Clone Sequence Records
BO11115.3prime Sequence
916 bp (825 high quality bases) assembled on 2006-04-19
> BO11115.3prime
ATGGTCTAGAAAGCTTGCGTTGGGCCTCAGCGGCAGCATTCCATAATGTT
GCTGCTGTTGTTGCATCATCATCTGTTGCTGCTGCTGCTGCTGTTGTTGC
TGCTGCTGCTGCTGTTGTTGTTGCTGCTGTTGGGCTGTCACCGCTGATCC
TTGCGAGGTTGTGTAGGTCACGGCGCACGCTGCCGGCTGGGATACCACAA
CTGGAGCACTAACTTTTCGCTCCGACTGCGTGCGAATGGGTTGCGGGTGG
GCTGCATTCGGCTGTGGGGGCGGGGCATACATCAGCATGGGCGGTGGCGG
AGGTGATGGCTCCACGCTGGGATGACGAGCTGGCGGCGTGACAGCCGAGC
CGTGATATGAGCCATAGGAGCTGTCGTCCGACTGCGCCGACTGTCCGCGA
TTCCTTGGTCCCGTCACGCCGTACATTTGCTGCGGGTCACGTCGGTCATA
CTTGTGATTTCCGTCCATCGGCGTCGGATTTGTGCGTGTGCCGTAGACTG
GCTGGAAGCCCTGCGGCTGCTGCTGAGGATCGGACATCATCTGTGGCGGA
GGCTGCATCTGTTGCTGCTGCACTCCCATGTTGGGCTGTTGTTGCTGAAG
CTGCTGCTGCTGCTGCTGTTGTTGTTGCTGCTGGATTGGCTGCTGCTGTC
CGCGCATGGAGCCCCTCATTCCGTAGATGCTCTCGCTGCGCTGCTGCATC
TGATTCTGGACATTTTGGTTCTGTAAATGGGAAGATTGAGGTGCGGGTGC
CACTTGTTGCTGTTGCTGTTGTTGCTGTTGCTGCTGCTGCTGGGTGCGCA
TGGGATAAAGACTCTGGGCGGGCACCAGAAGACCTGGACGCGGCACAATG
TCTCGATTGATGGCCGTGTTGCTCTTGGCGTACACAGATTGCGAGCGATT
CAGGTTGCTTCTGGTC
BO11115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4722-PA | 2091 | bib-RA | 1191..2088 | 916..19 | 4465 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 3276 | CG4722-RB | 1496..2393 | 916..19 | 4475 | 99.9 | Minus |
bib-RA | 3276 | CG4722-RA | 1496..2393 | 916..19 | 4475 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9993758..9994655 | 916..19 | 4475 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 04:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2419 | 648..542 | 230 | 71 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2512 | 723..512 | 230 | 61 | Minus |
BO11115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:26 Download gff for
BO11115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-PA | 1191..2091 | 16..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:05 Download gff for
BO11115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4722-PA | 1191..2091 | 16..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:20 Download gff for
BO11115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 1496..2404 | 8..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:29 Download gff for
BO11115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 1496..2404 | 8..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:29 Download gff for
BO11115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9993758..9994666 | 8..916 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:20 Download gff for
BO11115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9993758..9994666 | 8..916 | 99 | | Minus |
BO11115.5prime Sequence
943 bp (856 high quality bases) assembled on 2006-04-19
> BO11115.5prime
GAAGTTATCAGTCGACATGGCCGACGAAAGTCTGCACACCGTGCCCCTGG
AGCACAACATAGACTACCACATCGTGACGCTATTCGAGCGCCTGGAGGCG
ATGCGTAAGGACTCGCACGGCGGTGGCCACGGGGTCAACAATCGCCTGTC
CAGCACCCTGCAGGCTCCCAAGCGGAGCATGCAGGCTGAGATTCGCACGC
TGGAGTTTTGGAGATCCATCATCAGCGAGTGTCTGGCCTCCTTCATGTAC
GTGTTCATCGTCTGCGGTGCCGCCGCTGGCGTCGGAGTGGGGGCCAGTGT
GTCGTCCGTGCTTTTGGCCACGGCTCTGGCCTCCGGCCTGGCGATGGCTA
CACTGACGCAGTGCTTCCTCCACATCTCGGGCGCCCACATCAATCCCGCC
GTAACCCTGGCTCTATGCGTAGTGCGATCCATATCTCCGATCCGGGCTGC
CATGTACATAACCGCACAATGTGGCGGAGGAATCGCCGGAGCTGCTCTGC
TTTATGGCGTAACTGTGCCTGGTTACCAGGGGAATCTGCAGGCCGCCATC
TCACATAGCGCTGCTCTGGCCGCCTGGGAAAGATTCGGTGTGGAATTCAT
CCTCACCTTTCTGGTGGTTCTGTGCTATTTCGTATCCACGGATCCCATGA
AGAAGTTCATGGGCAATTCGGCCGCCTCGATTGGATGTGCTTACAGCGCC
TGCTGCTTTGTGTCGATGCCGTACCTGAATCCAGCCCGCTCCCTGGGTCC
TTCGTTTGTGCTTAACAAATGGGACAGCCATTGGGTGTACTGGTTCGGAC
CACTGGTGGGCGGCATGGCCTCTGGCCTGGTGTACGAGTACATCTTCAAC
TCGCGCAACCGCAACCTGCGCCACAACAAGGGCAGCATCGACAACGATTC
CCAGTCGATTCACTCGGAGGACGAACTGANCTACGACATGGAT
BO11115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4722-PA | 2091 | bib-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
CG4722-PA | 2091 | bib-RA | 889..927 | 905..943 | 176 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 3276 | CG4722-RB | 302..1232 | 13..943 | 4599 | 99.7 | Plus |
bib-RA | 3276 | CG4722-RA | 302..1232 | 13..943 | 4599 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9993266..9993494 | 715..943 | 1089 | 98.3 | Plus |
2L | 23513712 | 2L | 9992254..9992462 | 507..715 | 1045 | 100 | Plus |
2L | 23513712 | 2L | 9984946..9985146 | 13..213 | 1005 | 100 | Plus |
2L | 23513712 | 2L | 9986787..9986956 | 212..381 | 850 | 100 | Plus |
2L | 23513712 | 2L | 9987600..9987727 | 380..507 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 13:16:16 has no hits.
BO11115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:27 Download gff for
BO11115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:07 Download gff for
BO11115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4722-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:08:15 Download gff for
BO11115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 294..1232 | 5..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:17 Download gff for
BO11115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 294..1232 | 5..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:17 Download gff for
BO11115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9984938..9985146 | 5..213 | 98 | -> | Plus |
2L | 9986789..9986955 | 214..380 | 100 | -> | Plus |
2L | 9987601..9987727 | 381..507 | 100 | -> | Plus |
2L | 9992255..9992462 | 508..715 | 100 | -> | Plus |
2L | 9993267..9993494 | 716..943 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:08:15 Download gff for
BO11115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9984938..9985146 | 5..213 | 98 | -> | Plus |
arm_2L | 9986789..9986955 | 214..380 | 100 | -> | Plus |
arm_2L | 9987601..9987727 | 381..507 | 100 | -> | Plus |
arm_2L | 9992255..9992462 | 508..715 | 100 | -> | Plus |
arm_2L | 9993267..9993494 | 716..943 | 98 | | Plus |
BO11115.complete Sequence
2122 bp (2122 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632001
> BO11115.complete
GAAGTTATCAGTCGACATGGCCGACGAAAGTCTGCACACCGTGCCCCTGG
AGCACAACATAGACTACCACATCGTGACGCTATTCGAGCGCCTGGAGGCG
ATGCGTAAGGACTCGCACGGCGGTGGCCACGGGGTCAACAATCGCCTGTC
CAGCACCCTGCAGGCTCCCAAGCGGAGCATGCAGGCTGAGATTCGCACGC
TGGAGTTTTGGAGATCCATCATCAGCGAGTGTCTGGCCTCCTTCATGTAC
GTGTTCATCGTCTGCGGTGCCGCCGCTGGCGTCGGAGTGGGGGCCAGTGT
GTCGTCCGTGCTTTTGGCCACGGCTCTGGCCTCCGGCCTGGCGATGGCTA
CACTGACGCAGTGCTTCCTCCACATCTCGGGCGCCCACATCAATCCCGCC
GTAACCCTGGCTCTATGCGTAGTGCGATCCATATCTCCGATCCGGGCTGC
CATGTACATAACCGCACAATGTGGCGGAGGAATCGCCGGAGCTGCTCTGC
TTTATGGCGTAACTGTGCCTGGTTACCAGGGGAATCTGCAGGCCGCCATC
TCACATAGCGCTGCTCTGGCCGCCTGGGAAAGATTCGGTGTGGAATTCAT
CCTCACCTTTCTGGTGGTTCTGTGCTATTTCGTATCCACGGATCCCATGA
AGAAGTTCATGGGCAATTCGGCCGCCTCGATTGGATGTGCTTACAGCGCC
TGCTGCTTTGTGTCGATGCCGTACCTGAATCCAGCCCGCTCCCTGGGTCC
TTCGTTTGTGCTTAACAAATGGGACAGCCATTGGGTGTACTGGTTCGGAC
CACTGGTGGGCGGCATGGCCTCTGGCCTGGTGTACGAGTACATCTTCAAC
TCGCGCAACCGCAACCTGCGCCACAACAAGGGCAGCATCGACAACGATTC
CAGTTCGATTCACTCGGAGGACGAACTGAACTACGACATGGATATGGAGA
AGCCCAACAAGTATCAGCAGTCGCAGGGCACCTACCCGCGTGGCCAGTCC
AATGGCAATGGCGGAGGACAGGCGGCCGGAAATGGTCAGCACCAAGCTGC
CAACATGGGCCAGATGCCGGGCGTAGTGGCCAATGCCGGTCAGGGCAATT
ACTGCCAGAATCTGTACACTGCTCCGCCGCTCTCCTCGAAGTACGATCAG
CAGCAGGAACCTCTGTACGGTGGAACCCGCTCACTGTACTGCCGTTCGCC
CACTCTGACCAGAAGCAACCTGAATCGCTCGCAATCTGTGTACGCCAAGA
GCAACACGGCCATCAATCGAGACATTGTGCCGCGTCCAGGTCCTCTGGTG
CCCGCCCAGAGTCTTTATCCCATGCGCACCCAGCAGCAGCAGCAACAGCA
ACAACAGCAACAGCAACAAGTGGCACCCGCACCTCAATCTTCCCATTTAC
AGAACCAAAATGTCCAGAATCAGATGCAGCAGCGCAGCGAGAGCATCTAC
GGAATGAGGGGCTCCATGCGCGGACAGCAGCAGCCAATCCAGCAGCAACA
ACAACAGCAGCAGCAGCAGCAGCTTCAGCAACAACAGCCCAACATGGGAG
TGCAGCAGCAACAGATGCAGCCTCCGCCACAGATGATGTCCGATCCTCAG
CAGCAGCCGCAGGGCTTCCAGCCAGTCTACGGCACACGCACAAATCCGAC
GCCGATGGACGGAAATCACAAGTATGACCGACGTGACCCGCAGCAAATGT
ACGGCGTGACGGGACCAAGGAATCGCGGACAGTCGGCGCAGTCGGACGAC
AGCTCCTATGGCTCATATCACGGCTCGGCTGTCACGCCGCCAGCTCGTCA
TCCCAGCGTGGAGCCATCACCTCCGCCACCGCCCATGCTGATGTATGCCC
CGCCCCCACAGCCGAATGCAGCCCACCCGCAACCCATTCGCACGCAGTCG
GAGCGAAAAGTTAGTGCTCCAGTTGTGGTATCCCAGCCGGCAGCGTGCGC
CGTGACCTACACAACCTCGCAAGGATCAGCGGTGACAGCCCAACAGCAGC
AACAACAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAG
ATGATGATGCAACAACAGCAGCAACATTATGGAATGCTGCCGCTGAGGCC
CAACGCAAGCTTTCTAGACCAT
BO11115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 2214 | CG4722-PB | 1..2088 | 17..2104 | 10440 | 100 | Plus |
bib-RA | 2091 | CG4722-PA | 1..2088 | 17..2104 | 10440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 3276 | CG4722-RB | 302..2393 | 13..2104 | 10460 | 100 | Plus |
bib-RA | 3276 | CG4722-RA | 302..2393 | 13..2104 | 10460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9993266..9994655 | 715..2104 | 6950 | 100 | Plus |
2L | 23513712 | 2L | 9992254..9992462 | 507..715 | 1045 | 100 | Plus |
2L | 23513712 | 2L | 9984946..9985146 | 13..213 | 1005 | 100 | Plus |
2L | 23513712 | 2L | 9986787..9986956 | 212..381 | 850 | 100 | Plus |
2L | 23513712 | 2L | 9987600..9987727 | 380..507 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2419 | 1475..1581 | 230 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2512 | 1400..1611 | 230 | 61 | Plus |
BO11115.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:23 Download gff for
BO11115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 1..2091 | 17..2107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:13 Download gff for
BO11115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 292..2402 | 5..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:20 Download gff for
BO11115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 306..2393 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:23 Download gff for
BO11115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 292..2402 | 5..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:45 Download gff for
BO11115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 306..2393 | 17..2106 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:45 Download gff for
BO11115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9992255..9992462 | 508..715 | 100 | -> | Plus |
2L | 9987601..9987727 | 381..507 | 100 | -> | Plus |
2L | 9984950..9985146 | 17..213 | 100 | -> | Plus |
2L | 9986789..9986955 | 214..380 | 100 | -> | Plus |
2L | 9993267..9994655 | 716..2106 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:20 Download gff for
BO11115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9987601..9987727 | 381..507 | 100 | -> | Plus |
arm_2L | 9992255..9992462 | 508..715 | 100 | -> | Plus |
arm_2L | 9984950..9985146 | 17..213 | 100 | -> | Plus |
arm_2L | 9986789..9986955 | 214..380 | 100 | -> | Plus |
arm_2L | 9993267..9994655 | 716..2106 | 99 | | Plus |
BO11115.pep Sequence
Translation from 16 to 2122
> BO11115.pep
MADESLHTVPLEHNIDYHIVTLFERLEAMRKDSHGGGHGVNNRLSSTLQA
PKRSMQAEIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSVLL
ATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITA
QCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLV
VLCYFVSTDPMKKFMGNSAASIGCAYSACCFVSMPYLNPARSLGPSFVLN
KWDSHWVYWFGPLVGGMASGLVYEYIFNSRNRNLRHNKGSIDNDSSSIHS
EDELNYDMDMEKPNKYQQSQGTYPRGQSNGNGGGQAAGNGQHQAANMGQM
PGVVANAGQGNYCQNLYTAPPLSSKYDQQQEPLYGGTRSLYCRSPTLTRS
NLNRSQSVYAKSNTAINRDIVPRPGPLVPAQSLYPMRTQQQQQQQQQQQQ
QVAPAPQSSHLQNQNVQNQMQQRSESIYGMRGSMRGQQQPIQQQQQQQQQ
QQLQQQQPNMGVQQQQMQPPPQMMSDPQQQPQGFQPVYGTRTNPTPMDGN
HKYDRRDPQQMYGVTGPRNRGQSAQSDDSSYGSYHGSAVTPPARHPSVEP
SPPPPPMLMYAPPPQPNAAHPQPIRTQSERKVSAPVVVSQPAACAVTYTT
SQGSAVTAQQQQQQQQQQQQQQQQQQQQMMMQQQQQHYGMLPLRPNASFL
DH
BO11115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-PB | 737 | CG4722-PB | 1..696 | 1..696 | 3677 | 100 | Plus |
bib-PA | 696 | CG4722-PA | 1..696 | 1..696 | 3677 | 100 | Plus |
Drip-PE | 239 | CG9023-PE | 15..236 | 63..295 | 365 | 36.1 | Plus |
Drip-PD | 242 | CG9023-PD | 18..239 | 63..295 | 365 | 36.1 | Plus |
Drip-PC | 243 | CG9023-PC | 19..240 | 63..295 | 365 | 36.1 | Plus |