Clone Sequence Records
BO11092.3prime Sequence
832 bp (830 high quality bases) assembled on 2006-04-19
> BO11092.3prime
ATGGTCTAGAAAGCTTGCGACAATCTTAATGGGCACATCGATTAGACAGT
CTGTTTCCAGTCGCCCCAGCGTCTTCTTTACGCGCAGGGCAGTCAGCCGA
ACGGTGGGATTCGGGTGCCAGCACTCCTGCATGATCTTGGATACGGTGGC
GAGTACATCATCCTCCTGCCAGCGTGATGGTATCGGCGGCCGGAAACCCT
TTACGCACACAACAGCGTGCATGTCCTCGAACGTGGGATCCGAGGGCACC
ACATCGTGATAGGGCAGGGCGTAGTCCTCGCAGGTGGTCGTCTTGGTGCC
CGATACGGGTGTGTAGCAGCGACGGGTCATCTCCCACAGAACGAGACCCA
CTGAATACATATCAGCCCGTTTGAACTCTTCAAACTGCTTGGGATCCAGC
TGCTGACTCAATACTTCTGGAGCCATGTAGCGTCGAGTGCCGACACGTGG
ATTCTGTGCAATGTGAATGACATCCAGTTCCGAGTTGTACTTCACTGCCA
GCCCGAAGTCAGCAATAGCGCACTGCCCATTCCGCTTGACCAAAATGTTC
TTGCTCTTGATATCGCGATGAGCGATAGCTGGTTTGCCAGGGGTTCCGAA
AATCTCGTCGTGCAGGTGGGCCAATCCGGAGGCCAGCGAAAACGCCAGCA
ATTGCAGCTTCTGCGGATTGATCACCGACATTGAGAGGTAATCGTGTAGG
CTGCCCATCTCGTGGTAGTCGGTGATCAGCAACATCTGTGTCCAGCTACC
ATTACCCTTGATATCGGCGGCAATGAAGCCCAAGATATTGTCGTGTCGCA
TCAGCACTGTCTGATAGATTTCAGTCTCGCGG
BO11092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14026-PC | 1728 | tkv-RC | 912..1725 | 832..19 | 4070 | 100 | Minus |
CG14026-PB | 1596 | tkv-RB | 780..1593 | 832..19 | 4070 | 100 | Minus |
CG14026-PD | 1530 | tkv-RD | 714..1527 | 832..19 | 4070 | 100 | Minus |
CG14026-PA | 1692 | tkv-RA | 876..1689 | 832..19 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tkv-RA | 2846 | CG14026-RA | 937..1750 | 832..19 | 4070 | 100 | Minus |
tkv-RD | 3616 | CG14026-RD | 1707..2520 | 832..19 | 4070 | 100 | Minus |
tkv-RB | 3129 | CG14026-RB | 1220..2033 | 832..19 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5220096..5220909 | 19..832 | 4070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:56:39 has no hits.
BO11092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:57:59 Download gff for
BO11092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-PC | 912..1728 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:25 Download gff for
BO11092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14026-PA | 876..1692 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:30:56 Download gff for
BO11092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RB | 1220..2042 | 8..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:09 Download gff for
BO11092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RB | 1220..2042 | 8..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:09 Download gff for
BO11092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5220087..5220909 | 8..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:30:56 Download gff for
BO11092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5220087..5220909 | 8..832 | 99 | | Plus |
BO11092.5prime Sequence
899 bp (777 high quality bases) assembled on 2006-04-19
> BO11092.5prime
GAAGTTATCAGTCGACATGGCGCCGAAATCCAGAAAGAAGAAGGCTCATG
CCCGCTCCCTAACCTGCTACTGCGATGGCAGTTGTCCGGACAATGTAAGC
AATGGAACCTGCGAGACCAGACCCGGTGGCAGTTGCTTCAGCGCAGTCCA
ACAGCTTTACGATGAGACGACCGGGATGTACGAGGAGGAGCGTACATATG
GATGCATGCCTCCCGAAGACAACGGTGGTTTTCTCATGTGCAAGGTAGCC
GCTGTACCCCACCTGCATGGCAAGAACATTGTCTGCTGCGACAAGGAGGA
CTTCTGCAACCGTGACCTGTACCCCACCTACACACCCAAGCTGACCACAC
CAGCGCCGGATTTGCCCGTGAGCAGCGAGTCCCTACACACGCTGGCCGTC
TTTGGCTCCATCATCATCTCCCTGTCCGTGTTTATGCTGATCGTGGCTAG
CTTATGTTTCACCTACAAGCGACGCGAGAAGCTGCGCAAGCAGCCACGTC
TCATCAACTCAATGTGCAACTCACAGCTGTCGCCTTTGTCACAACTGGTG
GAACAGAGTTCGGGCTCCGGATCGGGATTACCATTGCTGGTGCAAAGAAC
CATTGCCAAGCAGATTCAGATGGTGCGACTGGTGGGCAAAGGACGATATG
GCGAGGTCTGGCTGGCCAAATGGCGCGATGAGCGGGTGGCCGTCAAGACC
TTCTTTACGACCGAAGAGGCTTCTTGGTTCCGCGAGACTGAAATCTATCA
GACAGTGCTGATGCGACACGACAATATCTTGGGCTTCATTGCCGCCGATA
TCAAGGGTAATGGTAGCTGGACACAGATGTTGCTGATCACCGACTACCAC
GAGATGGGCAGCCTACACGATTACCTCTCNATGTCGGTGATCAATCCGC
BO11092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14026-PD | 1530 | tkv-RD | 1..883 | 17..899 | 4396 | 99.8 | Plus |
CG14026-PC | 1728 | tkv-RC | 230..1081 | 48..899 | 4241 | 99.8 | Plus |
CG14026-PB | 1596 | tkv-RB | 98..949 | 48..899 | 4241 | 99.8 | Plus |
CG14026-PA | 1692 | tkv-RA | 194..1045 | 48..899 | 4241 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tkv-RD | 3616 | CG14026-RD | 991..1876 | 14..899 | 4419 | 99.9 | Plus |
tkv-RA | 2846 | CG14026-RA | 255..1106 | 48..899 | 4249 | 99.9 | Plus |
tkv-RB | 3129 | CG14026-RB | 538..1389 | 48..899 | 4249 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5220740..5221401 | 899..238 | 3299 | 99.8 | Minus |
2L | 23513712 | 2L | 5221463..5221651 | 238..50 | 945 | 100 | Minus |
2R | 25286936 | 2R | 8959513..8959637 | 686..810 | 190 | 76.8 | Plus |
2L | 23513712 | 2L | 5236336..5236372 | 50..14 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:14:10 has no hits.
BO11092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:00 Download gff for
BO11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-PD | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:26 Download gff for
BO11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14026-PD | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:07:53 Download gff for
BO11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RD | 983..1876 | 3..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:03 Download gff for
BO11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RD | 983..1876 | 3..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:03 Download gff for
BO11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5220740..5221400 | 239..899 | 99 | <- | Minus |
2L | 5221463..5221650 | 51..238 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:07:53 Download gff for
BO11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5220740..5221400 | 239..899 | 99 | <- | Minus |
arm_2L | 5221463..5221650 | 51..238 | 100 | <- | Minus |
BO11092.complete Sequence
1561 bp (1561 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ631996
> BO11092.complete
GAAGTTATCAGTCGACATGGCGCCGAAATCCAGAAAGAAGAAGGCTCATG
CCCGCTCCCTAACCTGCTACTGCGATGGCAGTTGTCCGGACAATGTAAGC
AATGGAACCTGCGAGACCAGACCCGGTGGCAGTTGCTTCAGCGCAGTCCA
ACAGCTTTACGATGAGACGACCGGGATGTACGAGGAGGAGCGTACATATG
GATGCATGCCTCCCGAAGACAACGGTGGTTTTCTCATGTGCAAGGTAGCC
GCTGTACCCCACCTGCATGGCAAGAACATTGTCTGCTGCGACAAGGAGGA
CTTCTGCAACCGTGACCTGTACCCCACCTACACACCCAAGCTGACCACAC
CAGCGCCGGATTTGCCCGTGAGCAGCGAGTCCCTACACACGCTGGCCGTC
TTTGGCTCCATCATCATCTCCCTGTCCGTGTTTATGCTGATCGTGGCTAG
CTTATGTTTCACCTACAAGCGACGCGAGAAGCTGCGCAAGCAGCCACGTC
TCATCAACTCAATGTGCAACTCACAGCTGTCGCCTTTGTCACAACTGGTG
GAACAGAGTTCGGGCTCCGGATCGGGATTACCATTGCTGGTGCAAAGAAC
CATTGCCAAGCAGATTCAGATGGTGCGACTGGTGGGCAAAGGACGATATG
GCGAGGTCTGGCTGGCCAAATGGCGCGATGAGCGGGTGGCCGTCAAGACC
TTCTTTACGACCGAAGAGGCTTCTTGGTTCCGCGAGACTGAAATCTATCA
GACAGTGCTGATGCGACACGACAATATCTTGGGCTTCATTGCCGCCGATA
TCAAGGGTAATGGTAGCTGGACACAGATGTTGCTGATCACCGACTACCAC
GAGATGGGCAGCCTACACGATTACCTCTCAATGTCGGTGATCAATCCGCA
GAAGCTGCAATTGCTGGCGTTTTCGCTGGCCTCCGGATTGGCCCACCTGC
ACGACGAGATTTTCGGAACCCCTGGCAAACCAGCTATCGCTCATCGCGAT
ATCAAGAGCAAGAACATTTTGGTCAAGCGGAATGGGCAGTGCGCTATTGC
TGACTTCGGGCTGGCAGTGAAGTACAACTCGGAACTGGATGTCATTCACA
TTGCACAGAATCCACGTGTCGGCACTCGACGCTACATGGCTCCAGAAGTA
TTGAGTCAGCAGCTGGATCCCAAGCAGTTTGAAGAGTTCAAACGGGCTGA
TATGTATTCAGTGGGTCTCGTTCTGTGGGAGATGACCCGTCGCTGCTACA
CACCCGTATCGGGCACCAAGACGACCACCTGCGAGGACTACGCCCTGCCC
TATCACGATGTGGTGCCCTCGGATCCCACGTTCGAGGACATGCACGCTGT
TGTGTGCGTAAAGGGTTTCCGGCCGCCGATACCATCACGCTGGCAGGAGG
ATGATGTACTCGCCACCGTATCCAAGATCATGCAGGAGTGCTGGCACCCG
AATCCCACCGTTCGGCTGACTGCCCTGCGCGTAAAGAAGACGCTGGGGCG
ACTGGAAACAGACTGTCTAATCGATGTGCCCATTAAGATTGTCGCAAGCT
TTCTAGACCAT
BO11092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tkv-RD | 1530 | CG14026-PD | 1..1527 | 17..1543 | 7635 | 100 | Plus |
tkv-RA | 1692 | CG14026-PA | 194..1689 | 48..1543 | 7480 | 100 | Plus |
tkv-RB | 1596 | CG14026-PB | 98..1593 | 48..1543 | 7480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tkv-RD | 3616 | CG14026-RD | 991..2520 | 14..1543 | 7650 | 100 | Plus |
tkv-RA | 2846 | CG14026-RA | 255..1750 | 48..1543 | 7480 | 100 | Plus |
tkv-RB | 3129 | CG14026-RB | 538..2033 | 48..1543 | 7480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5220096..5221401 | 1543..238 | 6530 | 100 | Minus |
2L | 23513712 | 2L | 5221463..5221651 | 238..50 | 945 | 100 | Minus |
2R | 25286936 | 2R | 8959513..8959637 | 686..810 | 190 | 76.8 | Plus |
2L | 23513712 | 2L | 5236336..5236372 | 50..14 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:38:21 has no hits.
BO11092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:33 Download gff for
BO11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RD | 1..1530 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:21 Download gff for
BO11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RD | 990..2516 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:45 Download gff for
BO11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RD | 994..2520 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:33 Download gff for
BO11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RD | 979..2525 | 3..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:04 Download gff for
BO11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tkv-RD | 994..2520 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:04 Download gff for
BO11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5220094..5221400 | 239..1545 | 99 | <- | Minus |
2L | 5221463..5221650 | 51..238 | 100 | <- | Minus |
2L | 5236336..5236369 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:45 Download gff for
BO11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5220094..5221400 | 239..1545 | 99 | <- | Minus |
arm_2L | 5221463..5221650 | 51..238 | 100 | <- | Minus |
arm_2L | 5236336..5236369 | 17..50 | 100 | | Minus |
BO11092.pep Sequence
Translation from 16 to 1561
> BO11092.pep
MAPKSRKKKAHARSLTCYCDGSCPDNVSNGTCETRPGGSCFSAVQQLYDE
TTGMYEEERTYGCMPPEDNGGFLMCKVAAVPHLHGKNIVCCDKEDFCNRD
LYPTYTPKLTTPAPDLPVSSESLHTLAVFGSIIISLSVFMLIVASLCFTY
KRREKLRKQPRLINSMCNSQLSPLSQLVEQSSGSGSGLPLLVQRTIAKQI
QMVRLVGKGRYGEVWLAKWRDERVAVKTFFTTEEASWFRETEIYQTVLMR
HDNILGFIAADIKGNGSWTQMLLITDYHEMGSLHDYLSMSVINPQKLQLL
AFSLASGLAHLHDEIFGTPGKPAIAHRDIKSKNILVKRNGQCAIADFGLA
VKYNSELDVIHIAQNPRVGTRRYMAPEVLSQQLDPKQFEEFKRADMYSVG
LVLWEMTRRCYTPVSGTKTTTCEDYALPYHDVVPSDPTFEDMHAVVCVKG
FRPPIPSRWQEDDVLATVSKIMQECWHPNPTVRLTALRVKKTLGRLETDC
LIDVPIKIVASFLDH
BO11092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tkv-PD | 509 | CG14026-PD | 1..509 | 1..509 | 2707 | 100 | Plus |
tkv-PA | 563 | CG14026-PA | 61..563 | 7..509 | 2652 | 99.2 | Plus |
tkv-PB | 531 | CG14026-PB | 29..531 | 7..509 | 2652 | 99.2 | Plus |
tkv-PC | 575 | CG14026-PC | 73..575 | 7..509 | 2652 | 99.2 | Plus |
babo-PB | 622 | CG8224-PB | 115..617 | 1..499 | 1046 | 43.5 | Plus |