Clone Sequence Records
BO11114.3prime Sequence
956 bp (832 high quality bases) assembled on 2006-04-19
> BO11114.3prime
ATGGTCTAGAAAGCTTGCCTGTAGCTCCGTAGAGTCGGCAGTGTTTGAGT
TTGAATTCTCCTCCGACTTCTTTGACGACGGGGAGGAGTCAGATAGATTG
GGCGAGAGGTCGCGCAGCTTGACAACATTTCCCACGGACACCAGATTGGC
CGCCTCAGCCACCGAGTAGCCAATGTCCGGCGGTGTTCCCTCTGGATAGC
CGAGATAGTAATCCGCAATACGTCCCGCCTCGCGCAATCCGCTCAAGTAC
GCTCCATGCACAGTGGCCGGATAATTCCGTATCGTATGCTCACCCGCGAA
GAATAGCCGTGGCAATCCTTCCGCATCCTTACTGGACGGCGGAATGACCG
GCGCCGCCAGCAGATCGTAGTCACTGCCCGAGGAACCAACGGATACGTAG
CTGTACGACCCACGGGCCCAGGGATCGCTGCGCCAACGCGTTACCACTGT
TTCCTTGGGTTGTGGAACAGAGGTATTCCCGAAGATGTTTTTTAGCACCG
ACATACAACGCCCGATTATGATGTCATCCGTCACGCTCTCCACCAGATTC
GCTGCCATTCCGGCGACTAGAGCGAGCAACACCGGAGATGAGCTTATACT
CCAGAACAGAAACATTTCTCCTCTACTCGCCGTCGTGCTGCCCACGTGTC
CGAAGAGATTAGCGTTGGGATCCCAAAAAATGCGATCGAAGCAGAGCACA
ACCTTATTGAGATTCCCAAATCCCAGCCTTTTGATGGCCTGCTGTTTCCA
GTCCGGCAATGGCGGGTCGAACTTGACTGTGTTACTCTGCTGTGACTCCT
TATGTGCTACCGCCACTTTGAGGACGCCCAGAGTAAGTGTGCAGACGACA
AGGTCTGCCTTGTATGTCATCTGCGAATTGGATGTCTTTCAGTTTTCAGC
CACTACTTCCACACTTTTGGTGCCGTACTTTATCTCCTTGACGGGGCTTT
TGACCC
BO11114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17149-PA | 2673 | CG17149-RA | 1745..2670 | 944..19 | 4555 | 99.6 | Minus |
| CG17149-PB | 2673 | CG17149-RB | 1745..2670 | 944..19 | 4555 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-3-RC | 3555 | CG17149-RC | 2044..2979 | 954..19 | 4605 | 99.5 | Minus |
| Su(var)3-3-RB | 3615 | CG17149-RB | 2104..3039 | 954..19 | 4605 | 99.5 | Minus |
| Su(var)3-3-RA | 3681 | CG17149-RA | 2170..3105 | 954..19 | 4605 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20229071..20229674 | 622..19 | 3020 | 100 | Minus |
| 3L | 28110227 | 3L | 20228622..20228956 | 954..620 | 1600 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:45:56 has no hits.
BO11114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:24 Download gff for
BO11114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17149-PA | 1733..2673 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:02 Download gff for
BO11114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17149-PB | 1733..2673 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:34:44 Download gff for
BO11114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 2168..3108 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:36:11 Download gff for
BO11114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 2168..3108 | 15..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:36:11 Download gff for
BO11114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20228620..20228955 | 621..956 | 98 | -> | Minus |
| 3L | 20229073..20229677 | 15..620 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:34:44 Download gff for
BO11114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20221720..20222055 | 621..956 | 98 | -> | Minus |
| arm_3L | 20222173..20222777 | 15..620 | 99 | | Minus |
BO11114.5prime Sequence
919 bp (894 high quality bases) assembled on 2006-04-19
> BO11114.5prime
GAAGTTATCAGTCGACATGAAACCCACCCAGTTCGGAGGCAGTAGCTCCA
AGATGACCGAGCCAATTGAGTATGTGACGCTAATTAGCGACGATTCCGAT
GGTGAGCCCACGCCCAAAAGAAACGTCAATCACCCGCCGTCGGCATTGTC
AGCACCCAATCCTGGTCAGAAACAAAAGCACCCGGATGAGGACTCAAATG
ACGCACCTGCCACCAGCGATGAGCGACGCACAAGTAGGCGCAATCGGCCA
AAAGTGGATTATAGTAACAGGCCTAGTGGAAGTGGAGACACCGCCTCCAA
TGACAAGTCAGGATCGGCATCCATGGGACCTAACAACCAGCAAGCAGAGC
GTCGCAGCCAAAGCCAAACCCGCAAGTCAGAAGCCAATGCTACCTCCTCC
TCCGTGTCCGGACCCAGTGCCGGAAATTCCAGACCGTCCCAGAACGGAGA
TTCCAAGGACCGGGATGCCGGCACGCCCACGGTTTTGTCTGGCCAAGAGG
GCGCCGTCTTCCAATCTCGCCTGCCATTTAACAAAATGACACCCAACGAA
GAGGCCTGCTTTCCGGACATCAGTCGCTCGGGCATTCTCGGCCATCGGGT
ATTCCTCAACATTCGTAACAGCCTCTTGCACATGTGGGTGGACAATCCCA
AGATCCAGCTGAGCTTCGAGATCGCCCTGAAGAACCTGCCGCCGCCATTC
GACAGCGAGCCCAGTTTGGTAAGGCGAGTACACTCGTTTCTGGAGCGTCA
TGGCTTCATTAACTTCGGCATCTTTAAGCGACTTAAGCCTATACCCGCCA
AAAAGCTGGGCAAAGTCATAGTGATTGGGGCAGGGATCTCCGGCTTAGCA
GTGGCACACCAGTTGCAGCAGTTCGGCATGGATGTGATCGTCTTGGAAGC
GCGGGATCGGGTAGGGGGA
BO11114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17149-PA | 2673 | CG17149-RA | 1..903 | 17..919 | 4515 | 100 | Plus |
| CG17149-PB | 2673 | CG17149-RB | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-3-RB | 3615 | CG17149-RB | 370..1272 | 17..919 | 4515 | 100 | Plus |
| Su(var)3-3-RA | 3681 | CG17149-RA | 436..1338 | 17..919 | 4515 | 100 | Plus |
| Su(var)3-3-RC | 3555 | CG17149-RC | 370..1071 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20226816..20227718 | 17..919 | 4515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:44:33 has no hits.
BO11114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:25 Download gff for
BO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17149-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:04 Download gff for
BO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17149-PB | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:40 Download gff for
BO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 428..1337 | 7..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:43 Download gff for
BO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 428..1337 | 7..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:43 Download gff for
BO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20226808..20227717 | 7..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:40 Download gff for
BO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20219908..20220817 | 7..918 | 99 | | Plus |
BO11114.complete Sequence
2704 bp (2704 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ632000
> BO11114.complete
GAAGTTATCAGTCGACATGAAACCCACCCAGTTCGGAGGCAGTAGCTCCA
AGATGACCGAGCCAATTGAGTATGTGACGCTAATTAGCGACGATTCCGAT
GGTGAGCCCACGCCCAAAAGAAACGTCAATCACCCGCCGTCGGCATTGTC
AGCACCCAATCCTGGTCAGAAACAAAAGCACCCGGATGAGGACTCAAATG
ACGCACCTGCCACCAGCGATGAGCGACGCACAAGTAGGCGCAATCGGCCA
AAAGTGGATTATAGTAACAGGCCTAGTGGAAGTGGAGACACCGCCTCCAA
TGACAAGTCAGGATCGGCATCCATGGGACCTAACAACCAGCAAGCAGAGC
GTCGCAGCCAAAGCCAAACCCGCAAGTCAGAAGCCAATGCTACCTCCTCC
TCCGTGTCCGGACCCAGTGCCGGAAATTCCAGACCGTCCCAGAACGGAGA
TTCCAAGGACCGGGATGCCGGCACGCCCACGGTTTTGTCTGGCCAAGAGG
GCGCCGTCTTCCAATCTCGCCTGCCATTTAACAAAATGACACCCAACGAA
GAGGCCTGCTTTCCGGACATCAGTCGCTCGGGCATTCTCGGCCATCGGGT
ATTCCTCAACATTCGTAACAGCCTCTTGCACATGTGGGTGGACAATCCCA
AGATCCAGCTGAGCTTCGAGATCGCCCTGAAGAACCTGCCGCCGCCATTC
GACAGCGAGCCCAGTTTGGTAAGGCGAGTACACTCGTTTCTGGAGCGTCA
TGGCTTCATTAACTTCGGCATCTTTAAGCGACTTAAGCCTATACCCGCCA
AAAAGCTGGGCAAAGTCATAGTGATTGGGGCAGGGATCTCCGGCTTAGCA
GTGGCACACCAGTTGCAGCAGTTCGGCATGGATGTGATCGTCTTGGAAGC
GCGGGATCGGGTAGGGGGACGGATATCTACGTTTCGGAAGAACAGCTATA
TTGCCGATGTGGGAGCAATGGTGGTTACCGGCGTCTATGGCAATCCAATG
ACGATCCTCAGCAAGCAGATCGGTATGGACCTAGTTCCCATCCAGCAGAC
ATGTCCACTTTACGGCCCAGATGGAAAGCCCGTGCCCAAGGAGAAGGATG
ACGTGATCGAGAGAGAATTTAACCGACTGCTGGAATCAGCCAGCTACCTG
TCCCACCGCCTTGATTTTAACTACGCCGGCGATTGCCCAGTTTCGCTGGG
CGATGCCTTGGAGTGGATAATCAGTATGCAGGAGATGCAGGTGATGCACA
AACGGGGGCAGCACATGCAGGAGATCATAGCCACCCAAACGAAGATCATT
GAACAGCGTCGTCGACTGAAAACCCTTAGAGATACCATCGGCAAACTAAA
GAATGAGCACTTGGCAATGATCAACCAGCGGAAACCCAAAGGCACGGATG
GCGATCTGAAATACTGTTACCAAGAGTTTAACATTCGGAACACCCAGATC
AAAATGGAGGAAACGATCAGTACGTTTCACGATCTCCATGCCGAGGAAAA
GCAGATGTTAGCCAAACTCCACGAACTGGAGCAGAACCGACCTAGCGATG
TGTACCTCTCGTCCCGCGACCGCCTGATCTTGGACTGGCATTTTGCCAAC
TTGGAATTTGCTAATGCCACCCGACTAAATAACCTGTCGTTGAAGCACTG
GGATCAGGACGATGACTTCGAGTTTATTGGCCACCACACAACTGTGCGGA
ACGGTTATTCATGTGTGCCTGTAGCTCTTACTGAAAACCTGGACATCCGT
GTCAATAGCGCCGTCAAGGAGATAAAGTACGGCACCAAAGGTGTGGAAGT
AGTGGCTGAAAACTTGAAGACATCCAATTCGCAGATGACATACAAGGCAG
ACCTTGTCGTCTGCACACTTACTCTGGGCGTCCTCAAAGTGGCGGTAGCA
CATAAGGAGTCACAGCAGAGTAACACAGTCAAGTTCGACCCGCCATTGCC
GGACTGGAAACAGCAGGCCATCAAAAGGCTGGGATTTGGGAATCTCAATA
AGGTTGTGCTCTGCTTCGATCGCATTTTTTGGGATCCCAACGCTAATCTC
TTCGGACACGTGGGCAGCACGACGGCGAGTAGAGGAGAAATGTTTCTGTT
CTGGAGTATAAGCTCATCTCCGGTGTTGCTCGCTCTAGTCGCCGGAATGG
CAGCGAATCTGGTGGAGAGCGTGACGGATGACATCATAATCGGGCGTTGT
ATGTCGGTGCTAAAAAACATCTTCGGGAATACCTCTGTTCCACAACCCAA
GGAAACAGTGGTAACGCGTTGGCGCAGCGATCCCTGGGCCCGTGGGTCGT
ACAGCTACGTATCCGTTGGTTCCTCGGGCAGTGACTACGATCTGCTGGCG
GCGCCGGTCATTCCGCCGTCCAGTAAGGATGCGGAAGGATTGCCACGGCT
ATTCTTCGCGGGTGAGCATACGATACGGAATTATCCGGCCACTGTGCATG
GAGCGTACTTGAGCGGATTGCGCGAGGCGGGACGTATTGCGGATTACTAT
CTCGGCTATCCAGAGGGAACACCGCCGGACATTGGCTACTCGGTGGCTGA
GGCGGCCAATCTGGTGTCCGTGGGAAATGTTGTCAAGCTGCGCGACCTCT
CGCCCAATCTATCTGACTCCTCCCCGTCGTCAAAGAAGTCGGAGGAGAAT
TCAAACTCAAACACTGCCGACTCTACGGAGCTACAGGCAAGCTTTCTAGA
CCAT
BO11114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-3-RB | 2673 | CG17149-PB | 1..2670 | 17..2686 | 13350 | 100 | Plus |
| Su(var)3-3-RA | 2673 | CG17149-PA | 1..2670 | 17..2686 | 13350 | 100 | Plus |
| Su(var)3-3-RC | 2613 | CG17149-PC | 702..2610 | 778..2686 | 9545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-3-RB | 3615 | CG17149-RB | 370..3039 | 17..2686 | 13350 | 100 | Plus |
| Su(var)3-3-RA | 3681 | CG17149-RA | 436..3105 | 17..2686 | 13350 | 100 | Plus |
| Su(var)3-3-RC | 3555 | CG17149-RC | 1071..2979 | 778..2686 | 9545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20226816..20228344 | 17..1545 | 7645 | 100 | Plus |
| 3L | 28110227 | 3L | 20229071..20229674 | 2083..2686 | 3020 | 100 | Plus |
| 3L | 28110227 | 3L | 20228415..20228956 | 1544..2085 | 2710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:34:52 has no hits.
BO11114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:56 Download gff for
BO11114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdm-RB | 1..2673 | 17..2690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:08 Download gff for
BO11114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdm-RB | 306..2986 | 7..2690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:28 Download gff for
BO11114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 436..3105 | 17..2688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:56 Download gff for
BO11114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdm-RB | 306..2986 | 7..2690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:47 Download gff for
BO11114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 436..3105 | 17..2688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:47 Download gff for
BO11114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20226816..20228344 | 17..1545 | 100 | -> | Plus |
| 3L | 20228417..20228955 | 1546..2084 | 100 | -> | Plus |
| 3L | 20229073..20229674 | 2085..2688 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:28 Download gff for
BO11114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20219916..20221444 | 17..1545 | 100 | -> | Plus |
| arm_3L | 20221517..20222055 | 1546..2084 | 100 | -> | Plus |
| arm_3L | 20222173..20222774 | 2085..2688 | 99 | | Plus |
BO11114.pep Sequence
Translation from 16 to 2704
> BO11114.pep
MKPTQFGGSSSKMTEPIEYVTLISDDSDGEPTPKRNVNHPPSALSAPNPG
QKQKHPDEDSNDAPATSDERRTSRRNRPKVDYSNRPSGSGDTASNDKSGS
ASMGPNNQQAERRSQSQTRKSEANATSSSVSGPSAGNSRPSQNGDSKDRD
AGTPTVLSGQEGAVFQSRLPFNKMTPNEEACFPDISRSGILGHRVFLNIR
NSLLHMWVDNPKIQLSFEIALKNLPPPFDSEPSLVRRVHSFLERHGFINF
GIFKRLKPIPAKKLGKVIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVG
GRISTFRKNSYIADVGAMVVTGVYGNPMTILSKQIGMDLVPIQQTCPLYG
PDGKPVPKEKDDVIEREFNRLLESASYLSHRLDFNYAGDCPVSLGDALEW
IISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLA
MINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAK
LHELEQNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDD
FEFIGHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENL
KTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQ
AIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISS
SPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVT
RWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGE
HTIRNYPATVHGAYLSGLREAGRIADYYLGYPEGTPPDIGYSVAEAANLV
SVGNVVKLRDLSPNLSDSSPSSKKSEENSNSNTADSTELQASFLDH
BO11114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-3-PB | 890 | CG17149-PB | 1..890 | 1..890 | 4629 | 100 | Plus |
| Su(var)3-3-PA | 890 | CG17149-PA | 1..890 | 1..890 | 4629 | 100 | Plus |
| Su(var)3-3-PC | 870 | CG17149-PC | 1..870 | 1..890 | 4491 | 97.8 | Plus |
| CG8032-PB | 583 | CG8032-PB | 334..548 | 609..817 | 284 | 31.4 | Plus |
| CG8032-PA | 583 | CG8032-PA | 334..548 | 609..817 | 284 | 31.4 | Plus |
