Clone Sequence Records
BO11095.3prime Sequence
948 bp (795 high quality bases) assembled on 2006-04-19
> BO11095.3prime
ATGGTCTAGAAAGCTTGCGCCCAAGATCTTTTTGAAATAGCTAACCGTTT
CCGGTTTGGTTAGCGAGCGTCGTCGATTTGGCTTGAATGGCGCCTCGGTC
TCCTCCAGGAAGTTGTGTCGCGTTGTGGCCGCCTCGGTCTTCAAATGGCC
CTCCTCGTCCTCCTCCTCCTCCTCGGGGCTGCCCATGCCGTTGTTGTCCA
CCTTGAAGGATCCCTGATTCACTCGCGGATATCTGAACTCCCTGACTGGC
TTCGGAATGGATGTTGTTGTTGTTGCTGCTGCTGTTGTTGTTGCTGCAGC
TGCTGTGGCATTCGATTTGATTTCATTAGCTGCGGCTGCTCTGGTAGCAG
TAGTGGTTGCTGCTGCTGCTGGTGGCGCTTCACTGGCAATTACCGTTGCT
GCTGATGTTGCTGCGGTGTCTTCAGTTACTTTCACGCTTGTTGTCACCTC
CACAGCTGCACCTGTTGTCGCTGTCACGGTTGATGTTGCCACAGTGTCAG
CGACTGTTGCAGCTGATGTTGTTGCTGCTGCTGTTGCTGCTGTCAGTTCC
TTCGATGACGTGACTGTTGATGGCTGCACTTCCACTTTGGTCGATGTTTC
TGCTGCTGCTGCTGCTGGTGTTGTTGCTGTTGCTGCTGCTGTTGTCGTAC
TGGACGTTGTTGTCGCTCGTGTTGTTGTGGTCGCATGCTCGCTGGCATGT
TTGGCCGGCGGCACGTAGTGCGACTTCACCAGCAGCATTGGCGGTATAAA
GCGCGTATTGTCGGCGGACTCGTTGACGTGCGTTGCATGTTGCTGCTGNC
ACGTGGCGCCTTCGTGCAGTATCTGCTGTTGTTGGTGGTGTTGCTGCTGC
GAGGGATGTATGGGATGTGCCATGTTGTTGCTGTTGCTCTTGTCCGTGGG
CGTGGCATGGCTAGTTGTTTGTGCTGTCGCTGCTGCTGCTGTGCTCGT
BO11095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-PA | 2622 | CG15765-RA | 1690..2619 | 948..19 | 4556 | 99.5 | Minus |
| CG14023-PA | 6804 | CG14023-RA | 4452..4491 | 543..504 | 150 | 95 | Minus |
| CG6026-PA | 4629 | CG6026-RA | 1312..1340 | 542..514 | 145 | 100 | Minus |
| CG10572-PA | 1365 | Cdk8-RA | 1115..1142 | 544..517 | 140 | 100 | Minus |
| CG11146-PA | 4251 | CG11146-RA | 116..143 | 542..515 | 140 | 100 | Minus |
| CG13675-PA | 852 | CG13675-RA | 510..536 | 543..517 | 135 | 100 | Minus |
| CG32393-PA | 1029 | dikar-RA | 951..977 | 543..517 | 135 | 100 | Minus |
| CG32393-PB | 1029 | dikar-RB | 951..977 | 543..517 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-RB | 4315 | CG15765-RB | 1760..2689 | 948..19 | 4594 | 99.6 | Minus |
| CG15765-RA | 3138 | CG15765-RA | 1833..2762 | 948..19 | 4594 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5838268..5839197 | 948..19 | 4594 | 99.6 | Minus |
Blast to na_te.dros performed 2015-01-31 17:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6664..7109 | 745..299 | 468 | 61.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2895 | 725..106 | 467 | 57 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2989 | 942..340 | 461 | 58.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2933 | 849..240 | 430 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2666 | 644..264 | 416 | 61.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2658 | 606..260 | 400 | 61.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7198 | 694..258 | 396 | 59.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..7108 | 653..246 | 393 | 60 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6516..6919 | 662..258 | 382 | 59.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..7220 | 555..48 | 370 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2637 | 572..260 | 369 | 61.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2499 | 427..260 | 362 | 68.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2616 | 609..260 | 350 | 59 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2945 | 945..261 | 347 | 57 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..7040 | 543..243 | 342 | 60.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..7182 | 677..331 | 337 | 61.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6950 | 488..260 | 322 | 62.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6833 | 674..260 | 308 | 56.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2637 | 521..178 | 306 | 58.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..3064 | 942..301 | 304 | 55.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6421..6872 | 719..260 | 297 | 58.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..7055 | 626..263 | 292 | 57.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..7199 | 942..479 | 291 | 57.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..3004 | 677..457 | 288 | 61.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2454 | 413..260 | 255 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..7421 | 945..287 | 247 | 55.6 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1024..1160 | 409..260 | 235 | 66 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..7217 | 942..504 | 234 | 58.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6779 | 362..260 | 219 | 70.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1005..1145 | 599..455 | 219 | 64.1 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1154 | 620..515 | 217 | 72.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..7180 | 917..453 | 215 | 55.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7199 | 890..395 | 211 | 56.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1588 | 573..502 | 180 | 72.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1140 | 892..815 | 162 | 70.9 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3253..3381 | 412..283 | 161 | 59.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1177 | 542..437 | 158 | 62.3 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 835..1012 | 669..499 | 154 | 57.8 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1012 | 634..511 | 154 | 62.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1165 | 577..468 | 145 | 64.5 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3322 | 614..505 | 145 | 66.4 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 87..196 | 565..456 | 144 | 61.3 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9117..9226 | 565..456 | 144 | 61.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1068..1154 | 430..350 | 143 | 65.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1565 | 551..504 | 138 | 79.2 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6594..6671 | 539..465 | 138 | 70.9 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..8014 | 539..480 | 138 | 70 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8050..8127 | 539..465 | 138 | 70.9 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9458 | 539..480 | 138 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..7222 | 942..578 | 137 | 56.3 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..202 | 406..324 | 136 | 62.7 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9232 | 406..324 | 136 | 62.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1550..1586 | 859..823 | 131 | 83.8 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 632..724 | 453..544 | 129 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1391..1587 | 647..455 | 128 | 56.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1036..1116 | 873..788 | 120 | 66.7 | Minus |
| BS | 5142 | BS BS 5142bp | 1831..2137 | 620..322 | 118 | 55.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1141 | 906..823 | 117 | 64 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3296..3347 | 850..797 | 114 | 70.4 | Minus |
BO11095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:04 Download gff for
BO11095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-PA | 1690..2622 | 15..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:32 Download gff for
BO11095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-PA | 1690..2622 | 15..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:42:31 Download gff for
BO11095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 1833..2767 | 14..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:54:03 Download gff for
BO11095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 1833..2767 | 14..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:03 Download gff for
BO11095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5838268..5839202 | 14..948 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:31 Download gff for
BO11095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5732301..5733235 | 14..948 | 99 | | Minus |
BO11095.5prime Sequence
873 bp (833 high quality bases) assembled on 2006-04-19
> BO11095.5prime
GAAGTTATCAGTCGACATGATGCGACCTCGCTGTCTGGTGTCCTTTTTGG
GCATCTGCCTGGTAATCAGCCTGGGAATGCGTTGCGATGCTCGAGCGGTG
AACGTGAGCAACACCTGGACGATGCCGCAAGAGGGTCTGAACGTCTTTTA
TCGCTTCTTCCGCGATCGCATATCCTGGTTTGAGGCCGATGCCGTCTGTC
AATTTCATCACGCCAATCTAGTGACGGTCGACAACAGTTTTCAATTCGAT
GCAACGCGCGACCTGCTGAGGGAATTGGATGTGAACGACATCGTTTGGAT
TGGTCTCATGCGACCGCAGAACTCGGATCGTTTTATGTGGTCGAACTCGC
GTCCCTTGGTGGCAGATACTGGTTACTGGGCCGAATCCCTACCACTGATG
GATGCTCCGCTCTGCGCCGTAATCGATCCCATTCGAGATTACCGCTGGCA
CGCTCTGCGCTGCGGTGGACCCGAAACGGCCTCCTTCCTTTGCGAAATGC
CAGTTCCCAGCTGGGCGGATGCTTGCATACTGAAGGACATGCCCAATTTG
ACCATGCAATACATGGCGGATACGGCCAGCATCGAGCTGATCCGCAATTG
CCAGGAGGAGGGACTGCTGCGACACACCTGCAAGGGCAAGGAGGATCGTG
AGCGTGCCATTCGACAGCTGATCTGTCCCAAGGAGCGTTTGGAGGCGCAG
CGCATCAACGACATCACAAACTCGCACTTCAAGTCGCTGCAGATCATCAA
CAACATCCACACTGATAACAAGGAGAATAACGACATCGATCTGCTGCCCA
ACTATGGCCGCCGATCCGGAATGGCCATCAACATCGAGGTGGCGCCACCA
GTGCCGCCCGTTTCGGTTCCCGG
BO11095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-PA | 2622 | CG15765-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-RB | 4315 | CG15765-RB | 71..927 | 17..873 | 4285 | 100 | Plus |
| CG15765-RA | 3138 | CG15765-RA | 144..1000 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5837204..5837435 | 642..873 | 1160 | 100 | Plus |
| X | 23542271 | X | 5836730..5836890 | 343..503 | 805 | 100 | Plus |
| X | 23542271 | X | 5836973..5837115 | 502..644 | 715 | 100 | Plus |
| X | 23542271 | X | 5834350..5834480 | 97..227 | 655 | 100 | Plus |
| X | 23542271 | X | 5836040..5836156 | 227..343 | 585 | 100 | Plus |
| X | 23542271 | X | 5819122..5819204 | 17..99 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:19:14 has no hits.
BO11095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:05 Download gff for
BO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:34 Download gff for
BO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:35:56 Download gff for
BO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 144..1000 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:11:33 Download gff for
BO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 144..1000 | 17..873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:11:33 Download gff for
BO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5819122..5819202 | 17..97 | 100 | -> | Plus |
| X | 5834351..5834480 | 98..227 | 100 | -> | Plus |
| X | 5836041..5836155 | 228..342 | 100 | -> | Plus |
| X | 5836730..5836890 | 343..503 | 100 | -> | Plus |
| X | 5836975..5837114 | 504..643 | 100 | -> | Plus |
| X | 5837206..5837435 | 644..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:35:56 Download gff for
BO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5713155..5713235 | 17..97 | 100 | -> | Plus |
| arm_X | 5728384..5728513 | 98..227 | 100 | -> | Plus |
| arm_X | 5730074..5730188 | 228..342 | 100 | -> | Plus |
| arm_X | 5730763..5730923 | 343..503 | 100 | -> | Plus |
| arm_X | 5731008..5731147 | 504..643 | 100 | -> | Plus |
| arm_X | 5731239..5731468 | 644..873 | 100 | | Plus |
BO11095.complete Sequence
2653 bp (2653 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631997
> BO11095.complete
GAAGTTATCAGTCGACATGATGCGACCTCGCTGTCTGGTGTCCTTTTTGG
GCATCTGCCTGGTAATCAGCCTGGGAATGCGTTGCGATGCTCGAGCGGTG
AACGTGAGCAACACCTGGACGATGCCGCAAGAGGGTCTGAACGTCTTTTA
TCGCTTCTTCCGCGATCGCATATCCTGGTTTGAGGCCGATGCCGTCTGTC
AATTTCATCACGCCAATCTAGTGACGGTCGACAACAGTTTTCAATTCGAT
GCAACGCGCGACCTGCTGAGGGAATTGGATGTGAACGACATCGTTTGGAT
TGGTCTCATGCGACCGCAGAACTCGGATCGTTTTATGTGGTCGAACTCGC
GTCCCTTGGTGGCAGATACTGGTTACTGGGCCGAATCCCTACCACTGATG
GATGCTCCGCTCTGCGCCGTAATCGATCCCATTCGAGATTACCGCTGGCA
CGCTCTGCGCTGCGGTGGACCCGAAACGGCCTCCTTCCTTTGCGAAATGC
CAGTTCCCAGCTGGGCGGATGCTTGCATACTGAAGGACATGCCCAATTTG
ACCATGCAATACATGGCGGATACGGCCAGCATCGAGCTGATCCGCAATTG
CCAGGAGGAGGGACTGCTGCGACACACCTGCAAGGGCAAGGAGGATCGTG
AGCGTGCCATTCGACAGCTGATCTGTCCCAAGGAGCGTTTGGAGGCGCAG
CGCATCAACGACATCACAAACTCGCACTTCAAGTCGCTGCAGATCATCAA
CAACATCCACACTGATAACAAGGAGAATAACGACATCGATCTGCTGCCCA
ACTATGGCCGCCGATCCGGAATGGCCATCAACATCGAGGTGGCGCCACCA
GTGCCGCCCGTTTCGGTTCCCGGATTGGGAGAGCTGATGCAGGCGGATGC
TCCGGGCGCCGTATCACTGTCCGGACTGTATCGCATACCTGACCTGGTGC
CCAAGCCTGTGAAGAAGGCGGCCAAGAAGGTGATCACACCGGACTTTGCC
AAGAAGCTGCAGGGTAGCCATCAGCAGCAGCACAACCAGCAGCAGCAGCA
ACAGCAGCAACAGAAGTCGCGCAAGTCGTTGGTGCACCAGCACGAGGAGG
AACTGATGATGGGCGACCAGCCGGCACTGAGTGAGGAGCAACTGCCTCCG
GGTATGGGAATGGGCCTCGGTATTCGAATGCCCCTCAACGAGGATGACAG
CAATAGCGATGCCTCCAATGAGATATTCGAACATTTGCCGCACAAGAAGA
AGATCCTGCCGCAGGATCTGCGCACCATGGCGCCAATTCCTGAAGCCAAA
TCGCCAGCGATGACAACAACTACACTGAAGACAACCACTTTGGCGACACC
GGCAACAGCAACAACCACTACACCAGCAACAACGACAACGGCGACGGCAG
CAACTGAAGTGGTGACCACACCGAAAGCAGTGGACACCACAAGTTCACAG
GCGCCGGCAACAACAACGCGGCCAACAACAACGGTTAGAACCACCACGAT
TACAACCACCACTACAACAGCAACAACTACGCCCAAAACGGAAGAGACAA
CAACAACAACGACTAAGAAACCAGAGCCAACAACCATGGTAGCACCACGA
ACAACAAAAACATCAGCAATCGAAGCGGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAACTGGCACAACAACAGTAGCAACATCCGCTGAAACACCAACAA
CAACAACGAGCACAGCAGCAGCAGCGACAGCAACAACAACTAGCCATGCC
ACGCCCACGGACAAGAGCAACAGCAACAACATGGCACATCCCATACATCC
CTCGCAGCAGCAACACCACCAACAACAGCAGATACTGCACGAAGGCGCCA
CGTTGCAGCAGCAACATGCAACGCACGTCAACGAGTCCGCCGACAATACG
CGCTTTATACCGCCAATGCTGCTGGTGAAGTCGCACTACGTGCCGCCGGC
CAAACATGCCAGCGAGCATGCGACCACAACAACACGAGCGACAACAACGT
CCAGTACGACAACAGCAGCAGCAACAGCAACAACACCAGCAGCAGCAGCA
GCAGAAACATCGACCAAAGTGGAAGTGCAGCCATCAACAGTCACGTCATC
GAAGGAACTGACAGCAGCAACAGCAGCAGCAACAACATCAGCTGCAACAG
TCGCTGACACTGTGGCAACATCAACCGTGACAGCGACAACAGGTGCAGCT
GTGGAGGTGACAACAAGCGTGAAAGTAACTGAAGACACCGCAGCAACATC
AGCAGCAACGGTAATTGCCAGTGAAGCGCCACCAGCAGCAGCAGCAACCA
CTACTGCTACCAGAGCAGCCGCAGCTAATGAAATCAAATCGAATGCCACA
GCAGCTGCAGCAACAACAACAGCAGCAGCAACAACAACAACATCCATTCC
GAAGCCAGTCAGGGAGTTCAGATATCCGCGAGTGAATCAGGGATCCTTCA
AGGTGGACAACAACGGCATGGGCAGCCCCGAGGAGGAGGAGGAGGACGAG
GAGGGCCATTTGAAGACCGAGGCGGCCACAACGCGACACAACTTCCTGGA
GGAGACCGAGGCGCCATTCAAGCCAAATCGACGACGCTCGCTAACCAAAC
CGGAAACGGTTAGCTATTTCAAAAAGATCTTGGGCGCAAGCTTTCTAGAC
CAT
BO11095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-RB | 2622 | CG15765-PB | 1..2619 | 17..2635 | 13095 | 100 | Plus |
| CG15765-RA | 2622 | CG15765-PA | 1..2619 | 17..2635 | 13095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-RB | 4315 | CG15765-RB | 71..2689 | 17..2635 | 13095 | 100 | Plus |
| CG15765-RA | 3138 | CG15765-RA | 144..2762 | 17..2635 | 13095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5837204..5839197 | 642..2635 | 9970 | 100 | Plus |
| X | 23542271 | X | 5836730..5836890 | 343..503 | 805 | 100 | Plus |
| X | 23542271 | X | 5836973..5837115 | 502..644 | 715 | 100 | Plus |
| X | 23542271 | X | 5834350..5834480 | 97..227 | 655 | 100 | Plus |
| X | 23542271 | X | 5836040..5836156 | 227..343 | 585 | 100 | Plus |
| X | 23542271 | X | 5819122..5819204 | 17..99 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2149..3035 | 1348..2249 | 693 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2138..2998 | 1476..2383 | 661 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..3032 | 1344..2083 | 601 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..3064 | 1591..2353 | 582 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2990 | 1688..2393 | 544 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..3004 | 1609..2323 | 533 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6431..7109 | 1692..2355 | 495 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2999 | 1020..1718 | 490 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2876 | 1279..1837 | 488 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..3338 | 1451..2478 | 485 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2999 | 1384..2069 | 473 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1980..2895 | 1645..2548 | 468 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2473..2989 | 1230..1738 | 441 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2933 | 1805..2414 | 437 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6418..7217 | 1331..2150 | 436 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2945 | 1652..2393 | 420 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2666 | 2010..2390 | 416 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7137 | 1505..1922 | 416 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..7091 | 1455..1823 | 406 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2658 | 2048..2394 | 400 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6414..7198 | 1609..2396 | 397 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..7108 | 2001..2408 | 393 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6380..7421 | 1335..2367 | 383 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6516..6919 | 1992..2396 | 382 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6399..7182 | 1537..2323 | 377 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..7220 | 2099..2606 | 370 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2637 | 2082..2394 | 369 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2499 | 2227..2394 | 362 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2616 | 2045..2394 | 350 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..7040 | 2111..2411 | 342 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..7562 | 1347..2190 | 332 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6950 | 2166..2394 | 322 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6833 | 1980..2394 | 308 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2637 | 2133..2476 | 306 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6421..6872 | 1935..2394 | 297 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7209 | 1286..1768 | 293 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..7055 | 2028..2391 | 292 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7199 | 1242..1740 | 278 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7087 | 1415..1787 | 276 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..3198 | 1348..1781 | 264 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2454 | 2241..2394 | 255 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6419..7199 | 1458..2259 | 246 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6539..7407 | 1019..1866 | 242 | 52.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7199 | 1712..2175 | 242 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..3034 | 1026..1465 | 237 | 54.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1024..1160 | 2245..2394 | 235 | 66 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1005..1145 | 2055..2199 | 219 | 64.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1154 | 2034..2139 | 217 | 72.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..7180 | 1737..2201 | 215 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2999 | 1019..1646 | 211 | 53.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1588 | 2081..2152 | 180 | 72.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1140 | 1762..1839 | 162 | 70.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3253..3381 | 2242..2371 | 161 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1177 | 2112..2217 | 158 | 62.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 835..1012 | 1985..2155 | 154 | 57.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1012 | 2020..2143 | 154 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1191..1577 | 1466..1843 | 147 | 53.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1165 | 2077..2186 | 145 | 64.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3322 | 2040..2149 | 145 | 66.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 87..196 | 2089..2198 | 144 | 61.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9117..9226 | 2089..2198 | 144 | 61.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1068..1154 | 2224..2304 | 143 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1292..1586 | 1542..1831 | 142 | 55.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8889..8994 | 1306..1414 | 141 | 61.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6594..6671 | 2115..2189 | 138 | 70.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..8014 | 2115..2174 | 138 | 70 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2630..2952 | 1508..1827 | 138 | 54.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8050..8127 | 2115..2189 | 138 | 70.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9458 | 2115..2174 | 138 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1165 | 1275..1403 | 137 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1155 | 1368..1468 | 136 | 59.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..202 | 2248..2330 | 136 | 62.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9232 | 2248..2330 | 136 | 62.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1036..1116 | 1781..1866 | 129 | 67.8 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 632..724 | 2201..2110 | 129 | 61.3 | Minus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 527..598 | 1333..1401 | 119 | 65.3 | Plus |
| BS | 5142 | BS BS 5142bp | 1831..2137 | 2034..2332 | 118 | 55.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1141 | 1748..1831 | 117 | 64 | Plus |
BO11095.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:20 Download gff for
BO11095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 1..2622 | 17..2639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:26 Download gff for
BO11095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 139..2757 | 17..2637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:55 Download gff for
BO11095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 144..2762 | 17..2637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:21 Download gff for
BO11095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 139..2762 | 17..2640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:51 Download gff for
BO11095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 144..2762 | 17..2637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:51 Download gff for
BO11095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5836975..5837114 | 504..643 | 100 | -> | Plus |
| X | 5836730..5836890 | 343..503 | 100 | -> | Plus |
| X | 5819122..5819202 | 17..97 | 100 | -> | Plus |
| X | 5834351..5834480 | 98..227 | 100 | -> | Plus |
| X | 5836041..5836155 | 228..342 | 100 | -> | Plus |
| X | 5837206..5839197 | 644..2637 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:55 Download gff for
BO11095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5713155..5713235 | 17..97 | 100 | -> | Plus |
| arm_X | 5728384..5728513 | 98..227 | 100 | -> | Plus |
| arm_X | 5730074..5730188 | 228..342 | 100 | -> | Plus |
| arm_X | 5730763..5730923 | 343..503 | 100 | -> | Plus |
| arm_X | 5731008..5731147 | 504..643 | 100 | -> | Plus |
| arm_X | 5731239..5733230 | 644..2637 | 99 | | Plus |
BO11095.pep Sequence
Translation from 16 to 2653
> BO11095.pep
MMRPRCLVSFLGICLVISLGMRCDARAVNVSNTWTMPQEGLNVFYRFFRD
RISWFEADAVCQFHHANLVTVDNSFQFDATRDLLRELDVNDIVWIGLMRP
QNSDRFMWSNSRPLVADTGYWAESLPLMDAPLCAVIDPIRDYRWHALRCG
GPETASFLCEMPVPSWADACILKDMPNLTMQYMADTASIELIRNCQEEGL
LRHTCKGKEDRERAIRQLICPKERLEAQRINDITNSHFKSLQIINNIHTD
NKENNDIDLLPNYGRRSGMAINIEVAPPVPPVSVPGLGELMQADAPGAVS
LSGLYRIPDLVPKPVKKAAKKVITPDFAKKLQGSHQQQHNQQQQQQQQQK
SRKSLVHQHEEELMMGDQPALSEEQLPPGMGMGLGIRMPLNEDDSNSDAS
NEIFEHLPHKKKILPQDLRTMAPIPEAKSPAMTTTTLKTTTLATPATATT
TTPATTTTATAATEVVTTPKAVDTTSSQAPATTTRPTTTVRTTTITTTTT
TATTTPKTEETTTTTTKKPEPTTMVAPRTTKTSAIEAAAAAAAAAAATGT
TTVATSAETPTTTTSTAAAATATTTSHATPTDKSNSNNMAHPIHPSQQQH
HQQQQILHEGATLQQQHATHVNESADNTRFIPPMLLVKSHYVPPAKHASE
HATTTTRATTTSSTTTAAATATTPAAAAAETSTKVEVQPSTVTSSKELTA
ATAAATTSAATVADTVATSTVTATTGAAVEVTTSVKVTEDTAATSAATVI
ASEAPPAAAATTTATRAAAANEIKSNATAAAATTTAAATTTTSIPKPVRE
FRYPRVNQGSFKVDNNGMGSPEEEEEDEEGHLKTEAATTRHNFLEETEAP
FKPNRRRSLTKPETVSYFKKILGASFLDH
BO11095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-PB | 873 | CG15765-PB | 1..873 | 1..873 | 4477 | 100 | Plus |
| CG15765-PA | 873 | CG15765-PA | 1..873 | 1..873 | 4477 | 100 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 173..556 | 415..793 | 482 | 32.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 251..607 | 433..793 | 481 | 33 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 133..474 | 433..793 | 478 | 32.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 148..499 | 415..793 | 474 | 32.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 381..727 | 420..797 | 472 | 33.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 354..714 | 420..793 | 470 | 33.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 425..778 | 433..794 | 470 | 33.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 405..756 | 429..798 | 469 | 31.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 288..655 | 420..793 | 461 | 32.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 403..763 | 420..796 | 459 | 32.3 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 442..797 | 433..799 | 440 | 32.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 462..789 | 415..783 | 437 | 33 | Plus |
| CG34220-PA | 726 | CG34220-PA | 41..453 | 420..793 | 409 | 30.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 96..443 | 443..793 | 407 | 30.3 | Plus |
| CG46026-PA | 666 | CG46026-PA | 285..642 | 430..795 | 406 | 31.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 95..440 | 447..793 | 383 | 30.4 | Plus |
| CG34220-PA | 726 | CG34220-PA | 51..366 | 425..796 | 367 | 30.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 519..793 | 415..766 | 346 | 31.5 | Plus |
| CG34220-PA | 726 | CG34220-PA | 252..647 | 415..800 | 337 | 27.7 | Plus |
| CG34220-PA | 726 | CG34220-PA | 224..594 | 421..805 | 322 | 27.6 | Plus |
| CG34220-PA | 726 | CG34220-PA | 108..586 | 415..795 | 280 | 24.3 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 91..361 | 483..793 | 272 | 27.3 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 628..804 | 420..589 | 263 | 37.3 | Plus |
| CG34220-PA | 726 | CG34220-PA | 40..390 | 457..826 | 250 | 24.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 88..285 | 596..793 | 211 | 27.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 107..266 | 643..797 | 196 | 30 | Plus |
| CG34220-PA | 726 | CG34220-PA | 365..586 | 408..592 | 190 | 29 | Plus |
| CG34220-PA | 726 | CG34220-PA | 28..178 | 643..793 | 187 | 27.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 102..239 | 652..797 | 171 | 28.8 | Plus |
