3493449..3493599 9..161 97   Minus

BO11084.complete Sequence

1480 bp (1480 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ631991

> BO11084.complete
GAAGTTATCAGTCGACATGGACCTGAAGCACAGTGCGGGTGGAGCTGGCG
AGAACAGCGAGACCTTCATTGCCACCAGCAAGTCCACAGACATGATCACG
CCCAAGGAGAAGGAGGGCAAGGGGCTGAAGGTGGCGGGTGGCCATAACCC
CCCAGCCGAAGGCTACAAAGTCTACGCCCGACGCTGGGCGGTGCTCATCC
TCTTTGTGTTCTACTCATCCTCGAATGCCATGCAGTGGATACAATACACC
ATCATCAACAACATAATAACCCGCTACTATGGCATCAGCGACAAGTGGGT
GGACTGGACGTCCATGATTTATATGATCCTGTACATACCGCTCATATTCC
CAGGCAGTTGGTTTTTGGATAAAGTGGGTCTTCGCATCACCGCTCTAGTT
GGAATCGTCGGCACTTGTGTGGGTGCCTGGATCAAGGTCTTCTCGGTGGA
CCCGTCGCTCTTCTACGTCAGCTTCATTGGCCAGTCGATCGTTGCCCTGG
CCCAAGTGTGCATCCTGTCGCTTCCCGCGCGCTTGGCTGCGGTATGGTTC
GGTCCGGACCAGGTGTCCTCGGCCACCAGCGTGGGAGTCTTTGGCAACCA
GCTGGGCGTGGCCGTGGGCTTCGTGCTGCCACCCATGCTGGTGCCCAATT
CACCGGATCTCGAGACGGTGGGCAGTGATCTGCAGATGATGTTCTATTTG
GTGGCCGGGCTCACCTCTATCCTGCTCGTCCTGATGGTGATATTTTTCCA
GGACAAACCACCCACTCCGCCATCCGCCGCCCAGGAGGCAGCCCAGCTCT
TGGAAAGTTCCGAAGCGGAGCAAGTCAGCTTCATGCAGTCGCTGAAGAAC
CTGATGACCAACCGGAACTTCATCTTCCTGCTCCTCTCGTACGGCATCAA
TGTGGGCGTCTTTTACGCCATTTCCACGCTCCTCAATCCGGTGGTGCTGA
AGTATTATCCCGGCCACGAGGTGGACGCCGGACGTATTGGGCTCAGCATT
GTGCTAGCCGGGATGCTGGGCTCCGTGGTATCGGGCATTGTGCTGGATAA
GACGCACAAGTTCAAGGAAACGACGCTGGCGGTCTACGCGCTGTCCATGG
TGGGCATGTGGATCTTCACCTTCACCTTGGACACGGGGCACATCGCGGTG
GTCTACCTGACGGCCTCGCTGCTGGGCTTCTTTATGACTGGTTACCTGCC
GGTGGGCTTCGAGTTCGGCGCCGAGCTGACCTTCCCGGAGCCGGAGGGCA
CCTCCTCCGGACTGCTGAACGCCTCCGCGCAAACCTTCGGCATATGCTTT
ACGCTCTTCTACTCGGAGCTGTTCACCACGTTCGGCGACATAGCCGCCAA
CATAACCATGGCCGTGATGCTGATTGTGGGCACCATTATCACGGCCATCA
CCCAGTCGGATCTGAGGCGCCAGAACGCCCAGGTGCCGGCCAGCGGACAG
GCTGGCAATCCAGCAAGCTTTCTAGACCAT

BO11084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-RD 1449 CG1358-PD 1..1446 17..1462 7230 100 Plus
CG1358-RB 1449 CG1358-PB 1..1446 17..1462 7230 100 Plus
CG1358-RA 1449 CG1358-PA 1..1446 17..1462 7230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-RD 3094 CG1358-RD 371..1816 17..1462 7230 100 Plus
CG1358-RB 2485 CG1358-RB 232..1677 17..1462 7230 100 Plus
CG1358-RA 3374 CG1358-RA 1121..2566 17..1462 7230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7596543..7596829 1462..1176 1435 100 Minus
2R 25286936 2R 7602432..7602657 601..376 1130 100 Minus
2R 25286936 2R 7597467..7597665 942..744 995 100 Minus
2R 25286936 2R 7605943..7606088 162..17 730 100 Minus
2R 25286936 2R 7598216..7598360 743..599 725 100 Minus
2R 25286936 2R 7597264..7597390 1066..940 635 100 Minus
2R 25286936 2R 7603408..7603521 273..160 570 100 Minus
2R 25286936 2R 7596950..7597060 1176..1066 555 100 Minus
2R 25286936 2R 7603121..7603225 377..273 525 100 Minus
Blast to na_te.dros performed 2014-11-28 00:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1011..1089 667..591 138 65.8 Minus

BO11084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:30 Download gff for BO11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RB 1..1449 17..1463 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:23 Download gff for BO11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RB 221..1672 9..1462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:48 Download gff for BO11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1109..2554 17..1464 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:30 Download gff for BO11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RB 221..1672 9..1462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:49 Download gff for BO11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1121..2566 17..1464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:49 Download gff for BO11084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7603122..7603224 274..376 100 <- Minus
2R 7603408..7603519 162..273 100 <- Minus
2R 7598216..7598357 602..743 100 <- Minus
2R 7605944..7606088 17..161 100   Minus
2R 7602432..7602656 377..601 100 <- Minus
2R 7597469..7597665 744..940 100 <- Minus
2R 7596541..7596828 1177..1464 99 <- Minus
2R 7596950..7597060 1066..1176 100 <- Minus
2R 7597265..7597389 941..1065 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:48 Download gff for BO11084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3484046..3484333 1177..1464 99 <- Minus
arm_2R 3484455..3484565 1066..1176 100 <- Minus
arm_2R 3484770..3484894 941..1065 100 <- Minus
arm_2R 3484974..3485170 744..940 100 <- Minus
arm_2R 3485721..3485862 602..743 100 <- Minus
arm_2R 3489937..3490161 377..601 100 <- Minus
arm_2R 3490627..3490729 274..376 100 <- Minus
arm_2R 3490913..3491024 162..273 100 <- Minus
arm_2R 3493449..3493593 17..161 100   Minus

BO11084.pep Sequence

Translation from 16 to 1480

> BO11084.pep
MDLKHSAGGAGENSETFIATSKSTDMITPKEKEGKGLKVAGGHNPPAEGY
KVYARRWAVLILFVFYSSSNAMQWIQYTIINNIITRYYGISDKWVDWTSM
IYMILYIPLIFPGSWFLDKVGLRITALVGIVGTCVGAWIKVFSVDPSLFY
VSFIGQSIVALAQVCILSLPARLAAVWFGPDQVSSATSVGVFGNQLGVAV
GFVLPPMLVPNSPDLETVGSDLQMMFYLVAGLTSILLVLMVIFFQDKPPT
PPSAAQEAAQLLESSEAEQVSFMQSLKNLMTNRNFIFLLLSYGINVGVFY
AISTLLNPVVLKYYPGHEVDAGRIGLSIVLAGMLGSVVSGIVLDKTHKFK
ETTLAVYALSMVGMWIFTFTLDTGHIAVVYLTASLLGFFMTGYLPVGFEF
GAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTFGDIAANITMAV
MLIVGTIITAITQSDLRRQNAQVPASGQAGNPASFLDH

BO11084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-PD 482 CG1358-PD 1..482 1..482 2461 100 Plus
CG1358-PB 482 CG1358-PB 1..482 1..482 2461 100 Plus
CG1358-PA 482 CG1358-PA 1..482 1..482 2461 100 Plus
CG1358-PC 482 CG1358-PC 1..482 1..482 2461 100 Plus