Clone Sequence Records
BO11089.3prime Sequence
954 bp (842 high quality bases) assembled on 2006-04-19
> BO11089.3prime
ATGGTCTAGAAAGCTTGCGTTGATTCGCCTCCCCAGCTCTGCCCCACCAC
CGGCGCCGATTGCCTCGCCCAGCTCGACCATCACATCCGAGTCCTGGCAG
TGACTCGTACTCGTCTCCAGAATGCTGATCCCGGTGGTATTATCCGTGCT
GACGAACGGCGTCTCGCTGAAGCGCACCTCCACGGTCTGCTCGTCGCCGG
AGTCCAGGTAATCCCCGTCCGTCTCGTCTGTCCGCCGGCGGATTCGCCTC
GTCAGCTCCACCTGTTGATGGTGTGACGGCTGCAGCTGGTGCATCTGATG
GTCGCCACCGTGCACCAGGGCGGCGTTAATGCCGCGCCCGCTAAGGATTG
GCGACACGGCACCCGTGCCATTGCCGTAAGTCGGCTCCCTGGGGATAATC
AGCAGCTTCTCCTTGGGCAGACAGGTCTCCTGGGTGATGCCGTTCTCGTC
CTGGTCGTCGGCGTCCAGACTGCCACCGCCCATGCCACCATCCCCCTTGC
CATGATGCAGTCGCGGACCACAGGTGTTCCGATCACTCCGATTATAGCCC
CTGGTGATGTTGATGATGTTGTTGTTCGAGGGATTAAAGCAGGGCAGCAC
GTGCTTGAACTCCTTGCGGAAGTTCTCGTTCAGCCAGGCGTACAGGAAGG
GATTGTAGCAGGTGGAGCTCATGGCAATAGAGTGGGCCACAAAGAAGAAT
AGGATGTAGAAGCGCCACTCGTTGGACTTGTCATCGAAGTCATCGAATAT
GTTGACCACATTGATGGGCAGCCAGCTGAGTCCGAATACCGCCACCATGG
CGATGAGCATGCGGTTGGTGCGCTTCTTGCGATCCCGATCCGCCTCCCTC
CGTCTCGAGGATTTCGATCCCGGCTTGGCCCTGGCCCGCTGGNTTAGCTT
CACCGATATCCACACGTAGCAAATCGAGATGATGAAGAAGGGCAGCACAA
ACTG
BO11089.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7395-PA | 1803 | NPFR76F-RA | 865..1800 | 954..19 | 4611 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 4374 | CG7395-RB | 1219..2154 | 954..19 | 4639 | 99.7 | Minus |
| sNPF-R-RA | 3243 | CG7395-RA | 1591..2526 | 954..19 | 4639 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20074116..20075051 | 19..954 | 4639 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:33:13 has no hits.
BO11089.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:53 Download gff for
BO11089.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7395-PA | 865..1803 | 16..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:15 Download gff for
BO11089.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7395-PA | 865..1803 | 16..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:55 Download gff for
BO11089.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 1591..2526 | 19..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:59 Download gff for
BO11089.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 1591..2526 | 19..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:59 Download gff for
BO11089.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20074116..20075051 | 19..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:55 Download gff for
BO11089.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20067216..20068151 | 19..954 | 99 | | Plus |
BO11089.5prime Sequence
882 bp (823 high quality bases) assembled on 2006-04-19
> BO11089.5prime
GAAGTTATCAGTCGACATGGCCAACTTAAGCTGGCTGAGCACCATCACCA
CCACCTCCTCCTCCATCAGCACCAGCCAGCTGCCATTGGTCAGCACAACC
AACTGGAGCCTAACGTCGCCGGGAACTACTAGCGCTATCTTGGCGGATGT
GGCTGCATCGGATGAGGATAGGAGCGGCGGGATCATTCACAACCAGTTCG
TGCAAATCTTCTTCTACGTCCTGTACGCCACGGTCTTTGTCCTGGGTGTC
TTCGGAAATGTCCTGGTTTGCTACGTAGTTCTGAGGAATCGGGCCATGCA
GACTGTGACCAATATATTCATCACGAATCTGGCCCTGTCGGACATATTGC
TCTGCGTCCTGGCGGTGCCATTTACTCCGCTTTACACGTTCATGGGTCGC
TGGGCCTTCGGCAGGAGTCTGTGCCATCTGGTGTCCTTTGCCCAGGGATG
CAGCATCTACATATCCACGCTGACCCTCACCTCGATTGCCATCGATCGGT
ACTTCGTTATCATATACCCCTTCCATCCGCGCATGAAGCTCTCCACCTGC
ATCGGGATCATAGTGAGCATCTGGGTGATAGCCCTGCTGGCCACCGTTCC
CTACGGCATGTACATGAAGATGACCAACGAGCTGGTGAACGGAACGCAGA
CAGGCAACGAGACCCTGGTGGAGGCCACTCTAATGCTAAACGGAAGCTTT
GTGGCCCAGGGATCAGGATTCATCGAGGCGCCGGACTCTACCTCGGCCAC
CCAGGCCTATATGCAGGTGATGACCGCCGGATCAACGGGACCGGAGATGC
CCTATGTGCGGGTGTACTGCGAGGAGAACTGGCCATCGGAGCAGTACCGG
AAGGTGTTCGGTGCCATCACAACCACTCTGCA
BO11089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7395-PA | 1803 | NPFR76F-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 4374 | CG7395-RB | 355..1220 | 17..882 | 4330 | 100 | Plus |
| sNPF-R-RA | 3243 | CG7395-RA | 727..1592 | 17..882 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20075050..20075915 | 882..17 | 4330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:34:35 has no hits.
BO11089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:54 Download gff for
BO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7395-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:17 Download gff for
BO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7395-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:03:03 Download gff for
BO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 721..1591 | 11..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:37:34 Download gff for
BO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 721..1591 | 11..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:37:34 Download gff for
BO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20075051..20075921 | 11..881 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:03:03 Download gff for
BO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20068151..20069021 | 11..881 | 99 | | Minus |
BO11089.complete Sequence
1834 bp assembled on 2008-01-16
GenBank Submission: FJ631994
> BO11089.complete
GAAGTTATCAGTCGACATGGCCAACTTAAGCTGGCTGAGCACCATCACCA
CCACCTCCTCCTCCATCAGCACCAGCCAGCTGCCATTGGTCAGCACAACC
AACTGGAGCCTAACGTCGCCGGGAACTACTAGCGCTATCTTGGCGGATGT
GGCTGCATCGGATGAGGATAGGAGCGGCGGGATCATTCACAACCAGTTCG
TGCAAATCTTCTTCTACGTCCTGTACGCCACGGTCTTTGTCCTGGGTGTC
TTCGGAAATGTCCTGGTTTGCTACGTAGTTCTGAGGAATCGGGCCATGCA
GACTGTGACCAATATATTCATCACGAATCTGGCCCTGTCGGACATATTGC
TCTGCGTCCTGGCGGTGCCATTTACTCCGCTTTACACGTTCATGGGTCGC
TGGGCCTTCGGCAGGAGTCTGTGCCATCTGGTGTCCTTTGCCCAGGGATG
CAGCATCTACATATCCACGCTGACCCTCACCTCGATTGCCATCGATCGGT
ACTTCGTTATCATATACCCCTTCCATCCGCGCATGAAGCTCTCCACCTGC
ATCGGGATCATAGTGAGCATCTGGGTGATAGCCCTGCTGGCCACCGTTCC
CTACGGCATGTACATGAAGATGACCAACGAGCTGGTGAACGGAACGCAGA
CAGGCAACGAGACCCTGGTGGAGGCCACTCTAATGCTAAACGGAAGCTTT
GTGGCCCAGGGATCAGGATTCATCGAGGCGCCGGACTCTACCTCGGCCAC
CCAGGCCTATATGCAGGTGATGACCGCCGGATCAACGGGACCGGAGATGC
CCTATGTGCGGGTGTACTGCGAGGAGAACTGGCCATCGGAGCAGTACCGG
AAGGTGTTCGGTGCCATCACAACCACTCTGCAGTTTGTGCTGCCCTTCTT
CATCATCTCGATTTGCTACGTGTGGATATCGGTGAAGCTAAACCAGCGGG
CCAGGGCCAAGCCGGGATCGAAATCCTCGAGACGGGAGGAGGCGGATCGG
GATCGCAAGAAGCGCACCAACCGCATGCTCATCGCCATGGTGGCGGTATT
CGGACTCAGCTGGCTGCCCATCAATGTGGTCAACATATTCGATGACTTCG
ATGACAAGTCCAACGAGTGGCGCTTCTACATCCTATTCTTCTTTGTGGCC
CACTCTATTGCCATGAGCTCCACCTGCTACAATCCCTTCCTGTACGCCTG
GCTGAACGAGAACTTCCGCAAGGAGTTCAAGCACGTGCTGCCCTGCTTTA
ATCCCTCGAACAACAACATCATCAACATCACCAGGGGCTATAATCGGAGT
GATCGGAACACCTGTGGTCCGCGACTGCATCATGGCAAGGGGGATGGTGG
CATGGGCGGTGGCAGTCTGGACGCCGACGACCAGGACGAGAACGGCATCA
CCCAGGAGACCTGTCTGCCCAAGGAGAAGCTGCTGATTATCCCCAGGGAG
CCGACTTACGGCAATGGCACGGGTGCCGTGTCGCCAATCCTTAGCGGGCG
CGGCATTAACGCCGCCCTGGTGCACGGTGGCGACCATCAGATGCACCAGC
TGCAGCCGTCACACCATCAACAGGTGGAGCTGACGAGGCGAATCCGCCGG
CGGACAGACGAGACGGACGGGGATTACCTGGACTCCGGCGACGAGCAGAC
CGTGGAGGTGCGCTTCAGCGAGACGCCGTTCGTCAGCACGGATAATACCA
CCGGGATCAGCATTCTGGAGACGAGTACGAGTCACTGCCAGGACTCGGAT
GTGATGGTCGAGCTGGGCGAGGCAATCGGCGCCGGTGGTGGGGCAGAGCT
GGGGAGGCGAATCAACGCAAGCTTTCTAGACCAT
BO11089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 1803 | CG7395-PB | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| sNPF-R-RA | 1803 | CG7395-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 4374 | CG7395-RB | 355..2154 | 17..1816 | 9000 | 100 | Plus |
| sNPF-R-RA | 3243 | CG7395-RA | 727..2526 | 17..1816 | 9000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20074116..20075915 | 1816..17 | 9000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:31:18 has no hits.
BO11089.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:28 Download gff for
BO11089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR76F-RA | 1..1803 | 17..1819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:33 Download gff for
BO11089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR76F-RA | 702..2501 | 17..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:04 Download gff for
BO11089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 727..2526 | 17..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:28 Download gff for
BO11089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR76F-RA | 696..2501 | 11..1816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:22 Download gff for
BO11089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 727..2526 | 17..1818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:22 Download gff for
BO11089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20074113..20075915 | 17..1818 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:04 Download gff for
BO11089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20067213..20069015 | 17..1818 | 99 | | Minus |
BO11089.pep Sequence
Translation from 16 to 1834
> BO11089.pep
MANLSWLSTITTTSSSISTSQLPLVSTTNWSLTSPGTTSAILADVAASDE
DRSGGIIHNQFVQIFFYVLYATVFVLGVFGNVLVCYVVLRNRAMQTVTNI
FITNLALSDILLCVLAVPFTPLYTFMGRWAFGRSLCHLVSFAQGCSIYIS
TLTLTSIAIDRYFVIIYPFHPRMKLSTCIGIIVSIWVIALLATVPYGMYM
KMTNELVNGTQTGNETLVEATLMLNGSFVAQGSGFIEAPDSTSATQAYMQ
VMTAGSTGPEMPYVRVYCEENWPSEQYRKVFGAITTTLQFVLPFFIISIC
YVWISVKLNQRARAKPGSKSSRREEADRDRKKRTNRMLIAMVAVFGLSWL
PINVVNIFDDFDDKSNEWRFYILFFFVAHSIAMSSTCYNPFLYAWLNENF
RKEFKHVLPCFNPSNNNIINITRGYNRSDRNTCGPRLHHGKGDGGMGGGS
LDADDQDENGITQETCLPKEKLLIIPREPTYGNGTGAVSPILSGRGINAA
LVHGGDHQMHQLQPSHHQQVELTRRIRRRTDETDGDYLDSGDEQTVEVRF
SETPFVSTDNTTGISILETSTSHCQDSDVMVELGEAIGAGGGAELGRRIN
ASFLDH
BO11089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-PB | 600 | CG7395-PB | 1..600 | 1..600 | 3142 | 100 | Plus |
| sNPF-R-PA | 600 | CG7395-PA | 1..600 | 1..600 | 3142 | 100 | Plus |
| NPFR-PD | 489 | CG1147-PD | 92..489 | 69..481 | 518 | 30.6 | Plus |
| NPFR-PA | 485 | CG1147-PA | 92..438 | 69..450 | 516 | 31.6 | Plus |
| NPFR-PC | 462 | CG1147-PC | 92..381 | 69..401 | 486 | 32.1 | Plus |
