Clone Sequence Records
BO11096.3prime Sequence
842 bp (809 high quality bases) assembled on 2006-04-19
> BO11096.3prime
ATGGTCTAGAAAGCTTGCGTCACTCATCTCCACCCATTTGGCGAGCTTTC
TGCCGACCAGCTCCTTATTGATAAAGATTACATTATTGGGACCTAGGGAT
GCGAATAAAAAGATTTCTGGTAGGTTGTGACTATTATAGCCGGCGACTTG
TGCTTGCAAGACAATGCCTTTGGTAAGTTTGTTGAGGATTTCGGCCGCCT
CAATGGACCAGGTGCCACCGATGGGCTCAATGTTGGACAGGATGCATTCG
GTGGACTGGAAGGGCACATTCATGAAATCGGTGCGAATCTGTCGCAGTGT
GTTGAAGCCGACATTCATGTAGCCACCAAAGTCAAGAAACTTGATTACGC
AACGCTCCTCGTCCTCGGGATCTGTGTCGACAATCTGGACGCGATACCAC
ACATCATTGATGGGTATCACGCACACGGCACTAAGCTCCAAACTGGGCAG
CAATGGCGCCTCCATGGTGGAGTAGCTATCGTACAGCTGCTTCTGCAGCA
AAGGCAACGATGGATGCGAGGGATGCAGCGGGTGCTGGATGAAAATATGC
GACCCAGATAGCACCGCACTCACTACCACATCGTTGTTGATGCCCTCAAT
CAGTTTCAGTTGTAGATTGTAGAGGCTTTCGGTCGAAAGAGGAACTATGG
TCTGGGGAAGCGCAAAGTGGATGCGTTGCATGGTGAAGTTCGGATAGCGC
TTGGCCGGCAAACGTTGACGGATCATGGCCAGGGCGGCATCAATCTCGCT
CTCCGTTCCCTCAATGGTACAGATGCGCACCTTGCCCGAGTAGGGATTCT
TGCCTACAGACACGCTGGCCCAGGTCTTGGCCTTGATTTGGT
BO11096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3249-PB | 1758 | CG3249-RB | 932..1755 | 842..19 | 4070 | 99.7 | Minus |
| CG3249-PA | 1758 | CG3249-RA | 932..1755 | 842..19 | 4070 | 99.7 | Minus |
| CG3249-PC | 1824 | CG3249-RC | 998..1821 | 842..19 | 4070 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RA | 3341 | CG3249-RA | 1369..2192 | 842..19 | 4090 | 99.8 | Minus |
| spoon-RE | 3179 | CG3249-RE | 1207..2030 | 842..19 | 4090 | 99.8 | Minus |
| spoon-RD | 3668 | CG3249-RD | 1696..2519 | 842..19 | 4090 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5415525..5415918 | 216..609 | 1970 | 100 | Plus |
| X | 23542271 | X | 5416186..5416422 | 606..842 | 1140 | 98.7 | Plus |
| X | 23542271 | X | 5415322..5415456 | 85..219 | 675 | 100 | Plus |
| X | 23542271 | X | 5414976..5415041 | 19..84 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:55:40 has no hits.
BO11096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:06 Download gff for
BO11096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3249-PC | 998..1824 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:35 Download gff for
BO11096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3249-PC | 998..1824 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:24:39 Download gff for
BO11096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 1170..2003 | 10..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:03 Download gff for
BO11096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 1696..2529 | 10..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:03 Download gff for
BO11096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5414966..5415041 | 10..84 | 94 | <- | Plus |
| X | 5415322..5415455 | 85..218 | 100 | <- | Plus |
| X | 5415528..5415918 | 219..609 | 100 | <- | Plus |
| X | 5416190..5416422 | 610..842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:24:39 Download gff for
BO11096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5308999..5309074 | 10..84 | 94 | <- | Plus |
| arm_X | 5309355..5309488 | 85..218 | 100 | <- | Plus |
| arm_X | 5309561..5309951 | 219..609 | 100 | <- | Plus |
| arm_X | 5310223..5310455 | 610..842 | 99 | | Plus |
BO11096.5prime Sequence
918 bp (801 high quality bases) assembled on 2006-04-19
> BO11096.5prime
GAAGTTATCAGTCGACATGGTATCCGGTCGTCCTCTACTCTACCTCTCAC
TGCCCGGTGTAGCATTTATACTCGGCGTCTTTTGGTTTCGGCGTAGATAT
AAAAATTGTTTAGACAAGCCCGACGACGAGGACTCATCGGCCATCAATGA
CTCGTCGATTGAACCAACTGTGCAGGCGCGCAAGGCCAACGGAGTCCTGC
AGAATGGCAAGCTGCCACAGCAGTCGGCCAGCAAGTCGATGAACATCAAC
GGAACTTTAGTTAACGGTAGCGGAAGCGGTAGCGGAAGTAGCAGTGATGA
GAAGGACAGCCCCACTACCATGTTGTATGGTAAATCAGCACCAATCAAAA
TCCAGAGCAATGGACGCACTTCAAATGGCAAGCATCAGCAGCAGATCGAT
TCCGAAATACTGAAGTCAAAGATACAGGATGCCGAACACAAGACACTCTG
CTCCATAGACGAGGATTTCGAGAATCTATCGTCGCCACGTGATTTACCCG
ATTCGGTAAATACACGCGTATCCTTCTACAATCGTAAGGCTACCCAAAAG
ACGGTGGAACCGGTGGTGATTAAGGCCACGCGCACACCCAAAATATCGCC
AGAGAACTCCTTCCTGGATACCAACTACACCAACAAGGAGTGCGAGCAGA
ACAACAACTGTGAGCCCAAGGAGGAGCCCTCCAAGAAGGAGGCCGATCAG
GAGGAGCTCGAGCAGGATCAGGAGCAGACGGTGCTGAAGGAGGAAGTGGT
GGATAGCAATGGTAATCAGAAGCGCAATGTGGATGCGGCCAGTCCATCGC
TGAGCATTTGCAGTGTGCAATCGGGCGATTCTGGGCAGGGATCCAGCTTG
CCGCGCTCGGAGGCGACACGCGTGAAAACCACCTACAAATTCCTCTTTCC
CGATCAGCTTGATTGGTC
BO11096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3249-PB | 1758 | CG3249-RB | 1..881 | 17..897 | 4305 | 99.5 | Plus |
| CG3249-PA | 1758 | CG3249-RA | 1..881 | 17..897 | 4305 | 99.5 | Plus |
| CG3249-PC | 1824 | CG3249-RC | 67..947 | 17..897 | 4305 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RA | 3341 | CG3249-RA | 438..1338 | 17..918 | 4425 | 99.4 | Plus |
| spoon-RE | 3179 | CG3249-RE | 276..1176 | 17..918 | 4425 | 99.4 | Plus |
| spoon-RD | 3668 | CG3249-RD | 765..1665 | 17..918 | 4425 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5416453..5417353 | 918..17 | 4400 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:48:50 has no hits.
BO11096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:07 Download gff for
BO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3249-PC | 58..967 | 8..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:18:37 Download gff for
BO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3249-PC | 58..967 | 8..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:19 Download gff for
BO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 230..1139 | 8..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:11:31 Download gff for
BO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 756..1665 | 8..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:11:31 Download gff for
BO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5416453..5417362 | 8..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:19 Download gff for
BO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5310486..5311395 | 8..918 | 99 | | Minus |
BO11096.complete Sequence
1789 bp (1789 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631998
> BO11096.complete
GAAGTTATCAGTCGACATGGTATCCGGTCGTCCTCTACTCTACCTCTCAC
TGCCCGGTGTAGCATTTATACTCGGCGTCTTTTGGTTTCGGCGTAGATAT
AAAAATTGTTTAGACAAGCCCGACGACGAGGACTCATCGGCCATCAATGA
CTCGTCGATTGAACCAACTGTGCAGGCGCGCAAGGCCAACGGAGTCCTGC
AGAATGGCAAGCTGCCACAGCAGTCGGCCAGCAAGTCGATGAACATCAAC
GGAACTTTAGTTAACGGTAGCGGAAGCGGTAGCGGAAGTAGCAGTGATGA
GAAGGACAGCCCCACTACCATGTTGTATGGTAAATCAGCACCAATCAAAA
TCCAGAGCAATGGACGCACTTCAAATGGCAAGCATCAGCAGCAGATCGAT
TCCGAAATACTGAAGTCAAAGATACAGGATGCCGAACACAAGACACTCTG
CTCCATAGACGAGGATTTCGAGAATCTATCGTCGCCACGTGATTTACCCG
ATTCGGTAAATACACGCGTATCCTTCTACAATCGTAAGGCTACCCAAAAG
ACGGTGGAACCGGTGGTGATTAAGGCCACGCGCACACCCAAAATATCGCC
AGAGAACTCCTTCCTGGATACCAACTACACCAACAAGGAGTGCGAGCAGA
ACAACAACTGTGAGCCCAAGGAGGAGCCCTCCAAGAAGGAGGCCGATCAG
GAGGAGCTCGAGCAGGATCAGGAGCAGACGGTGCTGAAGGAGGAAGTGGT
GGATAGCAATGGTAATCAGAAGCGCAATGTGGATGCGGCCAGTCCATCGC
TGAGCATTTGCAGTGTGCAATCGGGCGATTCTGGCAAGGGATCCAGCTTG
CCGCGCTCGGAGGCGACACGCGTGAAAACCACCTACGAGTTCCTCTTCCC
GATCAGCTTGATTGGTCACCTGTACGGCCGCAAGCGGGCGTTTATTAACC
AAATCAAGGCCAAGACCCTGGCCAGCGTGTCTGTAGGCAAGAATCCCTAC
TCGGGCAAGGTGCGCATCTGTACCATTGAGGGAACGGAGAGCGAGATTGA
TGCCGCCCTGGCCATGATCCGTCAACGTTTGCCGGCCAAGCGCTATCCGA
ACTTCACCATGCAACGCATCCACTTTGCGCTTCCCCAGACCATAGTTCCT
CTTTCGACCGAAAGCCTCTACAATCTACAACTGAAACTGATTGAGGGCAT
CAACAACGATGTGGTAGTGAGTGCGGTGCTATCTGGGTCGCATATTTTCA
TCCAGCACCCGCTGCATCCCTCGCATCCATCGTTGCCTTTGCTGCAGAAG
CAGCTGTACGATAGCTACTCCACCATGGAGGCGCCATTGCTGCCCAGTTT
GGAGCTTAGTGCCGTGTGCGTGATACCCATCAATGATGTGTGGTATCGCG
TCCAGATTGTCGACACAGATCCCGAGGACGAGGAGCGTTGCGTAATCAAG
TTTCTTGACTTTGGTGGCTACATGAATGTCGGCTTCAACACACTGCGACA
GATTCGCACCGATTTCATGAATGTGCCCTTCCAGTCCACCGAATGCATCC
TGTCCAACATTGAGCCCATCGGTGGCACCTGGTCCATTGAGGCGGCCGAA
ATCCTCAACAAACTTACCAAAGGCATTGTCTTGCAAGCACAAGTCGCCGG
CTATAATAGTCACAACCTACCAGAAATCTTTTTATTCGCATCCCTAGGTC
CCAATAATGTAATCTTTATCAATAAGGAGCTGGTCGGCAGAAAGCTCGCC
AAATGGGTGGAGATGAGTGACGCAAGCTTTCTAGACCAT
BO11096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RA | 1758 | CG3249-PA | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| spoon-RE | 1758 | CG3249-PE | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| spoon-RD | 1758 | CG3249-PD | 1..1755 | 17..1771 | 8775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RA | 3341 | CG3249-RA | 438..2192 | 17..1771 | 8775 | 100 | Plus |
| spoon-RE | 3179 | CG3249-RE | 276..2030 | 17..1771 | 8775 | 100 | Plus |
| spoon-RD | 3668 | CG3249-RD | 765..2519 | 17..1771 | 8775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5416186..5417353 | 1184..17 | 5825 | 99.9 | Minus |
| X | 23542271 | X | 5415525..5415918 | 1574..1181 | 1970 | 100 | Minus |
| X | 23542271 | X | 5415322..5415456 | 1705..1571 | 675 | 100 | Minus |
| X | 23542271 | X | 5414976..5415041 | 1771..1706 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:37:18 has no hits.
BO11096.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:22 Download gff for
BO11096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3249-RC | 58..1824 | 8..1775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:10 Download gff for
BO11096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yu-RC | 156..1929 | 8..1780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:33 Download gff for
BO11096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 239..1993 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:22 Download gff for
BO11096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3249-RC | 156..1929 | 8..1780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:17 Download gff for
BO11096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 765..2519 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:17 Download gff for
BO11096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5414974..5415041 | 1706..1773 | 97 | <- | Minus |
| X | 5415322..5415455 | 1572..1705 | 100 | <- | Minus |
| X | 5415528..5415918 | 1181..1571 | 100 | <- | Minus |
| X | 5416190..5417353 | 17..1180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:33 Download gff for
BO11096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5309007..5309074 | 1706..1773 | 97 | <- | Minus |
| arm_X | 5309355..5309488 | 1572..1705 | 100 | <- | Minus |
| arm_X | 5309561..5309951 | 1181..1571 | 100 | <- | Minus |
| arm_X | 5310223..5311386 | 17..1180 | 100 | | Minus |
BO11096.pep Sequence
Translation from 16 to 1789
> BO11096.pep
MVSGRPLLYLSLPGVAFILGVFWFRRRYKNCLDKPDDEDSSAINDSSIEP
TVQARKANGVLQNGKLPQQSASKSMNINGTLVNGSGSGSGSSSDEKDSPT
TMLYGKSAPIKIQSNGRTSNGKHQQQIDSEILKSKIQDAEHKTLCSIDED
FENLSSPRDLPDSVNTRVSFYNRKATQKTVEPVVIKATRTPKISPENSFL
DTNYTNKECEQNNNCEPKEEPSKKEADQEELEQDQEQTVLKEEVVDSNGN
QKRNVDAASPSLSICSVQSGDSGKGSSLPRSEATRVKTTYEFLFPISLIG
HLYGRKRAFINQIKAKTLASVSVGKNPYSGKVRICTIEGTESEIDAALAM
IRQRLPAKRYPNFTMQRIHFALPQTIVPLSTESLYNLQLKLIEGINNDVV
VSAVLSGSHIFIQHPLHPSHPSLPLLQKQLYDSYSTMEAPLLPSLELSAV
CVIPINDVWYRVQIVDTDPEDEERCVIKFLDFGGYMNVGFNTLRQIRTDF
MNVPFQSTECILSNIEPIGGTWSIEAAEILNKLTKGIVLQAQVAGYNSHN
LPEIFLFASLGPNNVIFINKELVGRKLAKWVEMSDASFLDH
BO11096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-PA | 585 | CG3249-PA | 1..585 | 1..585 | 3008 | 100 | Plus |
| spoon-PE | 585 | CG3249-PE | 1..585 | 1..585 | 3008 | 100 | Plus |
| spoon-PD | 585 | CG3249-PD | 1..585 | 1..585 | 3008 | 100 | Plus |
| spoon-PC | 607 | CG3249-PC | 23..607 | 1..585 | 3008 | 100 | Plus |
| papi-PD | 576 | CG7082-PD | 140..425 | 291..546 | 185 | 25.8 | Plus |
