Clone Sequence Records
BO11084.3prime Sequence
909 bp (869 high quality bases) assembled on 2006-04-19
> BO11084.3prime
ATGGTCTAGAAAGCTTGCTGGATTGCCAGCCTGTCCGCTGGCCGGCACCT
GGGCGTTCTGGCGCCTCAGATCCGACTGGGTGATGGCCGTGATAATGGTG
CCCACAATCAGCATCACGGCCATGGTTATGTTGGCGGCTATGTCGCCGAA
CGTGGTGAACAGCTCCGAGTAGAAGAGCGTAAAGCATATGCCGAAGGTTT
GCGCGGAGGCGTTCAGCAGTCCGGAGGAGGTGCCCTCCGGCTCCGGGAAG
GTCAGCTCGGCGCCGAACTCGAAGCCCACCGGCAGGTAACCAGTCATAAA
GAAGCCCAGCAGCGAGGCCGTCAGGTAGACCACCGCGATGTGCCCCGTGT
CCAAGGTGAAGGTGAAGATCCACATGCCCACCATGGACAGCGCGTAGACC
GCCAGCGTCGTTTCCTTGAACTTGTGCGTCTTATCCAGCACAATGCCCGA
TACCACGGAGCCCAGCATCCCGGCTAGCACAATGCTGAGCCCAATACGTC
CGGCGTCCACCTCGTGGCCGGGATAATACTTCAGCACCACCGGATTGAGG
AGCGTGGAAATGGCGTAAAAGACGCCCACATTGATGCCGTACGAGAGGAG
CAGGAAGATGAAGTTCCGGTTGGTCATCAGGTTCTTCAGCGACTGCATGA
AGCTGACTTGCTCCGCTTCGGAACTTTCCAAGAGCTGGGCTGCCTCCTGG
GCGGCGGATGGCGGAGTGGGTGGTTTGTCCTGGAAAAATATCACCATCAG
GACGAGCAGGATAGAGGTGAGCCCGGCCACCAAATAGAACATCATCTGCA
GATCACTGCCCACCGTCTCGAGATCCGGTGAATTGGGCACCAGCATGGGT
GGCAGCACGAAGCCCACGGCCACGCCCAGCTGGTTTGCAAAGACTCCCAC
GCTGGTGGC
BO11084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1358-PC | 1449 | CG1358-RC | 556..1446 | 909..19 | 4405 | 99.7 | Minus |
CG1358-PA | 1449 | CG1358-RA | 556..1446 | 909..19 | 4405 | 99.7 | Minus |
CG1358-PB | 1449 | CG1358-RB | 556..1446 | 909..19 | 4405 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1358-RD | 3094 | CG1358-RD | 926..1816 | 909..19 | 4425 | 99.8 | Minus |
CG1358-RB | 2485 | CG1358-RB | 787..1677 | 909..19 | 4425 | 99.8 | Minus |
CG1358-RA | 3374 | CG1358-RA | 1676..2566 | 909..19 | 4425 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7596543..7596829 | 19..305 | 1435 | 100 | Plus |
2R | 25286936 | 2R | 7597467..7597665 | 539..737 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7598216..7598360 | 738..882 | 725 | 100 | Plus |
2R | 25286936 | 2R | 7597264..7597390 | 415..541 | 635 | 100 | Plus |
2R | 25286936 | 2R | 7596950..7597060 | 305..415 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:55:19 has no hits.
BO11084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:47 Download gff for
BO11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-PB | 556..1449 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:06 Download gff for
BO11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-PB | 556..1449 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:24:36 Download gff for
BO11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RA | 1664..2554 | 19..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:16 Download gff for
BO11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RA | 1676..2566 | 19..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:16 Download gff for
BO11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7597265..7597389 | 416..540 | 100 | <- | Plus |
2R | 7597469..7597665 | 541..737 | 100 | <- | Plus |
2R | 7598216..7598357 | 738..879 | 100 | <- | Plus |
2R | 7602432..7602461 | 880..909 | 93 | | Plus |
2R | 7596543..7596828 | 19..304 | 100 | <- | Plus |
2R | 7596950..7597060 | 305..415 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:24:36 Download gff for
BO11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3484048..3484333 | 19..304 | 100 | <- | Plus |
arm_2R | 3484455..3484565 | 305..415 | 100 | <- | Plus |
arm_2R | 3484770..3484894 | 416..540 | 100 | <- | Plus |
arm_2R | 3484974..3485170 | 541..737 | 100 | <- | Plus |
arm_2R | 3485721..3485862 | 738..879 | 100 | <- | Plus |
arm_2R | 3489937..3489966 | 880..909 | 93 | | Plus |
BO11084.5prime Sequence
900 bp (800 high quality bases) assembled on 2006-04-19
> BO11084.5prime
GAAGTTATCAGTCGACATGGACCTGAAGCACAGTGCGGGTGGAGCTGGCG
AGAACAGCGAGACCTTCATTGCCACCAGCAAGTCCACAGACATGATCACG
CCCAAGGAGAAGGAGGGCAAGGGGCTGAAGGTGGCGGGTGGCCATAACCC
CCCAGCCGAAGGCTACAAAGTCTACGCCCGACGCTGGGCGGTGCTCATCC
TCTTTGTGTTCTACTCATCCTCGAATGCCATGCAGTGGATACAATACACC
ATCATCAACAACATAATAACCCGCTACTATGGCATCAGCGACAAGTGGGT
GGACTGGACGTCCATGATTTATATGATCCTGTACATACCGCTCATATTCC
CAGGCAGTTGGTTTTTGGATAAAGTGGGTCTTCGCATCACCGCTCTAGTT
GGAATCGTCGGCACTTGTGTGGGTGCCTGGATCAAGGTCTTCTCGGTGGA
CCCGTCGCTCTTCTACGTCAGCTTCATTGGCCAGTCGATCGTTGCCCTGG
CCCAAGTGTGCATCCTGTCGCTTCCCGCGCGCTTGGCTGCGGTATGGTTC
GGTCCGGACCAGGTGTCCTCGGCCACCAGCGTGGGAGTCTTTGGCAACCA
GCTGGGCGTGGCCGTGGGCTTCGTGCTGCCACCCATGCTGGTGCCCAATT
CACCGGATCTCGAGACGGTGGGCAGTGATCTGCAGATGATGTTCTATTTG
GTGGCCGGGCTCACCTCTATCCTGCTCGTCCTGATGGTGATATTTTTCCA
GGACAAACCACCCACTCCGCCATCCGCCGCCCAGGAGGCAGCCCAGCTCT
TGGAAAGTTCCGAAGCGGAGCAAGTCAGCTTCATGCAGTCGCTGAAGAAC
CTGATGACCCAACCGGAACTTCATCTTCCTGCTCCTCTCGTACGGCATCA
BO11084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1358-PC | 1449 | CG1358-RC | 1..843 | 17..859 | 4215 | 100 | Plus |
CG1358-PA | 1449 | CG1358-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
CG1358-PB | 1449 | CG1358-RB | 1..843 | 17..859 | 4215 | 100 | Plus |
CG1358-PC | 1449 | CG1358-RC | 842..883 | 859..900 | 210 | 100 | Plus |
CG1358-PA | 1449 | CG1358-RA | 842..883 | 859..900 | 210 | 100 | Plus |
CG1358-PB | 1449 | CG1358-RB | 842..883 | 859..900 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1358-RD | 3094 | CG1358-RD | 371..1253 | 17..900 | 4395 | 99.9 | Plus |
CG1358-RB | 2485 | CG1358-RB | 232..1114 | 17..900 | 4395 | 99.9 | Plus |
CG1358-RA | 3374 | CG1358-RA | 1121..2003 | 17..900 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7602432..7602657 | 601..376 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 7597510..7597665 | 900..744 | 735 | 99.4 | Minus |
2R | 25286936 | 2R | 7605943..7606088 | 162..17 | 730 | 100 | Minus |
2R | 25286936 | 2R | 7598216..7598360 | 743..599 | 725 | 100 | Minus |
2R | 25286936 | 2R | 7603408..7603521 | 273..160 | 570 | 100 | Minus |
2R | 25286936 | 2R | 7603121..7603225 | 377..273 | 525 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 09:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
412 | 7567 | 412 412 7567bp | 1011..1089 | 667..591 | 138 | 65.8 | Minus |
BO11084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:48 Download gff for
BO11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-PB | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:08 Download gff for
BO11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-PB | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:14 Download gff for
BO11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RA | 1103..1990 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:34 Download gff for
BO11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RA | 1115..2002 | 9..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:34 Download gff for
BO11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7597511..7597665 | 744..899 | 99 | <- | Minus |
2R | 7598216..7598357 | 602..743 | 100 | <- | Minus |
2R | 7602432..7602656 | 377..601 | 100 | <- | Minus |
2R | 7603122..7603224 | 274..376 | 100 | <- | Minus |
2R | 7603408..7603519 | 162..273 | 100 | <- | Minus |
2R | 7605944..7606094 | 9..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:14 Download gff for
BO11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3485016..3485170 | 744..899 | 99 | <- | Minus |
arm_2R | 3485721..3485862 | 602..743 | 100 | <- | Minus |
arm_2R | 3489937..3490161 | 377..601 | 100 | <- | Minus |
arm_2R | 3490627..3490729 | 274..376 | 100 | <- | Minus |
arm_2R | 3490913..3491024 | 162..273 | 100 | <- | Minus |
arm_2R | 3493449..3493599 | 9..161 | 97 | | Minus |
BO11084.complete Sequence
1480 bp (1480 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631991
> BO11084.complete
GAAGTTATCAGTCGACATGGACCTGAAGCACAGTGCGGGTGGAGCTGGCG
AGAACAGCGAGACCTTCATTGCCACCAGCAAGTCCACAGACATGATCACG
CCCAAGGAGAAGGAGGGCAAGGGGCTGAAGGTGGCGGGTGGCCATAACCC
CCCAGCCGAAGGCTACAAAGTCTACGCCCGACGCTGGGCGGTGCTCATCC
TCTTTGTGTTCTACTCATCCTCGAATGCCATGCAGTGGATACAATACACC
ATCATCAACAACATAATAACCCGCTACTATGGCATCAGCGACAAGTGGGT
GGACTGGACGTCCATGATTTATATGATCCTGTACATACCGCTCATATTCC
CAGGCAGTTGGTTTTTGGATAAAGTGGGTCTTCGCATCACCGCTCTAGTT
GGAATCGTCGGCACTTGTGTGGGTGCCTGGATCAAGGTCTTCTCGGTGGA
CCCGTCGCTCTTCTACGTCAGCTTCATTGGCCAGTCGATCGTTGCCCTGG
CCCAAGTGTGCATCCTGTCGCTTCCCGCGCGCTTGGCTGCGGTATGGTTC
GGTCCGGACCAGGTGTCCTCGGCCACCAGCGTGGGAGTCTTTGGCAACCA
GCTGGGCGTGGCCGTGGGCTTCGTGCTGCCACCCATGCTGGTGCCCAATT
CACCGGATCTCGAGACGGTGGGCAGTGATCTGCAGATGATGTTCTATTTG
GTGGCCGGGCTCACCTCTATCCTGCTCGTCCTGATGGTGATATTTTTCCA
GGACAAACCACCCACTCCGCCATCCGCCGCCCAGGAGGCAGCCCAGCTCT
TGGAAAGTTCCGAAGCGGAGCAAGTCAGCTTCATGCAGTCGCTGAAGAAC
CTGATGACCAACCGGAACTTCATCTTCCTGCTCCTCTCGTACGGCATCAA
TGTGGGCGTCTTTTACGCCATTTCCACGCTCCTCAATCCGGTGGTGCTGA
AGTATTATCCCGGCCACGAGGTGGACGCCGGACGTATTGGGCTCAGCATT
GTGCTAGCCGGGATGCTGGGCTCCGTGGTATCGGGCATTGTGCTGGATAA
GACGCACAAGTTCAAGGAAACGACGCTGGCGGTCTACGCGCTGTCCATGG
TGGGCATGTGGATCTTCACCTTCACCTTGGACACGGGGCACATCGCGGTG
GTCTACCTGACGGCCTCGCTGCTGGGCTTCTTTATGACTGGTTACCTGCC
GGTGGGCTTCGAGTTCGGCGCCGAGCTGACCTTCCCGGAGCCGGAGGGCA
CCTCCTCCGGACTGCTGAACGCCTCCGCGCAAACCTTCGGCATATGCTTT
ACGCTCTTCTACTCGGAGCTGTTCACCACGTTCGGCGACATAGCCGCCAA
CATAACCATGGCCGTGATGCTGATTGTGGGCACCATTATCACGGCCATCA
CCCAGTCGGATCTGAGGCGCCAGAACGCCCAGGTGCCGGCCAGCGGACAG
GCTGGCAATCCAGCAAGCTTTCTAGACCAT
BO11084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1358-RD | 1449 | CG1358-PD | 1..1446 | 17..1462 | 7230 | 100 | Plus |
CG1358-RB | 1449 | CG1358-PB | 1..1446 | 17..1462 | 7230 | 100 | Plus |
CG1358-RA | 1449 | CG1358-PA | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1358-RD | 3094 | CG1358-RD | 371..1816 | 17..1462 | 7230 | 100 | Plus |
CG1358-RB | 2485 | CG1358-RB | 232..1677 | 17..1462 | 7230 | 100 | Plus |
CG1358-RA | 3374 | CG1358-RA | 1121..2566 | 17..1462 | 7230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7596543..7596829 | 1462..1176 | 1435 | 100 | Minus |
2R | 25286936 | 2R | 7602432..7602657 | 601..376 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 7597467..7597665 | 942..744 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7605943..7606088 | 162..17 | 730 | 100 | Minus |
2R | 25286936 | 2R | 7598216..7598360 | 743..599 | 725 | 100 | Minus |
2R | 25286936 | 2R | 7597264..7597390 | 1066..940 | 635 | 100 | Minus |
2R | 25286936 | 2R | 7603408..7603521 | 273..160 | 570 | 100 | Minus |
2R | 25286936 | 2R | 7596950..7597060 | 1176..1066 | 555 | 100 | Minus |
2R | 25286936 | 2R | 7603121..7603225 | 377..273 | 525 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
412 | 7567 | 412 412 7567bp | 1011..1089 | 667..591 | 138 | 65.8 | Minus |
BO11084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:30 Download gff for
BO11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RB | 1..1449 | 17..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:23 Download gff for
BO11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RB | 221..1672 | 9..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:48 Download gff for
BO11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RA | 1109..2554 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:30 Download gff for
BO11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RB | 221..1672 | 9..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:49 Download gff for
BO11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1358-RA | 1121..2566 | 17..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:49 Download gff for
BO11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7603122..7603224 | 274..376 | 100 | <- | Minus |
2R | 7603408..7603519 | 162..273 | 100 | <- | Minus |
2R | 7598216..7598357 | 602..743 | 100 | <- | Minus |
2R | 7605944..7606088 | 17..161 | 100 | | Minus |
2R | 7602432..7602656 | 377..601 | 100 | <- | Minus |
2R | 7597469..7597665 | 744..940 | 100 | <- | Minus |
2R | 7596541..7596828 | 1177..1464 | 99 | <- | Minus |
2R | 7596950..7597060 | 1066..1176 | 100 | <- | Minus |
2R | 7597265..7597389 | 941..1065 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:48 Download gff for
BO11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3484046..3484333 | 1177..1464 | 99 | <- | Minus |
arm_2R | 3484455..3484565 | 1066..1176 | 100 | <- | Minus |
arm_2R | 3484770..3484894 | 941..1065 | 100 | <- | Minus |
arm_2R | 3484974..3485170 | 744..940 | 100 | <- | Minus |
arm_2R | 3485721..3485862 | 602..743 | 100 | <- | Minus |
arm_2R | 3489937..3490161 | 377..601 | 100 | <- | Minus |
arm_2R | 3490627..3490729 | 274..376 | 100 | <- | Minus |
arm_2R | 3490913..3491024 | 162..273 | 100 | <- | Minus |
arm_2R | 3493449..3493593 | 17..161 | 100 | | Minus |
BO11084.pep Sequence
Translation from 16 to 1480
> BO11084.pep
MDLKHSAGGAGENSETFIATSKSTDMITPKEKEGKGLKVAGGHNPPAEGY
KVYARRWAVLILFVFYSSSNAMQWIQYTIINNIITRYYGISDKWVDWTSM
IYMILYIPLIFPGSWFLDKVGLRITALVGIVGTCVGAWIKVFSVDPSLFY
VSFIGQSIVALAQVCILSLPARLAAVWFGPDQVSSATSVGVFGNQLGVAV
GFVLPPMLVPNSPDLETVGSDLQMMFYLVAGLTSILLVLMVIFFQDKPPT
PPSAAQEAAQLLESSEAEQVSFMQSLKNLMTNRNFIFLLLSYGINVGVFY
AISTLLNPVVLKYYPGHEVDAGRIGLSIVLAGMLGSVVSGIVLDKTHKFK
ETTLAVYALSMVGMWIFTFTLDTGHIAVVYLTASLLGFFMTGYLPVGFEF
GAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTFGDIAANITMAV
MLIVGTIITAITQSDLRRQNAQVPASGQAGNPASFLDH
BO11084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1358-PD | 482 | CG1358-PD | 1..482 | 1..482 | 2461 | 100 | Plus |
CG1358-PB | 482 | CG1358-PB | 1..482 | 1..482 | 2461 | 100 | Plus |
CG1358-PA | 482 | CG1358-PA | 1..482 | 1..482 | 2461 | 100 | Plus |
CG1358-PC | 482 | CG1358-PC | 1..482 | 1..482 | 2461 | 100 | Plus |