Clone Sequence Records
BO11116.3prime Sequence
950 bp (843 high quality bases) assembled on 2006-04-19
> BO11116.3prime
ATGGTCTAGAAAGCTTGCACAATCCGGTTCAACAAAGGAGGCGGGGAACA
GCCCGGTTTTGTGGGTACGGGCATGGGTGCCCTTATACCAGCCGTTCTTC
TGCTTCCGCTGGACGTAGATAATGTCGCCCAAATGTAGCTCTAGTTCAAT
GTCACTGTTTGGTGGATACGGCACAATGCAGCGGAATCGACTTTCCCTCG
TGCAGTAAGGAGACTTAGTGGTGGCGCTGGCCTTAATGGCCGCCTCCGTG
ATCATATTGCTGCTGGGACTCAGCACATGACTCGCATCTAGGCTGTGCGA
CTTCCGATGGCTGGGTGCAATAATCATATTGGCATGCAACTGGGATTGCG
CTCCACCTCCAGGAATCACCTGTTGCTGACCGCCGGCGTAGACAGCTGGG
GCCACGGAAGTAGTAGGTGGCGGCGGCGACGCGGCATTGTTGTACATACT
GCGAAATGTAGCTGCATCTAATGATTGTCTCGCGCAAATCAAGTGAGGAC
GTTCCTTGCTTCCTTTCACGCGTTGCGATCCGTACGAAACGCTGTTCGTA
GAAGCGGAAGGCAGCTGCTTGGGTAGGAACTGCTGTTGTTGTGCCGCTGT
CTTGGCTGCTGGAGTTTCATTGAGCGGTTGACTGTGCTGCAGCTGACTGG
GGCACGAGCCGGATCTTACATGTACTGGATGCAATTTAGCTGATGGGTTT
GTTGTAAATTCCACATTTGTGCTAATAGCTTCTTTCGGAACTTGCTGCAA
GGACGCTCCCGGAGATTTGGAGCGTGTTTTCATGTGAGTTAATCTCCTCA
TAAGTCCCACTGCTCCAGAGGAACTGCTGCTCGTAGTCGAAGCTGTGGCA
GTTTCAGGCTTGGGCTCCCGATTTCTGCTGAACAGCGCCCTCACTGGTTT
CGACCACACAGAGCAACTGGTGGTCGTGGCGGTAGCCTGCTGCTGACGAG
BO11116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4909-PA | 2517 | POSH-RA | 1665..2514 | 868..19 | 4250 | 100 | Minus |
| CG4909-PA | 2517 | POSH-RA | 1583..1661 | 950..872 | 345 | 97.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| POSH-RA | 3169 | CG4909-RA | 1915..2846 | 950..19 | 4585 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17571472..17571766 | 485..191 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 17570881..17571166 | 950..665 | 1355 | 98.3 | Minus |
| 2R | 25286936 | 2R | 17571232..17571413 | 666..485 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 17571826..17571999 | 192..19 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:38:50 has no hits.
BO11116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:28 Download gff for
BO11116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-PA | 1583..2517 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:08 Download gff for
BO11116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4909-PA | 1583..2517 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:23 Download gff for
BO11116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 1915..2846 | 19..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:56 Download gff for
BO11116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 1915..2846 | 19..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:56 Download gff for
BO11116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17570881..17571166 | 665..950 | 98 | -> | Minus |
| 2R | 17571234..17571413 | 485..664 | 100 | -> | Minus |
| 2R | 17571473..17571766 | 191..484 | 100 | -> | Minus |
| 2R | 17571828..17571999 | 19..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:23 Download gff for
BO11116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13458386..13458671 | 665..950 | 98 | -> | Minus |
| arm_2R | 13458739..13458918 | 485..664 | 100 | -> | Minus |
| arm_2R | 13458978..13459271 | 191..484 | 100 | -> | Minus |
| arm_2R | 13459333..13459504 | 19..190 | 100 | | Minus |
BO11116.5prime Sequence
867 bp (723 high quality bases) assembled on 2006-04-19
> BO11116.5prime
GAAGTTATCAGTCGACATGGACGAGCACACGTTAAACGACCTGTTGGAGT
GCTCCGTGTGTCTTGAGCGACTGGACACCACATCGAAGGTGCTGCCATGC
CAGCACACCTTCTGCCGCAAATGCTTGCAGGACATTGTGGCCAGTCAGCA
CAAGTTGCGATGCCCGGAGTGCCGCATCCTGGTCTCTTGCAAAATTGATG
AGCTGCCTCCAAACGTCTTGCTGATGCGAATCTTAGAAGGCATGAAACAA
AATGCAGCAGCTGGCAAAGGAGAAGAAAAGGGAGAGGAGACTGAAACACA
GCCGGAAAGGGCCAAACCTCAGCCGCCAGCGGAATCAGTGGCCCCGCCTG
ACAACCAACTACTCCAGCTGCAGTCACATCAGCAATCTCATCAGCCGGCT
CGTCACAAGCAACGTCGATTTCTACTCCCCCACGCCTATGCCCTCTTTGA
CTTCGCCTCCGGTGAAGCCACCGATCTAAAGTTCAAGAAAGGGGATCTGA
TACTGATCAAGCATCGCATCGACAACAACTGGTTTGTGGGTCAAGCGAAT
GGTCAGGAGGGCACATTTCCCATCAACTACGTCAAGGTATCGGTTCCGCT
GCCCATGCCGCAGTGCATTGCCATGTATGACTTTAAGATGGGGCCCAACG
ACGAGGAGGGATGCCTCGAATTTAAGAAAAGCACTGTAATACAGGTAATG
CGCCGAGTTGATCATAATTGGGCAGAAGGACGAATTGGCCAGACCATCGG
AATCTTTCCAATAGCATTCGTTGAGCTGAATGCAGCGGCCAAAAAGCTGT
TGGACAGCGGGCTACACACCCATCCATTCTGCCATCCACCGAAGCAACAG
GGGCAGCGGGCCCTTCC
BO11116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4909-PA | 2517 | POSH-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| POSH-RA | 3169 | CG4909-RA | 333..1183 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17569520..17570149 | 238..867 | 3150 | 100 | Plus |
| 2R | 25286936 | 2R | 17569064..17569178 | 17..131 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 17569243..17569355 | 128..240 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:33:12 has no hits.
BO11116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:29 Download gff for
BO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:10 Download gff for
BO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4909-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:46:16 Download gff for
BO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 333..1183 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:51 Download gff for
BO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 333..1183 | 17..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:51 Download gff for
BO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17569064..17569177 | 17..130 | 100 | -> | Plus |
| 2R | 17569246..17569354 | 131..239 | 100 | -> | Plus |
| 2R | 17569522..17570149 | 240..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:46:16 Download gff for
BO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13456569..13456682 | 17..130 | 100 | -> | Plus |
| arm_2R | 13456751..13456859 | 131..239 | 100 | -> | Plus |
| arm_2R | 13457027..13457654 | 240..867 | 100 | | Plus |
BO11116.complete Sequence
2548 bp (2548 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632002
> BO11116.complete
GAAGTTATCAGTCGACATGGACGAGCACACGTTAAACGACCTGTTGGAGT
GCTCCGTGTGTCTTGAGCGACTGGACACCACATCGAAGGTGCTGCCATGC
CAGCACACCTTCTGCCGCAAATGCTTGCAGGACATTGTGGCCAGTCAGCA
CAAGTTGCGATGCCCGGAGTGCCGCATCCTGGTCTCTTGCAAAATTGATG
AGCTGCCTCCAAACGTCTTGCTGATGCGAATCTTAGAAGGCATGAAACAA
AATGCAGCAGCTGGCAAAGGAGAAGAAAAGGGAGAGGAGACTGAAACACA
GCCGGAAAGGGCCAAACCTCAGCCGCCAGCGGAATCAGTGGCCCCGCCTG
ACAACCAACTACTCCAGCTGCAGTCACATCAGCAATCTCATCAGCCGGCT
CGTCACAAGCAACGTCGATTTCTACTCCCCCACGCCTATGCCCTCTTTGA
CTTCGCCTCCGGTGAAGCCACCGATCTAAAGTTCAAGAAAGGGGATCTGA
TACTGATCAAGCATCGCATCGACAACAACTGGTTTGTGGGTCAAGCGAAT
GGTCAGGAGGGCACATTTCCCATCAACTACGTCAAGGTATCGGTTCCGCT
GCCCATGCCGCAGTGCATTGCCATGTATGACTTTAAGATGGGGCCCAACG
ACGAGGAGGGATGCCTCGAATTTAAGAAAAGCACTGTAATACAGGTAATG
CGCCGAGTTGATCATAATTGGGCAGAAGGACGAATTGGCCAGACCATCGG
AATCTTTCCAATAGCATTCGTTGAGCTGAATGCAGCGGCCAAAAAGCTGT
TGGACAGCGGGCTACACACCCATCCATTCTGCCATCCACCGAAGCAACAG
GGGCAGCGGGCCCTTCCTCCGGTTCCAGTTATTGATCCCACGGTGGTCAC
GGAATCCAGTTCGGGATCCTCCAATTCCACGCCGGGCAGCAGCAATTCAA
GCTCCACATCCAGCTCGAATAACTGCAGTCCGAATCACCAAATCTCACTG
CCGAATACCCCCCAACATGTAGTAGCTTCCGGATCGGCGTCTGTTCGTTT
CCGTGACAAGGGAGCAAAGGAGAAACGCCACTCACTAAATGCTTTGCTGG
GAGGAGGAGCTCCATTAAGTCTGCTGCAGACCAACCGCCATTCGGCTGAA
ATTCTTAGCCTGCCCCATGAACTAAGCCGCTTGGAAGTTTCCAGCTCAAC
AGCTCTAAAACCCACGTCAGCCCCACAGACATCGCGTGTACTTAAGACCA
CTGTTCAGCAGCAGATGCAACCGAATTTACCCTGGGGATACTTAGCCCTG
TTCCCATACAAACCACGCCAAACGGATGAGCTGGAATTAAAAAAGGGTTG
TGTTTACATTGTGACCGAACGATGTGTGGACGGTTGGTTCAAGGGAAAAA
ACTGGTTGGACATCACTGGAGTGTTCCCGGGCAACTACCTGACGCCCCTG
CGCGCCCGCGACCAGCAGCAGTTAATGCATCAATGGAAATATGTTCCCCA
AAATGCAGACGCCCAGATGGCACAAGTACAGCAGCATCCAGTTGCACCAG
ATGTGCGACTCAACAACATGCTGTCCATGCAACCGCCTGATTTGCCACCT
CGTCAGCAGCAGGCTACCGCCACGACCACCAGTTGCTCTGTGTGGTCGAA
ACCAGTGGAGGCGCTGTTCAGCAGAAAATCGGAGCCCAAGCCTGAAACTG
CCACAGCTTCGACTACGAGCAGCAGTTCCTCTGGAGCAGTGGGACTTATG
AGGAGATTAACTCACATGAAAACACGCTCCAAATCTCCGGGAGCGTCCTT
GCAGCAAGTTCCGAAAGAAGCTATTAGCACAAATGTGGAATTTACAACAA
ACCCATCAGCTAAATTGCATCCAGTACATGTAAGATCCGGCTCGTGCCCC
AGTCAGCTGCAGCACAGTCAACCGCTCAATGAAACTCCAGCAGCCAAGAC
AGCGGCACAACAACAGCAGTTCCTACCCAAGCAGCTGCCTTCCGCTTCTA
CGAACAGCGTTTCGTACGGATCGCAACGCGTGAAAGGAAGCAAGGAACGT
CCTCACTTGATTTGCGCGAGACAATCATTAGATGCAGCTACATTTCGCAG
TATGTACAACAATGCCGCGTCGCCGCCGCCACCTACTACTTCCGTGGCCC
CAGCTGTCTACGCCGGCGGTCAGCAACAGGTGATTCCTGGAGGTGGAGCG
CAATCCCAGTTGCATGCCAATATGATTATTGCACCCAGCCATCGGAAGTC
GCACAGCCTAGATGCGAGTCATGTGCTGAGTCCCAGCAGCAATATGATCA
CGGAGGCGGCCATTAAGGCCAGCGCCACCACTAAGTCTCCTTACTGCACG
AGGGAAAGTCGATTCCGCTGCATTGTGCCGTATCCACCAAACAGTGACAT
TGAACTAGAGCTACATTTGGGCGACATTATCTACGTCCAGCGGAAGCAGA
AGAACGGCTGGTATAAGGGCACCCATGCCCGTACCCACAAAACCGGGCTG
TTCCCCGCCTCCTTTGTTGAACCGGATTGTGCAAGCTTTCTAGACCAT
BO11116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| POSH-RA | 2517 | CG4909-PA | 1..2514 | 17..2530 | 12570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| POSH-RA | 3169 | CG4909-RA | 333..2846 | 17..2530 | 12570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17569520..17571166 | 238..1884 | 8235 | 100 | Plus |
| 2R | 25286936 | 2R | 17571472..17571766 | 2064..2358 | 1475 | 100 | Plus |
| 2R | 25286936 | 2R | 17571232..17571413 | 1883..2064 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 17571826..17571999 | 2357..2530 | 870 | 100 | Plus |
| 2R | 25286936 | 2R | 17569064..17569178 | 17..131 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 17569243..17569355 | 128..240 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:02:46 has no hits.
BO11116.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:24 Download gff for
BO11116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 1..2517 | 17..2531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:14 Download gff for
BO11116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 327..2840 | 17..2530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:18 Download gff for
BO11116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 333..2846 | 17..2532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:24 Download gff for
BO11116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 327..2840 | 17..2530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:34 Download gff for
BO11116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 333..2846 | 17..2532 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:34 Download gff for
BO11116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17571473..17571766 | 2065..2358 | 100 | -> | Plus |
| 2R | 17571828..17571999 | 2359..2532 | 98 | | Plus |
| 2R | 17569064..17569177 | 17..130 | 100 | -> | Plus |
| 2R | 17569246..17569354 | 131..239 | 100 | -> | Plus |
| 2R | 17569522..17571166 | 240..1884 | 100 | -> | Plus |
| 2R | 17571234..17571413 | 1885..2064 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:18 Download gff for
BO11116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13459333..13459504 | 2359..2532 | 98 | | Plus |
| arm_2R | 13456569..13456682 | 17..130 | 100 | -> | Plus |
| arm_2R | 13456751..13456859 | 131..239 | 100 | -> | Plus |
| arm_2R | 13457027..13458671 | 240..1884 | 100 | -> | Plus |
| arm_2R | 13458739..13458918 | 1885..2064 | 100 | -> | Plus |
| arm_2R | 13458978..13459271 | 2065..2358 | 100 | -> | Plus |
BO11116.pep Sequence
Translation from 16 to 2548
> BO11116.pep
MDEHTLNDLLECSVCLERLDTTSKVLPCQHTFCRKCLQDIVASQHKLRCP
ECRILVSCKIDELPPNVLLMRILEGMKQNAAAGKGEEKGEETETQPERAK
PQPPAESVAPPDNQLLQLQSHQQSHQPARHKQRRFLLPHAYALFDFASGE
ATDLKFKKGDLILIKHRIDNNWFVGQANGQEGTFPINYVKVSVPLPMPQC
IAMYDFKMGPNDEEGCLEFKKSTVIQVMRRVDHNWAEGRIGQTIGIFPIA
FVELNAAAKKLLDSGLHTHPFCHPPKQQGQRALPPVPVIDPTVVTESSSG
SSNSTPGSSNSSSTSSSNNCSPNHQISLPNTPQHVVASGSASVRFRDKGA
KEKRHSLNALLGGGAPLSLLQTNRHSAEILSLPHELSRLEVSSSTALKPT
SAPQTSRVLKTTVQQQMQPNLPWGYLALFPYKPRQTDELELKKGCVYIVT
ERCVDGWFKGKNWLDITGVFPGNYLTPLRARDQQQLMHQWKYVPQNADAQ
MAQVQQHPVAPDVRLNNMLSMQPPDLPPRQQQATATTTSCSVWSKPVEAL
FSRKSEPKPETATASTTSSSSSGAVGLMRRLTHMKTRSKSPGASLQQVPK
EAISTNVEFTTNPSAKLHPVHVRSGSCPSQLQHSQPLNETPAAKTAAQQQ
QFLPKQLPSASTNSVSYGSQRVKGSKERPHLICARQSLDAATFRSMYNNA
ASPPPPTTSVAPAVYAGGQQQVIPGGGAQSQLHANMIIAPSHRKSHSLDA
SHVLSPSSNMITEAAIKASATTKSPYCTRESRFRCIVPYPPNSDIELELH
LGDIIYVQRKQKNGWYKGTHARTHKTGLFPASFVEPDCASFLDH
BO11116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| POSH-PA | 838 | CG4909-PA | 1..838 | 1..838 | 4417 | 100 | Plus |
| CAP-PN | 313 | CG18408-PN | 61..181 | 140..254 | 196 | 37.1 | Plus |
| CAP-PE | 313 | CG18408-PE | 61..181 | 140..254 | 196 | 37.1 | Plus |
| CAP-PG | 500 | CG18408-PG | 248..368 | 140..254 | 196 | 37.1 | Plus |
| CAP-PH | 500 | CG18408-PH | 248..368 | 140..254 | 196 | 37.1 | Plus |
